mRNA_Ecto-sp13_S_contig5914.16441.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5914.16441.1
Unique NamemRNA_Ecto-sp13_S_contig5914.16441.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5914.16441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5914contigEcto-sp13_S_contig5914:2228..8244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size446
Hectar predicted targeting categoryother localisation
Exons4
Cds size444
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463822.086643-CDS-Ecto-sp13_S_contig5914:2228..22951681463822.086643-CDS-Ecto-sp13_S_contig5914:2228..2295Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5914 2229..2295 -
1681463822.0975227-CDS-Ecto-sp13_S_contig5914:2704..27461681463822.0975227-CDS-Ecto-sp13_S_contig5914:2704..2746Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5914 2705..2746 -
1681463822.1099029-CDS-Ecto-sp13_S_contig5914:3162..32961681463822.1099029-CDS-Ecto-sp13_S_contig5914:3162..3296Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5914 3163..3296 -
1681463822.1312885-CDS-Ecto-sp13_S_contig5914:8043..82441681463822.1312885-CDS-Ecto-sp13_S_contig5914:8043..8244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5914 8044..8244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5914.16441.1prot_Ecto-sp13_S_contig5914.16441.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5914 2229..8244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5914.16441.1

>prot_Ecto-sp13_S_contig5914.16441.1 ID=prot_Ecto-sp13_S_contig5914.16441.1|Name=mRNA_Ecto-sp13_S_contig5914.16441.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
HWWYITHSAGEIRKEWLRSLSLRAVLSHVLHEASARWGWKVALFPSLRLE
LQAASLVGQSHNSSPTQPEQRRPHGHVGYASVAFRSTRCCCLYPCLVQDV
CSFNGSADNDFRCDYHFLRRHASAISRYNGVYYRPGVSRDSRYNGACC
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mRNA from alignment at Ecto-sp13_S_contig5914:2228..8244-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5914.16441.1 ID=mRNA_Ecto-sp13_S_contig5914.16441.1|Name=mRNA_Ecto-sp13_S_contig5914.16441.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6017bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5914:2228..8244- (Ectocarpus species13 EcNAP12_S_4_19m)
CATTGGTGGTACATCACCCATAGTGCCGGAGAAATCAGGAAGGAATGGCT
GCGTTCTCTTAGTCTGCGTGCAGTCCTCAGTCACGTGCTGCACGAAGCCA
