mRNA_Ecto-sp13_S_contig5908.16434.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5908.16434.1
Unique NamemRNA_Ecto-sp13_S_contig5908.16434.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5908.16434.1 vs. uniprot
Match: D7FT75_ECTSI (Vacuolar protein 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT75_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 3.790e-60
Identity = 300/326 (92.02%), Postives = 300/326 (92.02%), Query Frame = 1
Query:   76 LSLGRRDNGDLESQRYAVFALTNVAATRSNHSRLIGAGVCELMAALLEADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLSGCIGQDPARFLKAVDVGNLVSFLCSADVTYRLFGAVTLGNIASDVNLQAPIVRGGALTPLITIANAADLETQRCIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFCLGARCEDDVEVRREAARLLFALSLNELNKLDVA 1053
            LSLGRRDNGDLESQ                     GAGVCELMAALLEADD     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLSGCIGQDPARFLKAVDVGNLVSFLCSADVTYRLFGAVTLGNIASDVNLQAPIVRGGALTPLITIANAADLETQRCIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFCLGARCEDDVEVRREAARLLFALSLNELNKLDVA
Sbjct: 1464 LSLGRRDNGDLESQXXXXXXXXXXXXXXXXXXXXXGAGVCELMAALLEADDVEIRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLSGCIGQDPARFLKAVDVGNLVSFLCSADVTYRLFGAVTLGNIASDVNLQAPIVRGGALTPLITIANAADLETQRCIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFCLGARCEDDVEVRREAARLLFALSLNELNKLDVA 1789          
BLAST of mRNA_Ecto-sp13_S_contig5908.16434.1 vs. uniprot
Match: A0A7S4K0F1_9STRA (Vacuolar protein 8 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K0F1_9STRA)

HSP 1 Score: 134 bits (337), Expect = 7.280e-31
Identity = 249/353 (70.54%), Postives = 291/353 (82.44%), Query Frame = 1
Query:    1 MGVGNLATNLGNQEKIINEGALQPLLSLGRR---DNGDLESQRYAVFALTNVAATRSNHSRLIGAGVCELMAALLEADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLSGCIGQDPARFLKAVDVGNLVSFLCSADVTYRLFGAVTLGNIASDVNLQAPIVRGGALTPLITIANAADLETQRCIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFCLGARCEDDVEVRREAARLLFALSLNELNKLDV 1050
            M + NLATN  NQ ++I EG +QPLL + ++   +  D ++QRYA+F+LTN+AA++  HS L+ +G+ +L  + + +  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  LSL G IG +    L +VDV  L+SFLCSAD TYRLFGAV +GNIASD++LQ P++ GGAL PL+ +AN +DLE+QR IA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  EA  LG RC  + + + EAA  L+ALSL++ NK+D+
Sbjct:    1 MAIANLATNQENQNRVIEEGGMQPLLMIAKQGGLEAVDSDAQRYAMFSLTNIAASKDTHSELVDSGLLQLAVSFINSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCNLSLGGYIGANAQSLLHSVDVHTLISFLCSADSTYRLFGAVAMGNIASDLSLQRPLMNGGALGPLVGVANKSDLESQRGIAYAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALEAISLGLRCSRNDQCQFEAASTLYALSLDDRNKVDI 353          
BLAST of mRNA_Ecto-sp13_S_contig5908.16434.1 vs. uniprot
Match: A0A7S1TU23_9STRA (Vacuolar protein 8 (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU23_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.090e-30
