mRNA_Ecto-sp13_S_contig5905.16430.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5905.16430.1
Unique NamemRNA_Ecto-sp13_S_contig5905.16430.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5905.16430.1 vs. uniprot
Match: A0A6H5KDB8_9PHAE (Myosin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KDB8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.790e-18
Identity = 60/89 (67.42%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:    1 MRQKIAYGELRDLRIKAKDVGNLKEDNDRLKAEILELRQAAAA-SKATAPASDKQVSSXXXX---------SGEEVDSLRREVVSLRAR 237
            MRQKIAYGELR LRIKAKDVGNLK +N+RLKAEIL LRQAAAA S    PASD+QV +             +G+EVDSLRREVV+LRAR
Sbjct:  912 MRQKIAYGELRGLRIKAKDVGNLKGENERLKAEILALRQAAAAASXXXXPASDEQVRAKDLVIICQVSSSSNGKEVDSLRREVVTLRAR 1000
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BLAST of mRNA_Ecto-sp13_S_contig5905.16430.1 vs. uniprot
Match: D8LTS1_ECTSI (Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS1_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.120e-14
Identity = 51/78 (65.38%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:    4 RQKIAYGELRDLRIKAKDVGNLKEDNDRLKAEILELRQAAAASKATAPASDKQVSSXXXXSGEEVDSLRREVVSLRAR 237
            RQKIAYGELRDLRIKAKDVGNLK DN+RLKAEIL LR+AA  S A A A D++++S      +E DSLR EV  L+A+
Sbjct:  946 RQKIAYGELRDLRIKAKDVGNLKGDNERLKAEILVLREAA--SNAAAAAGDERLTSAM----KEADSLREEVEKLKAK 1017
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BLAST of mRNA_Ecto-sp13_S_contig5905.16430.1 vs. uniprot
Match: A0A6H5KVF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF9_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.510e-13
Identity = 48/70 (68.57%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    1 MRQKIAYGELRDLRIKAKDVGNLKEDNDRLKAEILELRQAAAASKATAPASDKQVSSXXXXSGEEVDSLR 210
            MRQKIAYGELRDLR+KAKDVGNLK DN+RLKAEIL LRQAA  S A A A D++++S      +E DSLR
Sbjct:  146 MRQKIAYGELRDLRMKAKDVGNLKVDNERLKAEILVLRQAA--SNAAAAAGDERLTSAM----KEADSLR 209
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5905.16430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KDB8_9PHAE1.790e-1867.42Myosin motor domain-containing protein n=2 Tax=Ect... [more]
D8LTS1_ECTSI1.120e-1465.38Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5KVF9_9PHAE2.510e-1368.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5905contigEcto-sp13_S_contig5905:7396..7960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score81.3
Seed ortholog evalue2.3e-13
Seed eggNOG ortholog2880.D8LTS1
Model size237
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
GOsGO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
Exons2
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
Cds size237
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463821.0197303-CDS-Ecto-sp13_S_contig5905:7395..74701681463821.0197303-CDS-Ecto-sp13_S_contig5905:7395..7470Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5905 7396..7470 -
1681463821.0316236-CDS-Ecto-sp13_S_contig5905:7798..79601681463821.0316236-CDS-Ecto-sp13_S_contig5905:7798..7960Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5905 7799..7960 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5905.16430.1prot_Ecto-sp13_S_contig5905.16430.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5905 7396..7960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5905.16430.1

>prot_Ecto-sp13_S_contig5905.16430.1 ID=prot_Ecto-sp13_S_contig5905.16430.1|Name=mRNA_Ecto-sp13_S_contig5905.16430.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MRQKIAYGELRDLRIKAKDVGNLKEDNDRLKAEILELRQAAAASKATAPA
SDKQVSSSSSSSGEEVDSLRREVVSLRAR
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mRNA from alignment at Ecto-sp13_S_contig5905:7396..7960-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5905.16430.1 ID=mRNA_Ecto-sp13_S_contig5905.16430.1|Name=mRNA_Ecto-sp13_S_contig5905.16430.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=565bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5905:7396..7960- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCAGAAGATAGCCTACGGGGAGCTGAGGGACCTCCGTATCAAGGC
CAAGGATGTGGGCAACCTCAAGGAGGATAACGACCGCCTAAAGGCAGAGA
TCCTGGAGCTCAGGCAGGCCGCCGCCGCCTCTAAGGCTACTGCCCCTGCA
AGTGATAAACAAGTGCGCGCGAAAGAGGTTGTCTTCGTAATTATTTGTCA
AGTGCTTGTCTTTGTCAAGCCACCTCACCCCGAAGACACTTACTCGGAAG
TTCTGGCGCTTTTGCTATTGTGTGGCATTTTTTTTCTCTTAGCGTGGACA
GGAAGGCTACGAGCAATCGGCCTTCGATGCCGTAAACGGCATCTGACCAA
CAAGCAGGGGGAAGTCTCGAGAAATCTGGGGGGAGAAGTTGAGTGATTCT
GTGGGAACTCGCGCAGTTTGTTAACAACCTGGTTTTGGGCATCAAACCAC
TGACTAATTTTCCCGCCTCCCTTTCGATTTTCCTTCTCAGGTGTCGTCGT
CGTCGTCGTCTTCTGGGGAGGAGGTGGACAGCTTGAGGAGAGAGGTGGTG
TCGCTAAGAGCCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5905:7396..7960-

>mRNA_Ecto-sp13_S_contig5905.16430.1 ID=mRNA_Ecto-sp13_S_contig5905.16430.1|Name=mRNA_Ecto-sp13_S_contig5905.16430.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5905:7396..7960- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCAGAAGATAGCCTACGGGGAGCTGAGGGACCTCCGTATCAAGGC
CAAGGATGTGGGCAACCTCAAGGAGGATAACGACCGCCTAAAGGCAGAGA
TCCTGGAGCTCAGGCAGGCCGCCGCCGCCTCTAAGGCTACTGCCCCTGCA
AGTGATAAACAAGTGTCGTCGTCGTCGTCGTCTTCTGGGGAGGAGGTGGA
CAGCTTGAGGAGAGAGGTGGTGTCGCTAAGAGCCAGG
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