GCGCTAGGTGGGGCTGGAAGGTAGCGCTTTTTCCAAGCCTGCGACTGGAG
TTGCAAGCGGCCAGCCTGGTCGGGCAATCACACAACAGCAGCCCCACTCA
GGTGTGACAGAGACAACCAGTTGCGTTTGCAGTAGCACTCCATGGTTTGC
CCATGCACTTCGGCTACCACTGCAGAAACTAAACACCCCAGTGCTGATGT
AGTTGTACACTGGGGTTGTCTGTCTGTGCTCCGCGCGTGACGGTGGCGGC
TGCGGGGGCAGCAGCGGGTTGTCTTTTTTTGGCTGAAGAACGAAAGGTGC
AGCCAGAACCCCGAAGTGCGGTGGTATGTGTGTCCTCGTTACGTCCCGAA
ATACCGCGCATCTCTCTCCAACCTGTACACTGCCCCCCATCATGATTCGC
CTTCTTTTCATTAGAGCATACCCCGACGTAGACCACACGCTTGGCAAAAG
CTGAGTTGTCCACCTTTATTTTACCACCACCGAGTTGCACCTGAACCCAC
CCTCAAATTCCAAACACCACCACTTAGGATGGATCTTCCAACGGTGACAA
GCCTTGTCGTAGCGTTGCGGAAGGTCGTATCCAGCGCCGTGGCTGGCCGC
CCAGAAGGCAAGTGTCTGAAAGACGTCTGAAAGAAAGACATGTTTCAGAC
GAAGCGATCGCCATCGTGACTTTTCTTTTGTACATGGAAAGGTTTCGGAA
TATGTACTCCAAGTTGTGGGTTGTCTCCCTTTTTGTTCTTGTAGATGTCT
GCGCGGGAAGATTTTTGGAACCCTCATTCCTTGATACGTTCCAAATAGTC
TAGATGGATCTTTCAACGTACCCATGGTCGTGTGCACGGGTCCACCCGCT
TGTCGGGCAACGTCACGTGTTGAGGTGCGTCCAGCGCCATGCCTGGCCGC
ACAGAAGGCCAGAGTCAGAGTCTGAAAGAGTTCTGATAGGGAGACAAGGT
TCAGACGAAGTGCTCCAACGTCATTTTTCAACTCGAACCCTCGAACCACC
CGTTATTGTTTCAGAATTTGTACATGTCAAAACAAGCACTCGGAGTATCT
CTTGAGGAGAATAAAAAATTCGAAGAAAAAACCCAGGCTGTTCGTGCGAC
AGTAGTCAGTGCTATCACTTTCGACCCAGTTAGTTTTCGTTAGGTCCATG
GGGATCTTAATTTGATCGAGTTAACGGGGGTCTGATCAAGGCGGGTCTAG
CCAAAGCGGAGCTGATCAAAAGGTAGGTCTAGCAAGAGGACAAGTCAAGG
TGGGACTAATCAAGGTGGGTCTAGCAAGGGGGAACTGATCGAAGGGGGTC
TAACCAAAGATCGACTTATAGGTTGATAGCTCTCTTAGCGCGTTCTAAGT
CTCTTGCGTTCGGATCGGCCGTAGTGAGTAAGCACGTGAGGAACAGAACC
CCAGGGGGGTCTCGCCACTGATTCAGGTACACCCGAAGGTATACCCTAGC
CCTCCTCAAACCATGGCGAGATGGAATGAATCGTAGTTTTTAGCCCACGT
TTATGCTACCGTGACATTAGTATGTATGCTATTACTTAGACGTACTTGTA
CCATCCGTTTTTTGCTCTCCATTAGGGTTGGGAAGGCTTGTCACTAGTAG
GCCCTGTCTCCCAGCCTCATCCATCCACGGAATCCCTTCGTGATTCCATG
CATGATCTCGACAAAATTTTACAGCCGAAGTGTGTAATTGAAATGAGGCC
TCCTGCTACAGCACGGGATCCACCCATATTTCCTCCCCCACCTTCGAAAA
GAAAAGGGTGGGTGGGCGGGAGAAAAGCTACGGCCTGTTTGCTAGCGATG
GGCCGAACTTCGATGTCGCTAGTTGCTGCCTTCCTTTGCCGCGTGATCCT
CCGAATTAGGCTGCGTGTCCACCCTGTGCCTTCCTCAACACGTGTCCCTT
GGGTCCAGTGTACACGCGTCTATCAAACTCTTGCTGCAGGAGCAGCGAGG
CAGCGGGATGAGCACTCCGTGAGACCTTTTCTGTTCTCTTTGTGGGACCC
CAGAAAACCGTACCAAGACGTTCGAACCAACTACACGCCTCGCGGGCGGC
ACAACAAGAGCCCAATTACATACATCCGTAGATCTGGGAGAGGTTCCGAA
TTCTACTGTGCACAATAAAATACAGCTACAGCTTCGAAGTACAGCAGTTT
ATTCGATCTTCGACAACAAATCTTCATATATTTTTCGCAGAGAGAGCAGC
GTCTTCGTTAGCGAGTCTTCGACCGTTCGGTATCATCTTCTCGCGGCTCG