Identity = 61/80 (76.25%), Postives = 66/80 (82.50%), Query Frame = 1
Query:  514 LSLSGCIGQDPARFLKAVDVGNLVSFLCSADVTYRLFGAVTLGNIASDVNLQAPIVRGGALTPLITIANAADLETQRCIA 753
            LSL GCIG +P  FL+A+DV NLVSFLCSAD TYRLFGAV LGNIASD  LQ P+V GGAL PLI +ANAADLETQR IA
Sbjct:   89 LSLCGCIGDNPLSFLRALDVSNLVSFLCSADTTYRLFGAVALGNIASDSELQDPVVEGGALNPLIAVANAADLETQRAIA 168          
BLAST of mRNA_Ecto-sp13_S_contig5908.16434.1 vs. uniprot
Match: A0A6G0XH40_9STRA (Vacuolar protein 8 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XH40_9STRA)

HSP 1 Score: 125 bits (314), Expect = 7.990e-28
Identity = 79/231 (34.20%), Postives = 104/231 (45.02%), Query Frame = 1
Query:   64 LQPLLSLGRRDNGDLESQRYAVFALTNVAATRSNHSRLIGAGVCELMAALLEADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LSLSGCIGQDPARFLKAVDVGNLVSFLCSADVTYRLFGAVTLGNIASDVNLQAPIVRGGALTPLITIANAADLETQRCIA 753
            + PL  L +  NGD++SQRYA+FALTN+AA ++ H++LI AG+  L A+LL+ +D                                                                                                LSLSGCIG DP  FL + DV +LVSFLCSAD TYRLFGA+TLGN+AS       +VR GALTPL+ ++++ D+ET RCIA
Sbjct: 1456 IHPLTILAKFGNGDVDSQRYAMFALTNLAAVQTTHTQLIDAGIITLFASLLQEEDASIRNAAAFGIANFAAFPENHRLIVESANCLEALIDLVSSADGKSVLRAVSALRGLSVDATIREDIVRMGGLPPLLKLTQSKDMDVQQEVLACLCNLSLSGCIGADPGLFLSSCDVHSLVSFLCSADATYRLFGAITLGNVASKAEHHESLVRAGALTPLVELSHSVDIETHRCIA 1686          
BLAST of mRNA_Ecto-sp13_S_contig5908.16434.1 vs. uniprot
Match: A0A1W0A0C2_9STRA (Vacuolar protein 8 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0C2_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.040e-27
Identity = 80/229 (34.93%), Postives = 101/229 (44.10%), Query Frame = 1
Query:   70 PLLSLGRRDNGDLESQRYAVFALTNVAATRSNHSRLIGAGVCELMAALLEADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LSLSGCIGQDPARFLKAVDVGNLVSFLCSADVTYRLFGAVTLGNIASDVNLQAPIVRGGALTPLITIANAADLETQRCIA 753
            PL  L +  NGD++SQRYAVF LTN+A+ ++ H++LI AG+  L  +LL+ DD                                                                                                LSLSGCIG DP  FL A DV +L++FLCSAD TYRLFGA+TLGNIAS   LQ  I+  GAL PL+ +++A DLET RCIA
Sbjct: 1459 PLSILAKFGNGDIDSQRYAVFTLTNLASIKTTHAQLIDAGIIALFTSLLQEDDASIRNAAAFGIANFAAFPENHSLIVDAPNCLQALIQLVSSADGKSVLRAVSALRGLSVDSAVRDKIIKMGGLPPLLALTHSKDMDVQQEVLATLCNLSLSGCIGNDPELFLDACDVQSLITFLCSADATYRLFGAITLGNIASKAELQEEILLSGALNPLVELSSAVDLETHRCIA 1687          
BLAST of mRNA_Ecto-sp13_S_contig5908.16434.1 vs. uniprot
Match: A0A7S4SWL4_9STRA (Vacuolar protein 8 (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SWL4_9STRA)

HSP 1 Score: 114 bits (285), Expect = 5.220e-27
Identity = 55/77 (71.43%), Postives = 65/77 (84.42%), Query Frame = 1
Query:  514 LSLSGCIGQDPARFLKAVDVGNLVSFLCSADVTYRLFGAVTLGNIASDVNLQAPIVRGGALTPLITIANAADLETQR 744
