mRNA_Ecto-sp13_S_contig59094.16436.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59094.16436.1
Unique NamemRNA_Ecto-sp13_S_contig59094.16436.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig59094.16436.1 vs. uniprot
Match: D8LQC0_ECTSI (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQC0_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 2.040e-52
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 IGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKH 267
            +GYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKH
Sbjct:  451 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKH 539
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BLAST of mRNA_Ecto-sp13_S_contig59094.16436.1 vs. uniprot
Match: A0A7S0SGT6_9CHLO (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SGT6_9CHLO)

HSP 1 Score: 151 bits (382), Expect = 2.480e-44
Identity = 71/88 (80.68%), Postives = 80/88 (90.91%), Query Frame = 1 
Query:    1 IGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNK 264
            +GY+PVEVDPEDM+ +A E+P  MAAYSVSDAV+TYYLY TYVH F+FSL TIIPM PD+VLRKGSGTLCEALLMVEA+RGNIVCPNK
Sbjct:   43 LGYNPVEVDPEDMLPFAQEQPHTMAAYSVSDAVSTYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEALLMVEAFRGNIVCPNK 130
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BLAST of mRNA_Ecto-sp13_S_contig59094.16436.1 vs. uniprot
Match: A0A7S2FZE0_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZE0_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.950e-43
Identity = 69/90 (76.67%), Postives = 79/90 (87.78%), Query Frame = 1 
Query:    1 IGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHV 270
            +GYDPVEVDPEDMVR+A E+P  MA+YSVSDAVATYYLY  YVH F+F+L TIIPMGP+DVL KGSGTLCEALLM+EA R N++CPNK V
Sbjct:  133 LGYDPVEVDPEDMVRFAKEQPEHMASYSVSDAVATYYLYSLYVHDFIFALTTIIPMGPEDVLNKGSGTLCEALLMIEACRCNVICPNKQV 222
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BLAST of mRNA_Ecto-sp13_S_contig59094.16436.1 vs. uniprot
Match: A0A7S2UHD4_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHD4_9STRA)

HSP 1 Score: 153 bits (387), Expect = 3.280e-43
Identity = 71/90 (78.89%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:    1 IGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHV 270
            +GYDPVEVDPEDM+RYA ERP  MA+YSVSDAVATYYLY+ YVHMF+FSL TIIPMGP+DVLRKGSGTLCEALLMV+A   +I+CPNK +
Sbjct:  233 LGYDPVEVDPEDMLRYAKERPVHMASYSVSDAVATYYLYEKYVHMFIFSLATIIPMGPEDVLRKGSGTLCEALLMVQACTKDIICPNKQL 322
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BLAST of mRNA_Ecto-sp13_S_contig59094.16436.1 vs. uniprot
Match: B8BW81_THAPS (DNA polymerase epsilon catalytic subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BW81_THAPS)

HSP 1 Score: 158 bits (400), Expect = 4.120e-43
Identity = 74/90 (82.22%), Postives = 82/90 (91.11%), Query Frame = 1 
Query:    1 IGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHV 270
            +GYDPVEVDPEDMVRYA +RP+ MA+YSVSDAVATYYLY  YVHMF+FSLCTIIPMGP+DVLRKGSGTLCEALLMVEA   +I+CPNK V
Sbjct:  340 LGYDPVEVDPEDMVRYARDRPSHMASYSVSDAVATYYLYDKYVHMFIFSLCTIIPMGPEDVLRKGSGTLCEALLMVEACTKSIICPNKQV 429
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BLAST of mRNA_Ecto-sp13_S_contig59094.16436.1 vs. uniprot
Match: A0A812Q0Y1_9DINO (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Q0Y1_9DINO)