GCCGTCTATACCTCCGGAGTCAGTGCTCTTCGCTGGCGACGTTGAGCACC
TCTGCGGACAACACGAGATTTCGGAGATACAGACGGCCGCTCGCGAGAGG
ATGACCCCCAACGATCGAAGACGCGCTACCGAAGACGCTCCTCCCTGTGC
CAAGTATGCGCGTGGAGAAGGGCCAATAACTGCTGTCTGTCAGCACACCT
GTTGGCACTACTCCAGCTGCCGCTCCCACGGGGACCGAATGATGGGGCGT
CGGTGACGCCGCCGGAGGTGCCGCCGCAGTCGTCGGTCGCCGGCGACGTC
GAAGCAGCTAGCTGCAGATGCCACGACGGACGGAGATGAAGCAGCAGCGC
CAGCAAAGCGGCAGGAAGAGGAGACGGAGCCGCCAAGTGGCACCGACATG
GTGGGACGCTCCGCACCGGCGATGAAGTCGTCGCGCAGCTCCTCCGGACA
TATCAGGGCGTCCGCCGCGTCTATGAGCAGCGCAAATCTCCTCTTCCGTT
GCTGCAAGAGCTCCAGTCTCGGAGATGGGGGCTCCTGCAGGCGTTTTCTT
GATGCAGTTGCTGGGTGTTGTTCTGCATCTGTCTCAACAACGTACGCAAT
TCAGCGTCAGTCAAACGAACTTGCTCTAGCGCGGTTGCGGTAGCAGCACG
CTCGTCAGCAGCAGAAGATAGCATGGGGGGTGGTGTTGGCACAGCAGCTG
ATGCAAACACTGCAGAATGTGCCGCACAAGCACGCTGGTGGCGATAGGCA
CGCGTGTTGCCGACGACGCCAAATGTTGAGAGGTTTACTGACGTAGCAGT
CCCTGGAGACCCTGACGATGACGCACTTGTCCCTGAGTCTCTTGAGCAGC
GGAGCTTACTGATGTTTCCTACTCTCTAGGATACGCTGAACAGAAGGCGG
TGGACCTGTCCTTGCAGGGGGGGGCCGCTATAGTATGGCGCAATACCTCC
TTGACAGTATTTCTATCCGGCATACAGAGTTGCATCTCCCGCGATAGCCT
GAAGATCTTTCCAAGAATTACCGTTCAGATCATTGTCCTCAAACCCCTAA
GCAACCTCCTCCGGCCTTTGTTGCCTAAGTTATCGCGAGATGGGTCCAGC
CATCCCCTTCCCCAGTCGACCATATACTCTCGAAATTGATCGCTTTCTTC
TTCCCGTTGTGGGCAAAGAAAAAAACCTCAACGAGTAGACTAGTAGGTTT
GCGAGATCATGCACTTACTAATCGCCGGCGAGACGATTTTGAGATGGGGT
GTTCTCGGAAGGGGAGTTCAGTATGTTGACTTCGAATTTCTACCCCGAAC
CTAGGCCAGCAGTAGCTTACCAGGACGTGTAGCTGTCGTCGCGAGTAGTA
GCGCCCGTACGGTCTTGGTCGGCGGCGCGCTCAATGGAGTGAATGTTGTA
GTATTTGGAGGTAGTGTTGCGTTCTTTCCGCCGCCATTTGTCACATGTCG
GTCGTTGCCGAAAGTTTTCGCTCCCCGTTGTACTGCTTTTGTAACGACCT
AGGTTTGTTCTTCGTTGTGGTGCCATCCCTCGGTGTGCATTGGTCACGTC
CCGCCTATGGTTTGCTTTGCGGTTTAACGGTCCGCCGTTCCGCCAGTGCT
CCTTTTGCATGCCATGGCCGACGTTCTCATACGGCTACACTCTCTTCCAT
TTTCTTAAGCAACTGGCCTTGACTTAAGTTAGGATTGTTTCTCGCACGCC
CCCCGATCGTAAGCACGTTTTCTCGTGACATGCGAATGTTCCTTGTTTAT
GGCATTTATGTCCTGCCCGTTTCTTTGGACTTTGCTTACTGTTTCCCCCC
GGAATCCCCCTTTTTCCATGCTTTTTCTCGATTTTGGTTTACCTTTAAAA
CTATTTTCCATTTCTTTCGCACACTATCGTAGGCTAGGTTTTCGTTGATG
TGCTCGACCGCATCGTAGCCCCCCTTCCCGTAAGATTCTGCCTGAAGTAA
TTCAGTAGTCGACCTGTTTGCTCGTGCGAGATCGTTTGTGATTTCCCTTT
ACGATTTCGTTACTTCGTGTTACGGTCTTTTCGGTTCGGATCTTTTGGTT
GTCTTTCGCACCCCACGTGCCTGTACCGCGTTTTTTCCCGCCGACTTTGC
GGTAGGCTAGTGTTCTGTTTTTTGGAGGTAGACATGTGATCGTGTTTGAC
CACGGCTACTTGGCGTCGTCAGATGCTATGACTTGGCATGGTGCTAGATT
