mRNA_Ecto-sp13_S_contig5907.16432.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5907.16432.1
Unique NamemRNA_Ecto-sp13_S_contig5907.16432.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5907.16432.1 vs. uniprot
Match: D7G366_ECTSI (F420_oxidored domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G366_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 8.310e-13
Identity = 39/61 (63.93%), Postives = 43/61 (70.49%), Query Frame = 3 
Query:  648 GRRLHSSRNRP*LT---VPPNPLHPNLQMKEDGDKTDGERWTPQSNWPPPDLVLIEDAYEE 821
            G R H   N P      V P+PLHPNLQMKEDGDK   ERWTP+S WPPPDLVL+ED YE+
Sbjct:  328 GTRSHQRANLPRTLSSPVQPHPLHPNLQMKEDGDKPGCERWTPRSYWPPPDLVLMEDVYEQ 388
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BLAST of mRNA_Ecto-sp13_S_contig5907.16432.1 vs. uniprot
Match: D7G368_ECTSI (F420_oxidored domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G368_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 7.450e-5
Identity = 28/32 (87.50%), Postives = 28/32 (87.50%), Query Frame = 2 
Query:  722 DEGRRRQNRRRTMDAAIELATSRSGPHRGCLR 817
            DEGRRRQ R RTMDAAI LATSRSGPH GCLR
Sbjct:  267 DEGRRRQARLRTMDAAIVLATSRSGPHGGCLR 298
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5907.16432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G366_ECTSI8.310e-1363.93F420_oxidored domain-containing protein n=1 Tax=Ec... [more]
D7G368_ECTSI7.450e-587.50F420_oxidored domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5907contigEcto-sp13_S_contig5907:897..2744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size853
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionPyrroline-5-carboxylate reductase, catalytic, N-terminal
Ec32 orthologEc-03_004680.2
Cds size216
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463821.1156497-UTR-Ecto-sp13_S_contig5907:896..12481681463821.1156497-UTR-Ecto-sp13_S_contig5907:896..1248Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5907 897..1248 -
1681463821.1498008-UTR-Ecto-sp13_S_contig5907:2459..27441681463821.1498008-UTR-Ecto-sp13_S_contig5907:2459..2744Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5907 2460..2744 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463821.1259422-CDS-Ecto-sp13_S_contig5907:1248..13651681463821.1259422-CDS-Ecto-sp13_S_contig5907:1248..1365Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5907 1249..1365 -
1681463821.1360004-CDS-Ecto-sp13_S_contig5907:1923..20221681463821.1360004-CDS-Ecto-sp13_S_contig5907:1923..2022Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5907 1924..2022 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5907.16432.1prot_Ecto-sp13_S_contig5907.16432.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5907 1249..2022 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5907.16432.1

>prot_Ecto-sp13_S_contig5907.16432.1 ID=prot_Ecto-sp13_S_contig5907.16432.1|Name=mRNA_Ecto-sp13_S_contig5907.16432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
MKEDGDKTDGERWTPQSNWPPPDLVLIEDAYEERYPFIRSAYTRVGQTQT
VAPLIYFLPMCAISRRTWREA*
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mRNA from alignment at Ecto-sp13_S_contig5907:897..2744-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5907.16432.1 ID=mRNA_Ecto-sp13_S_contig5907.16432.1|Name=mRNA_Ecto-sp13_S_contig5907.16432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1848bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5907:897..2744- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCCGCTGTCTCAGCGCGATTCCCTCACGACCACGGGCAACCACGACCT
GGACACGAGGGACAGTCCACATTCTCTGCAAGAACCAGAAAATGACCGCA
AGTCTCCCAGTGTTATTGCGTCGAGAGGGGCGCAGCCCTGCCAAGGCGAA
GAGCCCAACGCTCCGCCGGACAACCGCCTCGAGGCTGAACAAGAAGACGT
AGGTACATCGCCTCATCTAGGGGACGAAACGGTACAACCCATATGCGACA
CCCCCGCTGGGCAAAAGGGTGTCAGTCACGAAAAGGTACGAGGCTGTCCA
ATCAGTCGGGACGATGCGGATCGAATGAGGGCTCACTAGGCAGCCGACGC
TAGTTTTGTACAAATTTATGGTATAACGAGTTGTGCGTAATCTGGAGGCA
TGTTGTAGCAAACGTATCGTTTTCCGGCTCAGCAACGTCCTCGGGTATGT
GTGTGACAGCCGCCGCTGATGTTGTTAGCGTACGGGCGGGAATGATGCTG
TATCATGCGCATTTTCAGACCCACTCTTCACCTGGTACTAAGTGTCCGTA
CCAGCTCTTAACCAGGAGAGAAAAGTGAAGACAGCTCGTGGACCTCATAC
GACAAAAGTAGCATACAGCACACACACCGTACATCGTAGGCCACACAGGG
AGGAGACTGCATTCGTCCCGCAATCGACCGTAACTGACAGTTCCACCAAA
CCCGCTGCACCCAAACCTGCAGATGAAGGAAGACGGAGACAAAACAGACG
GCGAACGATGGACGCCGCAATCGAATTGGCCACCTCCAGATCTGGTCCTC
ATCGAGGATGCCTACGAGGAGGTACAAAACTCGTCAAGAGACGACCGCAC
GATCATGTGTACTCCAGGTTCGATTCCCAGTCGAATATTCATGGTAGTTT
CGCCTAGAAAGCCGGCAATGCATTACGAAGGCAACACATGCCTCGTTTTT
ACCAGATTGTGTCAAAGAGTAGAGAGCGCATCAAACATTGACATTCTACA
GCATAGCTGATATATGGCGCGTACGATGGATACCCCGGCAAATTAATCAG
GCGCTTGAATGATGGCTCCTACCACCACACCAACTTTCATGTAGGCATTG
TCCTATCCGCTAGTGTCTAAGTCGAGATTGACTGAGCATGGAAGACGCGC
CCAATCGTGGAATTCCGGAACAGGCGTGATAAACGCAGGACAAAGAGCGA
TGTGCAGATATGACCACTTTTTTCAGCATTTTAGGACAAACCTTGCACGA
TGGCCCCGCCCTGAAAAGCCTCACCGACACTTTCCCGACTTTGCTGACAC
AATTCCGAACGCTTCCAGATGCTACGTGCCCCATATGGCGATGCCGTTCG
GGAAAGCGGCTACCAGAGTGGATTGTGAGCGCTACCCCTTCATTCGTTCC
GCTTATACCCGCGTCGGCCAAACCCAAACGGTGGCACCGTTGATCTATTT
CCTACCGATGTGTGCAATATCAAGACGTACATGGAGAGAGGCGTAGAAGG
GAGATGTGCTCCAGGATTGGGGTTCAAGACATATCACGACGGATTGGAGA
GTTTTCCAGAAGAAAACATCCGTTGGGTCGACCGGGAAAATCATGTTCAT
CCCCCTTCTGTTACTTGACTTTCGCGATGTTCACGATCAGCATGTCCGTG
ATATGGAGGCTGATTAGGTGGGAAGAGATTGCATGTGAAAGTCTGTGCAG
GGAGTTAGATAGGAGGGATATGGCATGTCGGCACCAGCGTGAACTGCATT
TTCATCGTTGACCTTGGGGCATGTGCTGAGACACAGAAACCGGTCCCGCG
CCGCAGACTTGACTTTCGACCCGATCAACAGTATTGACATGTTCTTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5907:897..2744-

>mRNA_Ecto-sp13_S_contig5907.16432.1 ID=mRNA_Ecto-sp13_S_contig5907.16432.1|Name=mRNA_Ecto-sp13_S_contig5907.16432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5907:897..2744- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGAAGACGGAGACAAAACAGACGGCGAACGATGGACGCCGCAATC
GAATTGGCCACCTCCAGATCTGGTCCTCATCGAGGATGCCTACGAGGAGC
GCTACCCCTTCATTCGTTCCGCTTATACCCGCGTCGGCCAAACCCAAACG
GTGGCACCGTTGATCTATTTCCTACCGATGTGTGCAATATCAAGACGTAC
ATGGAGAGAGGCGTAG
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