mRNA_Ecto-sp13_S_contig5911.16440.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5911.16440.1 vs. uniprot
Match: D7FXC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXC0_ECTSI) HSP 1 Score: 578 bits (1491), Expect = 1.750e-203 Identity = 371/412 (90.05%), Postives = 374/412 (90.78%), Query Frame = 3
Query: 222 MSRLTDPARLQKEIEAQKKRAEALALLNSSGGERHFKPGEIRKARDGKDGDNTLEVVTLRKAKQTYLEQSAKERLLQQQNSVREGVQRKQAGXXXXXXXXXXXXXGG-GPLPEGWKEIKDPKSGSTYYWNKSSNATSWVRPVVPPHEAPEPERGGGKGXXXXPAGSGSTGSRPGESASSXXXXXXXXXXXXXXXXXXXXXXXXXXPLPAGWKEVKDPKSGGVYFWNKAKGATTWVRPTGPTSGGSADGGSVSEVGSTPGLPEGWKAVTHAATGQTHYVHEASGKRSFTLPGSEPPDTSXXXXXXXXXXXXXXXXXXXXXXXXXXSARGSEGRNRGDSNRPKKKGRGSWEIDPLDPTGKTGGKWSDGLVQVGERMADSTASGPLWQQRPYPAPGKILRGRTPTDAETAGPRQR 1454
MSRLTDPARLQKEIEAQKKRAEALALL+SSGGERHFKPGEIRKARDGKDGDNTLEVVTLRKA+QTYLEQSAKERLLQQQNSVREGVQRKQAG XXXXXXXXXXX GPLP GWKEIKDP SGSTYYWNKSSNATSWVRPVVPPHEAPEPERGG XXXX GES X XXXXXXXXXXXXXXXXXXPLPAGWKE+KDPKSGGVYFWNKAKGATTWVRPTGP SG SADGGS GSTPGLPEGWKAVTHAATGQTHYVHEASGKRSFTLPGSEPPD SXXXXXXXXXXXXXXXXXXXXXXXXXXSARGSEGRNRGDSNRPKKKGRGSWEIDPLDPTGKTGGKWSDGLVQVGERMADSTASGPLWQQRPYPAPGKILRGRTPTDAETAGPRQR
Sbjct: 1 MSRLTDPARLQKEIEAQKKRAEALALLSSSGGERHFKPGEIRKARDGKDGDNTLEVVTLRKAQQTYLEQSAKERLLQQQNSVREGVQRKQAGGGXXXXXXXXXXXXXXGPLPGGWKEIKDPNSGSTYYWNKSSNATSWVRPVVPPHEAPEPERGGAXXXXXXXX----XXXXXGESXXXXDGGVRNGXXXXXXXXXXXXXXXXXXPLPAGWKEIKDPKSGGVYFWNKAKGATTWVRPTGPASGDSADGGSXXXXGSTPGLPEGWKAVTHAATGQTHYVHEASGKRSFTLPGSEPPDASXXXXXXXXXXXXXXXXXXXXXXXXXXSARGSEGRNRGDSNRPKKKGRGSWEIDPLDPTGKTGGKWSDGLVQVGERMADSTASGPLWQQRPYPAPGKILRGRTPTDAETAGPRQR 408
BLAST of mRNA_Ecto-sp13_S_contig5911.16440.1 vs. uniprot
Match: A0A6H5L5A1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A1_9PHAE) HSP 1 Score: 416 bits (1068), Expect = 3.040e-140 Identity = 244/314 (77.71%), Postives = 248/314 (78.98%), Query Frame = 3
Query: 222 MSRLTDPARLQKEIEAQKKRAEALALLNSSGGERHFKPGEIRKARDGKDGDNTLEVVTLRKAKQTYLEQSAKERLLQQQNSVREGVQRKQAGXXXXXXXXXXXXXGGGPLPEGWKEIKDPKSGSTYYWNKSSNATSWVRPVVPPHEAPEPERGGGK-----------------GXXXXPAGSGSTGSRPGESASSXXXXXXXXXXXXXXXXXXXXXXXXXXPLPAGWKEVKDPKSGGVYFWNKAKGATTWVRPTGPTSGGSADGGSVSEVGSTPGLPEGWKAVTHAATGQTHYVHEASGKRSFTLPGSEPPDTS 1112
MSRLTDPARLQKEIEAQKKRAEALALL+SSGGERHFKPGEIRKARDGKDGDNTLEVVTLRKA+QTYLEQSAKERLLQQQNSVREGVQRKQAG XXXXXXXXXGG LPEGWKEIKDPKSGSTYYWNKSSNATSWVRPVVPPHEAPEPERGGG XXXX + STG GES S PLPAGWKEVKDPKSGGVYFWNKAKGATTW+RPTGP S GSADG S S GSTPGLPEGWKAVTHAATGQTHYVHEASGKRSFTLPGSEPPDTS
Sbjct: 1 MSRLTDPARLQKEIEAQKKRAEALALLSSSGGERHFKPGEIRKARDGKDGDNTLEVVTLRKAQQTYLEQSAKERLLQQQNSVREGVQRKQAGGGSSXXXXXXXXXGG-LLPEGWKEIKDPKSGSTYYWNKSSNATSWVRPVVPPHEAPEPERGGGSKXXXXXXXXXXXXXXXXXXXXXXGAAPSTGEGGGESTPS--------------------------PLPAGWKEVKDPKSGGVYFWNKAKGATTWIRPTGPASRGSADGVSASGGGSTPGLPEGWKAVTHAATGQTHYVHEASGKRSFTLPGSEPPDTS 287