AGGATTTCATGCCGACACATGTGTCGCTCTGTTCAGTGTGCGTATGATCC
GGTGATTACGTGTGCTTTAGATCTTGTGAGTTGGCTCGGGAAAGCGTTAA
TCACGAGAAAGAGAACAACGGAGCGCAACAACAACCTGCACCTGTGGTCG
GACAATAGAGTTCCGCACAGCCCAAGGGTGATTGATTCGAAGAAAAGGGT
CAAATGTCATGACACGTACCCGCAGTTTTTTTCCCGTTGCCGTGGTGCAT
GCACGTTGAGAATGCACCGCCAGTGCTGTGGACACGGAGTATGAGAATAG
GAGCAACTGGTTCAGACGGCGGCGAAGGCGTTCTTGCGCAGATTTCATCG
GTCCCCCTCTTCGCCCCCTCCTTTTTTGATTGCTCTTGCCTCGTTCAGCC
GGAACAGCGCCGACCACATGGGCACGTCGGGTATGCATCGGTGGCGTTCA
GATCGACCCGATGCTGCTGCCTCTACCCGTGCCTCGTCCAAGATGTTTGT
AGCTTCAATGGCAGTGCTGATAATGATTTCAGGCAAGAGACTGTGCGTCA
CGAAAGCACGCACGTAGTACAGATAGGGCCCGAACCTCTAGGTTTGTCCG
AGACTGCGGTTCTTGTTTCTCTTGTGGGCTACAATTGGCCGCCATATATT
GTAGTGATCGGTAACCGGGTTACCAAACACATGGTTCTCAAGTTATTGTT
CGGTCAAATGTTGAGCATGAGGTATTCGCCGCCAACGATCCCGTCGATAC
GTCCTCGTTGCCCCCTGCTGTACATTCTGCTCGTTAGAAATATATTCTGC
ATGGATTCATCGTGATCATTGCCTTTAGCTTGATCGCACTCACAGAAGTA
ACCCATCCCCATTCGGATCCTTTTGCTTCTGCCTCGCGGCTACGACGGCC
TCTCAACGGAATCTACCTCCCACGTCGTGTGCGCCGCGTATTCATAAGAT
GCGACTACCACTTCCTCCGCCGACACGCCAGCGCCATCAGGTGGGTTTTC
CTCCTTTGGTTTCTCAAGTAGCCGATCAAGCGTTCGGTACACACAGCACC
TCCGATTTTCGTTCTAGTTGAACGGAAGTCCAGACGGCTGATGCATGACT
GCGTGCTGAACCTAGCGATTGGTTCGCTGCTCTGGGATCGGGGGAGGGGG
GAGGCGATTCCAGAGGGCGTTTCTGTTATTGCTATGAGGGCTGAAGCAAG
CGTAGTACATCTTGCAGATCTTGAGCTTGTGGTCTATCGGTCCAGAACCC
TCGGGGCGCAGCAGGACCGGTGAATTGGATGTCCTGTTGGACGCCCAGGG
CGACGTACCTTGTAAGACGCCCAACACGTTGGCGGCCATTGCTCGTCGTG
TCCTTACCTTGCGGTTGTGCACGTACGCTCGTGCCCCTCCCGGCGACAGC
CGCTACAATGGCGTCTACTACCGCCCCGGTGTCAGCCGCGACAGCCGCTA
CAATGGCGCCTGCTGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5914:2228..8244-

>mRNA_Ecto-sp13_S_contig5914.16441.1 ID=mRNA_Ecto-sp13_S_contig5914.16441.1|Name=mRNA_Ecto-sp13_S_contig5914.16441.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5914:2228..8244- (Ectocarpus species13 EcNAP12_S_4_19m)
CATTGGTGGTACATCACCCATAGTGCCGGAGAAATCAGGAAGGAATGGCT
GCGTTCTCTTAGTCTGCGTGCAGTCCTCAGTCACGTGCTGCACGAAGCCA
GCGCTAGGTGGGGCTGGAAGGTAGCGCTTTTTCCAAGCCTGCGACTGGAG
TTGCAAGCGGCCAGCCTGGTCGGGCAATCACACAACAGCAGCCCCACTCA
GCCGGAACAGCGCCGACCACATGGGCACGTCGGGTATGCATCGGTGGCGT
TCAGATCGACCCGATGCTGCTGCCTCTACCCGTGCCTCGTCCAAGATGTT
TGTAGCTTCAATGGCAGTGCTGATAATGATTTCAGATGCGACTACCACTT
CCTCCGCCGACACGCCAGCGCCATCAGCCGCTACAATGGCGTCTACTACC
GCCCCGGTGTCAGCCGCGACAGCCGCTACAATGGCGCCTGCTGC
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