HSP 1 Score: 157 bits (396), Expect = 1.410e-42
Identity = 74/90 (82.22%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:    1 IGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHV 270
            +GYDPVE+DPEDM+R A+E+P  MA+YSVSDAVATYYLY  YVH FVFSLCTIIPM PDDVLRKGSGTLCE LLMVEA+RGNIVCPNK V
Sbjct:  425 LGYDPVEIDPEDMLRLAAEQPLHMASYSVSDAVATYYLYMKYVHNFVFSLCTIIPMQPDDVLRKGSGTLCEMLLMVEAHRGNIVCPNKQV 514
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BLAST of mRNA_Ecto-sp13_S_contig59094.16436.1 vs. uniprot
Match: A0A7S4W861_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W861_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.410e-42
Identity = 68/90 (75.56%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:    1 IGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHV 270
            +GYDPVEVDPEDMVR+A E+P  MA YSVSDAVAT+YLY+ YVHMF+FSL TIIPM P+DVLRKGSGTLCE LLMV+A +  I+CPNK V
Sbjct:   40 LGYDPVEVDPEDMVRFAMEKPAYMAQYSVSDAVATFYLYEKYVHMFIFSLATIIPMNPEDVLRKGSGTLCETLLMVQATQKAIICPNKQV 129
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BLAST of mRNA_Ecto-sp13_S_contig59094.16436.1 vs. uniprot
Match: A0A1R3JS58_COCAP (DNA polymerase epsilon catalytic subunit n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3JS58_COCAP)

HSP 1 Score: 149 bits (376), Expect = 1.510e-42
Identity = 67/89 (75.28%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:    1 IGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKH 267
            +GYDP+EV+PEDMVR+A E+P  MA+YSVSDAVATYYLY TYVH F+FSL TIIPM PD+VLRKGSGTLCE LLMV+AY+ N++CP+KH
Sbjct:  204 LGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMWPDEVLRKGSGTLCEMLLMVQAYKANVICPSKH 292
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BLAST of mRNA_Ecto-sp13_S_contig59094.16436.1 vs. uniprot
Match: W7TVX1_9STRA (DNA-directed DNA polymerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVX1_9STRA)

HSP 1 Score: 155 bits (393), Expect = 3.630e-42
Identity = 75/90 (83.33%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:    1 IGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHV 270
            +GYDPVEVDPEDMVR+A ER TEMA+YSVSDAVATYYLY TYVH F+FSL TIIPM  +DVLRKGSGTLCE LLMVEA+RGNIVCPNK V
Sbjct:  444 LGYDPVEVDPEDMVRFAHERATEMASYSVSDAVATYYLYTTYVHNFIFSLSTIIPMKAEDVLRKGSGTLCETLLMVEAFRGNIVCPNKQV 533
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BLAST of mRNA_Ecto-sp13_S_contig59094.16436.1 vs. uniprot
Match: UPI000B8D0A56 (LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8D0A56)

HSP 1 Score: 154 bits (390), Expect = 9.200e-42
Identity = 71/89 (79.78%), Postives = 81/89 (91.01%), Query Frame = 1 
Query:    1 IGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKH 267
            +GYDP+EV+PEDMVR+A E+P  MA+YSVSDAVATYYLY TYVH F+FSL TIIPM PD+VLRKGSGTLCE LLMV+AYRGNI+CPNKH
Sbjct:  405 LGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMCPDEVLRKGSGTLCEMLLMVQAYRGNIICPNKH 493
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59094.16436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQC0_ECTSI2.040e-5298.88DNA polymerase epsilon catalytic subunit n=1 Tax=E... [more]
A0A7S0SGT6_9CHLO2.480e-4480.68DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A7S2FZE0_9STRA1.950e-4376.67DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A7S2UHD4_9STRA3.280e-4378.89DNA polymerase epsilon catalytic subunit (Fragment... [more]
B8BW81_THAPS4.120e-4382.22DNA polymerase epsilon catalytic subunit n=1 Tax=T... [more]
A0A812Q0Y1_9DINO1.410e-4282.22DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A7S4W861_9STRA1.410e-4275.56DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A1R3JS58_COCAP1.510e-4275.28DNA polymerase epsilon catalytic subunit n=1 Tax=C... [more]
W7TVX1_9STRA3.630e-4283.33DNA-directed DNA polymerase n=2 Tax=Monodopsidacea... [more]
UPI000B8D0A569.200e-4279.78LOW QUALITY PROTEIN: DNA polymerase epsilon cataly... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59094contigEcto-sp13_S_contig59094:12..696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score187.6
Seed ortholog evalue2.6e-45
Seed eggNOG ortholog2880.D8LQC0
Preferred namePOLE1
Model size270
KEGG rclassRC02795
KEGG koko:K02324
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000278,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006281,GO:0006284,GO:0006287,GO:0006289,GO:0006297,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0008296,GO:0008297,GO:0008310,GO:0008408,GO:0008622,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0018130,GO:0019438,GO:0022616,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
Exons2
EggNOG free text desc.DNA replication proofreading
EggNOG OGsCOG0417@1,KOG1798@2759
EC2.7.7.7
Cds size270
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463821.515305-CDS-Ecto-sp13_S_contig59094:11..891681463821.515305-CDS-Ecto-sp13_S_contig59094:11..89Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59094 12..89 -
1681463821.5280085-CDS-Ecto-sp13_S_contig59094:504..6961681463821.5280085-CDS-Ecto-sp13_S_contig59094:504..696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59094 505..696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59094.16436.1prot_Ecto-sp13_S_contig59094.16436.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59094 12..696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59094.16436.1

>prot_Ecto-sp13_S_contig59094.16436.1 ID=prot_Ecto-sp13_S_contig59094.16436.1|Name=mRNA_Ecto-sp13_S_contig59094.16436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
IGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSL
CTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHV
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mRNA from alignment at Ecto-sp13_S_contig59094:12..696-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59094.16436.1 ID=mRNA_Ecto-sp13_S_contig59094.16436.1|Name=mRNA_Ecto-sp13_S_contig59094.16436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=685bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59094:12..696- (Ectocarpus species13 EcNAP12_S_4_19m)
ATAGGGTACGACCCCGTGGAGGTAGACCCGGAGGACATGGTGAGGTACGC
GTCGGAGAGGCCTACGGAGATGGCGGCCTACTCCGTCTCCGACGCCGTGG
CCACCTACTACCTCTACCAGACCTACGTGCACATGTTCGTCTTCAGCCTG
TGCACCATCATACCGATGGGGCCGGATGATGTGCTGCGGAAGGTACGAAA
CGTCGCGTCGTATTGTTTTGAGAGAGACGTGTGCTGAAAGGGAGGTGGGT
GCGGGAGAGAAATTGAGGTTTGCCTGAAACCCGTTGGTGGTTGGGGCGGC
TGTGGCGATGGCGGTTGTCCTTGTGAGGATTTCGCATTCTTATCGTAACA
TGAGGATTACCGGTCATCTGAATTTGCTGGGTTGATGGTGTCGTTGCGGG
CGGTGGTGGTGATGCTGTTGTTGTGGGGCGCCTTGTACAGTCCTGTCATT
CCCCAGTCTGTCCAAACATGAAGGATTCCCGACAAGCTGAACTGTAACCC
GTTCACTATTTGCTGGCTTCCCCGCTCGAACGGCGTACTCATCCCCTCCC
CCCCTGCCGGCCTCCCTTGGGCCTCCTACTCACCTCCACCGTCATGTACG
TGTGCAGGGATCCGGAACGCTTTGCGAGGCGCTTTTGATGGTGGAGGCCT
ACCGGGGAAACATCGTCTGTCCGAACAAGCACGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59094:12..696-

>mRNA_Ecto-sp13_S_contig59094.16436.1 ID=mRNA_Ecto-sp13_S_contig59094.16436.1|Name=mRNA_Ecto-sp13_S_contig59094.16436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59094:12..696- (Ectocarpus species13 EcNAP12_S_4_19m)
ATAGGGTACGACCCCGTGGAGGTAGACCCGGAGGACATGGTGAGGTACGC
GTCGGAGAGGCCTACGGAGATGGCGGCCTACTCCGTCTCCGACGCCGTGG
CCACCTACTACCTCTACCAGACCTACGTGCACATGTTCGTCTTCAGCCTG
TGCACCATCATACCGATGGGGCCGGATGATGTGCTGCGGAAGGGATCCGG
AACGCTTTGCGAGGCGCTTTTGATGGTGGAGGCCTACCGGGGAAACATCG
TCTGTCCGAACAAGCACGTG
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