BLAST of mRNA_Ecto-sp13_S_contig5911.16440.1 vs. uniprot
Match: A0A7S2W7K5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W7K5_9STRA) HSP 1 Score: 137 bits (344), Expect = 2.300e-32 Identity = 125/408 (30.64%), Postives = 168/408 (41.18%), Query Frame = 3
Query: 228 RLTDPARLQKEIEAQKKRAEALALL--NSSGGERHFKPGEIRKARDGKDGDNTLEVVTLRKAKQTYLEQSA----KERLLQQQNSVREGVQRKQAGXXXXXXXXXXXXXGGGPLPEGWKEIKDPKSGSTYYWNKSSNATSWVRPVVPPHEAPEPERGGGKGXXXXPAGSGSTGSRPGESASSXXXXXXXXXXXXXXXXXXXXXXXXXXPLPAGWKEVKDPKSGGVYFWNKAKGATTWVRPTGPTSGGSADGGSVSEVGSTPGLPEGWKAVTHAATGQTHYVHEASGKRSFTLPGSEPPDTSXXXXXXXXXXXXXXXXXXXXXXXXXXSAR------GSEGRNRGDSNRPKKKGRGSWEIDPLDPTGKTGGKWSDGLVQVGERMADSTASGPLWQQRPYPAPGKILRGR 1415
++ + +L+KE++AQ KRAEALA L N G K G++ A DNTLEV R+ K Q+ K +L+QQQ ++R + A G LP WK ++D +SG TYYWN+ +N TSW RP V GS E+A+ KE AKG+ + GP G+ LP GWK +THAATGQ Y H ++ ++ +T P SE T + G + + + + K + S ++DP+DPTG+ KWS G GERMADSTASGPLWQQRPYPAPG ILRG+
Sbjct: 64 KVLEGGKLKKELDAQAKRAEALAYLQKNGCGPSEWEKTGKV--ASISGQRDNTLEVTKERRRKXXXXXQARLQGLKAKLMQQQEALRLKLGSGAASGKEPAS-------GRSALPSWWKAVQDEESGDTYYWNELTNETSWERPEV--------------------------GSAEDEAAAG--------------------------------KE-------------SAKGSGGADQAPGP--------------GANASLPSGWKQMTHAATGQAIYEHTSTKEKRWTRPTSEHDKTDIKPTAVAEDVPKDKATVGFGFSMNLKGGKRKDPSGGGKDKKGKSAKKTKFDFQKSGKVDPMDPTGEDTSKWSQGSSNPGERMADSTASGPLWQQRPYPAPGAILRGK 377
BLAST of mRNA_Ecto-sp13_S_contig5911.16440.1 vs. uniprot
Match: W7THS9_9STRA (Ubiquitin-protein ligase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7THS9_9STRA) HSP 1 Score: 113 bits (283), Expect = 9.130e-24 Identity = 89/231 (38.53%), Postives = 106/231 (45.89%), Query Frame = 3
Query: 834 PLPAGWKEVKDPK-SGGVYFWNKAKGATTWVRPTG--PTSGGSADGG--------------SVSEVGSTPG---------------------LPEGWKAVTHAATGQTHYVHEASGKRSFTLPGSEPPDTSXXXXXXXXXXXXXXXXXXXXXXXXXXSARGSEGRNRGDSNRPKKKGRGSWEIDPLDPTGKTG-GKWSDGLVQVGERMADSTASGPLWQQRPYPAPGKILR 1409
PLPAGW+ V DP+ SG Y+W+ TTW RP+ PT+ S D G S + G PG LPEGWK V HAATGQ YVH ASG + ++ P TS + G++G G K RG EIDPLDPTG G G W+ GL G+RMADSTA G LWQQRP PAPG +L+
Sbjct: 181 PLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRPTIAGDVTSDIQQTRQTHLEAARQAEL--------AQTGAKGGKDGGG-----KKRGREEIDPLDPTGGRGSGGWTQGLGG-GDRMADSTAGGSLWQQRPLPAPGAVLK 397
BLAST of mRNA_Ecto-sp13_S_contig5911.16440.1 vs. uniprot
Match: D7FXB9_ECTSI (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB9_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 1.270e-19 Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = -3