            LSL GCIG++    L+ V++ NLVSFLCSAD TYRLFGAVT+GNIASD+ LQ P+V+ GALTPLIT AN+ADLETQR
Sbjct:   96 LSLGGCIGENRKEVLEKVNMSNLVSFLCSADSTYRLFGAVTIGNIASDLGLQPPVVKSGALTPLITTANSADLETQR 172          
BLAST of mRNA_Ecto-sp13_S_contig5908.16434.1 vs. uniprot
Match: A0A835Z6R1_9STRA (Vacuolar protein 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6R1_9STRA)

HSP 1 Score: 122 bits (307), Expect = 6.620e-27
Identity = 221/333 (66.37%), Postives = 245/333 (73.57%), Query Frame = 1
Query:   82 LGRRDNGDLESQRYAVFALTNVAATRSNHSRLIGAGVCELMAALLEA-----DDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLSGCIGQDPARFLKAVDVGNLVSFLCSADVTYRLFGAVTLGNIASDVNLQAPIVRGGALTPLITIANAA-DLETQRCIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EAFCLGARCEDD--VEVRREAARLLFALSLNELNKLDVA 1053
            L RR NGD E+QR+A+ ALTN AA+R+ H+ L  AGV  L AALL+      DD            XXXXXXXXXXXXXXXXXXXXX                             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SL+GC+G +PA FL+AVDV +LVSFLCSAD+T+RLFGAV LGN+A+    +AP+  GGAL PL+ +A+AA DLETQRCI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +AF   A C     V VRREAAR + A +LNELNKLDVA
Sbjct: 1528 LARRANGDAETQRHALRALTNAAASRAAHAALAAAGVIALAAALLDGSSGGGDDVELRDAAAFCVAXXXXXXXXXXXXXXXXXXXXXVALLGAEDARAQLRAAAALRGLSVDEALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLTGCVGANPAAFLRAVDVEHLVSFLCSADLTFRLFGAVALGNVAAHAAHRAPVAAGGALAPLVAVADAAADLETQRCIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQAFEAAAACGGGAAVRVRREAARGIAAAALNELNKLDVA 1860          
BLAST of mRNA_Ecto-sp13_S_contig5908.16434.1 vs. uniprot
Match: T0SIR8_SAPDV (Vacuolar protein 8 n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0SIR8_SAPDV)

HSP 1 Score: 122 bits (305), Expect = 1.200e-26
Identity = 81/231 (35.06%), Postives = 100/231 (43.29%), Query Frame = 1
Query:   64 LQPLLSLGRRDNGDLESQRYAVFALTNVAATRSNHSRLIGAGVCELMAALL-EADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLSGCIGQDPARFLKAVDVGNLVSFLCSADVTYRLFGAVTLGNIASDVNLQAPIVRGGALTPLITIANAADLETQRCIA 753
            + PL  L +  NGD++SQRYAV+ALTN+A+ ++ H +LI AG+  L  +LL EAD                                                                                                LSLSGCIG  P  FL A DV  L++FLCSAD TYRLFGA+TLGNIAS    Q  IV  GALTPL+ +++A DLET RCIA
Sbjct: 1457 IHPLSVLAKLGNGDIDSQRYAVYALTNLASVQTTHGQLIDAGIISLFTSLLNEADASIRNAAAFGIANFAAFPENHALLVDAPNCLSSLLQLVASGDGKSVLRAVSALRGLSVDAAVRDRIVQMGGLPPLLALTRSKDMDVQQEVLATLCNLSLSGCIGASPDLFLDACDVHALIAFLCSADATYRLFGAITLGNIASKAQHQETIVDAGALTPLVELSSAVDLETHRCIA 1687          
BLAST of mRNA_Ecto-sp13_S_contig5908.16434.1 vs. uniprot
Match: A0A485LIX7_9STRA (Vacuolar protein 8 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIX7_9STRA)

HSP 1 Score: 120 bits (300), Expect = 5.410e-26
Identity = 80/228 (35.09%), Postives = 99/228 (43.42%), Query Frame = 1
Query:   73 LLSLGRRDNGDLESQRYAVFALTNVAATRSNHSRLIGAGVCELMAALLEADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LSLSGCIGQDPARFLKAVDVGNLVSFLCSADVTYRLFGAVTLGNIASDVNLQAPIVRGGALTPLITIANAADLETQRCIA 753
            L +L +  NGD++SQRYA FALTN+AA +S H++LI AG+  L  +LL+ +D                                                                                                LSLSGCIG DP  FL A DV +LVSFLCSAD TYRLFGA+TLGN+AS       IV  GALTPL+ ++ + DLET RCIA
Sbjct: 1459 LTTLAKFGNGDVDSQRYATFALTNLAAVQSTHTQLIDAGLITLFTSLLQEEDASIRNAAAFGIANFAAFPENHRLLVESDHCLESLIDLVSSADGKSVLRAVSALRGLCVDALIREDVVRMGGLPPLLKLTQSKDMDVQQEVLACLCNLSLSGCIGADPGLFLAACDVQSLVSFLCSADATYRLFGAITLGNVASKAEHHDAIVAHGALTPLVELSRSVDLETHRCIA 1686          
BLAST of mRNA_Ecto-sp13_S_contig5908.16434.1 vs. uniprot
Match: W4GV31_9STRA (Vacuolar protein 8 n=15 Tax=Aphanomyces TaxID=100860 RepID=W4GV31_9STRA)

HSP 1 Score: 120 bits (300), Expect = 5.410e-26
Identity = 79/228 (34.65%), Postives = 98/228 (42.98%), Query Frame = 1
Query:   73 LLSLGRRDNGDLESQRYAVFALTNVAATRSNHSRLIGAGVCELMAALLEADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LSLSGCIGQDPARFLKAVDVGNLVSFLCSADVTYRLFGAVTLGNIASDVNLQAPIVRGGALTPLITIANAADLETQRCIA 753
            L  L +  NGD++SQRYA FALTN+A+ +S H++LIG G+  L   LL+ +D                                                                                                LSLSGCIG DP+ FL A DV +LVSFLCSAD TYRLFGA+TLGN+A+       IV  GALTPLI ++ + DLET RCIA
Sbjct: 1459 LTVLAKFGNGDVDSQRYATFALTNLASVQSTHTQLIGGGIITLFTGLLQEEDASIRNAAAFGIANFAAFSENHRLIVESGNCLEALIDLVSSADGKSVLRAVSALRGLCVDAVIREDVVRMGGLPPLLRLTHSKDMDVQQEVLACLCNLSLSGCIGADPSLFLSACDVQSLVSFLCSADATYRLFGAITLGNVAAKAEHHETIVGSGALTPLIELSRSVDLETHRCIA 1686          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5908.16434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT75_ECTSI3.790e-6092.02Vacuolar protein 8 n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S4K0F1_9STRA7.280e-3170.54Vacuolar protein 8 n=1 Tax=Odontella aurita TaxID=... [more]
A0A7S1TU23_9STRA2.090e-3076.25Vacuolar protein 8 (Fragment) n=1 Tax=Phaeomonas p... [more]
A0A6G0XH40_9STRA7.990e-2834.20Vacuolar protein 8 n=1 Tax=Aphanomyces euteiches T... [more]
A0A1W0A0C2_9STRA2.040e-2734.93Vacuolar protein 8 n=1 Tax=Thraustotheca clavata T... [more]
A0A7S4SWL4_9STRA5.220e-2771.43Vacuolar protein 8 (Fragment) n=1 Tax=Ditylum brig... [more]
A0A835Z6R1_9STRA6.620e-2766.37Vacuolar protein 8 n=1 Tax=Tribonema minus TaxID=3... [more]
T0SIR8_SAPDV1.200e-2635.06Vacuolar protein 8 n=1 Tax=Saprolegnia diclina (st... [more]
A0A485LIX7_9STRA5.410e-2635.09Vacuolar protein 8 n=1 Tax=Aphanomyces stellatus T... [more]
W4GV31_9STRA5.410e-2634.65Vacuolar protein 8 n=15 Tax=Aphanomyces TaxID=1008... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5908contigEcto-sp13_S_contig5908:2251..4070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score221.9
Seed ortholog evalue4.8e-55
Seed eggNOG ortholog2880.D7FT75
Model size1053
KEGG koko:K08332
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.nucleus-vacuole junction assembly
EggNOG OGsKOG0167@1,KOG0167@2759,KOG4224@1,KOG4224@2759
Cds size1053
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463821.4400241-CDS-Ecto-sp13_S_contig5908:2250..26071681463821.4400241-CDS-Ecto-sp13_S_contig5908:2250..2607Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5908 2251..2607 +
1681463821.4567037-CDS-Ecto-sp13_S_contig5908:2951..30861681463821.4567037-CDS-Ecto-sp13_S_contig5908:2951..3086Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5908 2952..3086 +
1681463821.4707062-CDS-Ecto-sp13_S_contig5908:3256..37291681463821.4707062-CDS-Ecto-sp13_S_contig5908:3256..3729Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5908 3257..3729 +
1681463821.4809093-CDS-Ecto-sp13_S_contig5908:3982..40701681463821.4809093-CDS-Ecto-sp13_S_contig5908:3982..4070Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5908 3983..4070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5908.16434.1prot_Ecto-sp13_S_contig5908.16434.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5908 2251..4070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5908.16434.1

>prot_Ecto-sp13_S_contig5908.16434.1 ID=prot_Ecto-sp13_S_contig5908.16434.1|Name=mRNA_Ecto-sp13_S_contig5908.16434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=351bp
MGVGNLATNLGNQEKIINEGALQPLLSLGRRDNGDLESQRYAVFALTNVA
ATRSNHSRLIGAGVCELMAALLEADDVEIRNSAAFCVGNFASNPDNHATL
MDEGVLGPLINLVASSDPQAQLRAASALRGLSVDEELRTQIVARGGLVPL
LRLSSSDDVEIQMEVLAALCNLSLSGCIGQDPARFLKAVDVGNLVSFLCS
ADVTYRLFGAVTLGNIASDVNLQAPIVRGGALTPLITIANAADLETQRCI
AYSLCNLSANPARRGAIILEGGLPSLISLACSDHPVDQRAALATLRAISA
DPDHRRAVVEAGALEAFCLGARCEDDVEVRREAARLLFALSLNELNKLDV
A
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mRNA from alignment at Ecto-sp13_S_contig5908:2251..4070+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5908.16434.1 ID=mRNA_Ecto-sp13_S_contig5908.16434.1|Name=mRNA_Ecto-sp13_S_contig5908.16434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1820bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5908:2251..4070+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGTTGGAAATCTCGCCACGAACCTCGGCAACCAAGAGAAGATCAT CAACGAGGGAGCCCTGCAGCCCCTCCTCTCCCTAGGCCGCCGGGACAACG GCGACCTCGAATCCCAGCGGTACGCCGTCTTCGCCCTGACGAACGTCGCA GCCACCCGGAGCAACCACTCGCGCTTGATCGGCGCCGGCGTGTGCGAGCT CATGGCCGCGCTGCTGGAGGCGGACGACGTCGAGATCCGGAACTCGGCTG CGTTCTGCGTTGGTAATTTCGCGTCTAACCCCGACAACCACGCAACGCTG ATGGACGAGGGGGTGTTGGGGCCGCTGATTAACCTCGTCGCGTCGTCGGA CCCGCAGGTGTGTGTATGTGCCGTGGAGTATTTCGTCAGTTTTGGCCCGC CTGTTTCTCTGGTTGGTTTGGCTGCCTTGGTTGCCTATTCTGTGAGATGA GGGAAAAGAACGAATCAGCGCGGCACGACCCGACAGAAAGTGGTAACGTG TGCGCCGTTGTCTTTCAGCATATTACACAGCCGACCGTTCCAACCTCGAA TGCTGAGCGTCACACGATACGTGGTTTCTTCGTGGCTTCCATGAACACAT ATGCGGCGACGGCAATATCTCCAACGCCAGATGCAACGCCGATCTCCTTG CTCAACCCTTCTCCTTGACGCCTTGACGTTGCCCATTCGGCACACCTACA GGCGCAGCTTCGAGCGGCCTCTGCCCTCCGAGGGCTTTCCGTCGACGAAG AGCTGCGCACCCAGATTGTCGCCCGGGGGGGTCTAGTGCCACTGCTACGG CTCAGCAGCAGCGACGACGTCGAAATTCAGATGGAGGTATGCGTGTAACT GATTCCGTTCATTCCGCCAGGGTCACTCACCCTGAACATCGTTGCAGATC ACCCGTGAAATCGCTTCGCCCCCCCCCCGTCTACTCTTCACTACCAGCTC CTGCGCCTCCACACCGCCCAAACGGGAAAAACAATAACACGTGTTTGTGT GCGTAGGTTCTAGCCGCCTTGTGCAACTTGTCCTTGTCCGGGTGCATCGG CCAAGACCCGGCGCGCTTCCTCAAGGCGGTGGACGTCGGGAACCTGGTCT CCTTCCTGTGCTCGGCGGACGTCACCTACCGCCTTTTCGGGGCGGTCACT CTGGGCAACATCGCCTCCGACGTCAACCTCCAGGCCCCCATCGTCCGGGG CGGGGCTTTGACCCCTCTCATCACCATCGCCAACGCCGCCGACTTGGAGA CCCAGCGCTGCATCGCGTACTCCCTGTGCAACCTCTCGGCCAACCCTGCA CGGCGGGGGGCGATCATCTTGGAGGGGGGGCTGCCGTCGCTGATCTCGCT CGCGTGTAGCGATCACCCCGTCGACCAGCGGGCGGCGCTGGCGACCCTGA GGGCGATTTCCGCCGACCCGGATCACCGGAGAGCGGTCGTGGAGGCCGGA GCCCTGGAGGCGTTCTGCTTGGGGGCGAGGTGAGAAACACCTGTCCATTC ATGTCCCCAGCCACAGCGCTTGCACTTCGGTATGACAACATATTAGGCAA AAAATGTTCCTCCCCCTGTCTCACCCTACTGTTTGGCCTTCCAACAACAC CCGCTCCCGACCGCAACACCGAGCGGTTCGGCTGCCAGCGATTGCCTTTT CTGCCTCTTCAACATAAGCTCGTCTGCCTCGCCGATGTTCGTGAAACCAT GAAAACGACGACTCGTGCGGCCGCATCACCAGGTGCGAGGACGATGTCGA GGTCCGAAGAGAGGCCGCCCGTCTCCTCTTCGCCCTGTCGCTCAACGAGC TCAACAAGTTGGACGTCGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5908:2251..4070+

>mRNA_Ecto-sp13_S_contig5908.16434.1 ID=mRNA_Ecto-sp13_S_contig5908.16434.1|Name=mRNA_Ecto-sp13_S_contig5908.16434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1053bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5908:2251..4070+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGTTGGAAATCTCGCCACGAACCTCGGCAACCAAGAGAAGATCAT
CAACGAGGGAGCCCTGCAGCCCCTCCTCTCCCTAGGCCGCCGGGACAACG
GCGACCTCGAATCCCAGCGGTACGCCGTCTTCGCCCTGACGAACGTCGCA
GCCACCCGGAGCAACCACTCGCGCTTGATCGGCGCCGGCGTGTGCGAGCT
CATGGCCGCGCTGCTGGAGGCGGACGACGTCGAGATCCGGAACTCGGCTG
CGTTCTGCGTTGGTAATTTCGCGTCTAACCCCGACAACCACGCAACGCTG
ATGGACGAGGGGGTGTTGGGGCCGCTGATTAACCTCGTCGCGTCGTCGGA
CCCGCAGGCGCAGCTTCGAGCGGCCTCTGCCCTCCGAGGGCTTTCCGTCG
ACGAAGAGCTGCGCACCCAGATTGTCGCCCGGGGGGGTCTAGTGCCACTG
CTACGGCTCAGCAGCAGCGACGACGTCGAAATTCAGATGGAGGTTCTAGC
CGCCTTGTGCAACTTGTCCTTGTCCGGGTGCATCGGCCAAGACCCGGCGC
GCTTCCTCAAGGCGGTGGACGTCGGGAACCTGGTCTCCTTCCTGTGCTCG
GCGGACGTCACCTACCGCCTTTTCGGGGCGGTCACTCTGGGCAACATCGC
CTCCGACGTCAACCTCCAGGCCCCCATCGTCCGGGGCGGGGCTTTGACCC
CTCTCATCACCATCGCCAACGCCGCCGACTTGGAGACCCAGCGCTGCATC
GCGTACTCCCTGTGCAACCTCTCGGCCAACCCTGCACGGCGGGGGGCGAT
CATCTTGGAGGGGGGGCTGCCGTCGCTGATCTCGCTCGCGTGTAGCGATC
ACCCCGTCGACCAGCGGGCGGCGCTGGCGACCCTGAGGGCGATTTCCGCC
GACCCGGATCACCGGAGAGCGGTCGTGGAGGCCGGAGCCCTGGAGGCGTT
CTGCTTGGGGGCGAGGTGCGAGGACGATGTCGAGGTCCGAAGAGAGGCCG
CCCGTCTCCTCTTCGCCCTGTCGCTCAACGAGCTCAACAAGTTGGACGTC
GCC
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