Query: 1 MAQAAAGNVLRASLFAVPVALAFHDVIGSPVQVEGRSMQPAINPHLGPE 147
MAQAAAGNVLRASLFAVPVALAFHDVIGSPVQVEGRSMQPAINPHLGPE
Sbjct: 1 MAQAAAGNVLRASLFAVPVALAFHDVIGSPVQVEGRSMQPAINPHLGPE 49
BLAST of mRNA_Ecto-sp13_S_contig5911.16440.1 vs. uniprot
Match: A0A8J2X3M8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3M8_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.480e-16 Identity = 68/154 (44.16%), Postives = 87/154 (56.49%), Query Frame = 3
Query: 996 LPEGWKAVTHAATGQTHYVHEASGKRSFTLPGSEPPDTSXXXXXXXXXXXXXXXXXXXXXXXXXXSARGSEGRNRGDSNRPKKKGRGSWEIDPLDPTGKTGGKWSDGLVQVGERMADSTASGPLWQQRPYPAPGKILRGRTP--TDAETAGPRQ 1451
LP GW + H ++ Q +YV +A+G+R + EPP + XXXXXXXXXXX K R +IDPLDP G +GG++SDGL GERMADSTASGPLWQQRPYPAPG +L+ R P + + GP++
Sbjct: 201 LPPGWSSRVHPSSNQVYYVKDATGERRW-----EPPTHANDAGDGATRRPEGPKXXXXXXXXXXXXXX---------------KKRDKSQIDPLDPLGLSGGRYSDGLHHKGERMADSTASGPLWQQRPYPAPGSVLKMRGPGVREGSSIGPQR 334
BLAST of mRNA_Ecto-sp13_S_contig5911.16440.1 vs. uniprot
Match: A0A662WZ89_9STRA (WW domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WZ89_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.230e-12 Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 3
Query: 1266 IDPLDPTGKTGGKWSDGLVQVGERMADSTASGPLWQQRPYPAPGKILR 1409
IDP+DPTG+ GGKWSDGLV ER ADST +GPL+QQRPYPAPG++LR
Sbjct: 288 IDPMDPTGR-GGKWSDGLVDPSERAADSTVTGPLYQQRPYPAPGQVLR 334
BLAST of mRNA_Ecto-sp13_S_contig5911.16440.1 vs. uniprot
Match: A0A8J9RBB4_9CHLO (Probable polyglutamine-binding protein 1 at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RBB4_9CHLO) HSP 1 Score: 76.6 bits (187), Expect = 4.060e-11 Identity = 111/291 (38.14%), Postives = 131/291 (45.02%), Query Frame = 3
Query: 546 PLPEGWKEIKDPKSGSTYYWNKSSNATSWVRPVVPPHEAPEPERGGGKGXXXXPAGSGSTGSRPGESASSXXXXXXXXXXXXXXXXXXXXXXXXXXPLPAGWKEVKDPKSGGVYFWNKAKGATTWVRPTGPTSGGSADGGSVSEVGSTPGLPEGWKAVTHAATGQTHYVHEASGKRSFTLPGSEPPDTSXXXXXXXXXXXXXXXXXXXXXXXXXXSARGSEGRNRGDSNRPKKKGRGSWEIDPLDPTGKTG---GKWSDGLVQVGERMADSTASGPLWQQRPYPAPGKILR 1409
PLPEGW E DP Y++N S+ +WVRP XXXXXXXXXXXXXXXXXX PLP GW E P +G Y++N A G T W RPT + G V T G EG+ V Y H+ L G EP XXXXXXXXXXXXXX ++ R S R + EIDP+DP+ + G WS G+ R AD+TASGPL+QQRPYPAPG +LR
Sbjct: 443 PLPEGWSEAVDPTYNHPYWYNVSTGERTWVRP-------------------------------------KPVAKXXXXXXXXXXXXXXXXXXMTGTPLPLGWSEAVAPDTGLPYYFNAATGQTQWERPT---AAAGLSGPFVPSATFT-GRVEGY--VFKMGAKGLGYYHDVP------LAG-EPAAAPQXXXXXXXXXXXXXXAAEPRERLNRREVIAAQQERRHASRRQRD------EIDPMDPSAYSDAPLGGWSSGMEGAQPRAADTTASGPLFQQRPYPAPGSVLR 677
BLAST of mRNA_Ecto-sp13_S_contig5911.16440.1 vs. uniprot
Match: A0A0P4WMW1_SCYOL (WW domain-containing protein n=3 Tax=Portunidae TaxID=6757 RepID=A0A0P4WMW1_SCYOL) HSP 1 Score: 69.7 bits (169), Expect = 2.050e-9 Identity = 65/217 (29.95%), Postives = 90/217 (41.47%), Query Frame = 3
Query: 834 PLPAGWKEVKDPKSGGVYFWNKAKGATTWVRPTGPTSGGSADGGSVSEVGSTPGLPEGWKAVTHAATGQTHYVHEASGKRSFTLPGSEPPDTSXXXXXXXXXXXXXXXXXXXXXXXXXXSARGSEGRNRGDSNRPKKKGRG------SWEIDPLDPT--GKTG-GKWSDGLVQVGERM--ADSTASGPLWQQRPYPAPGKILRGRTPTDAETAGPRQ 1451
PLP W+EV DP G Y+WN +W+ P P S G++ + + E K + + TGQ + + + E PD GS R++G + RG + E+DP+DP G G G WS GL Q E AD TASGPL+Q RPYP+PG +L+ A T GP++
Sbjct: 109 PLPTHWQEVLDPGIGRYYYWNTETDLVSWLPPGHPRCQVSRSAGTLRKEM----VAEMHKNRSTSGTGQ----QQDNDIEMTRVENEEGPDGEEHGSDKSEGSGDEGSQRDKREVERWERTGGSRDRDKGKERSRGRDRRGGRRPPPTEELDPMDPASYGDCGRGTWSSGLPQKNEARTGADVTASGPLFQMRPYPSPGAVLKANAA--ASTIGPKK 315
BLAST of mRNA_Ecto-sp13_S_contig5911.16440.1 vs. uniprot
Match: UPI00077AF80D (polyglutamine-binding protein 1-like n=2 Tax=Acropora TaxID=6127 RepID=UPI00077AF80D) HSP 1 Score: 68.6 bits (166), Expect = 2.450e-9 Identity = 56/200 (28.00%), Postives = 80/200 (40.00%), Query Frame = 3
Query: 834 PLPAGWKEVKDPKSGGVYFWNKAKGATTWVRPTGPTSGGSADGGSVSEVGSTPGLPEGWKAVTHAATGQTHYVHEASGKRSFTLPGSE---PPDTSXXXXXXXXXXXXXXXXXXXXXXXXXXSARGSEGRNRGDSNRPKKKGRGSWEIDPLDPTGKTG---GKWSDGLVQVGERMA--DSTASGPLWQQRPYPAPGKILR 1409
PLP GW V DP SG YFWN +W+ P P + +T +A+ ++ K S P E PP +A G+ + + +K + S EIDP+DP + G W+ GL++ GE D+TA+GPL+Q RPYP+PG +LR
Sbjct: 71 PLPIGWYLVPDPSSGSSYFWNTVTNQVSWLHPLDPAA-----------------------EITLSASAASNQ------KESDVQPNREILSPPGVDTENDKEQVLSIGKHPSLVKGSQKRQEAA----GKRKHEKEIRAEKRKKSEEIDPMDPASYSDAPKGTWTTGLIKKGEAKTGVDTTANGPLFQMRPYPSPGAVLR 237 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5911.16440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5911.16440.1 >prot_Ecto-sp13_S_contig5911.16440.1 ID=prot_Ecto-sp13_S_contig5911.16440.1|Name=mRNA_Ecto-sp13_S_contig5911.16440.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=459bp MPTPPARQTAMHGEHFPLRPGPWYLRGQRAGEQNSTGKCTTLWTPVDMSRback to top mRNA from alignment at Ecto-sp13_S_contig5911:1140..7218+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5911.16440.1 ID=mRNA_Ecto-sp13_S_contig5911.16440.1|Name=mRNA_Ecto-sp13_S_contig5911.16440.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6079bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5911:1140..7218+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5911:1140..7218+ >mRNA_Ecto-sp13_S_contig5911.16440.1 ID=mRNA_Ecto-sp13_S_contig5911.16440.1|Name=mRNA_Ecto-sp13_S_contig5911.16440.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1377bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5911:1140..7218+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |