mRNA_Ecto-sp13_S_contig5903.16429.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5903.16429.1
Unique NamemRNA_Ecto-sp13_S_contig5903.16429.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5903.16429.1 vs. uniprot
Match: D7FYT2_ECTSI (DUF3752 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYT2_ECTSI)

HSP 1 Score: 432 bits (1111), Expect = 4.970e-149
Identity = 236/241 (97.93%), Postives = 239/241 (99.17%), Query Frame = 1 
Query:    1 DGPAPRRAPIGPAMPSQAMLAQAQQAAKDFVQEDSSSDDDEDHFGPSVAGKEKRVASERADPNRAKRQKRQELKRAAEWENATGVITGGQAALDKAEAEVGREEWMLVPPKSLGVLGAIKTLQPTNRKFQTRSARGARADLHAPKAPKSKAEMEAEAAAEELMAKHREARGASLVERHASDVSKAKKAAGGRDGGKKTFSWSREDDFEQRKKFTPQMYEELVQKSQELDSKFSRSISRNFL 723
            DGPAPRRAPIGPAMPSQAMLAQAQQAAKDFVQEDSSSDDDED FGPS+AGKEKRVASERADPNRAKRQKRQELKRAAEWENATGVITGGQAALDKAEAEVGREEWMLVPPKSLGVLGAIKTLQPTNRKFQTRSARGARADLHAPKAPKSKAEMEAEAAAEELMAKHREARGASLVERHASDVSKAKKAAGG DGGKK+FSWSRE+DFEQRKKFTPQMYEELVQKSQELDSKFSRSISRNFL
Sbjct:  221 DGPAPRRAPIGPAMPSQAMLAQAQQAAKDFVQEDSSSDDDEDQFGPSIAGKEKRVASERADPNRAKRQKRQELKRAAEWENATGVITGGQAALDKAEAEVGREEWMLVPPKSLGVLGAIKTLQPTNRKFQTRSARGARADLHAPKAPKSKAEMEAEAAAEELMAKHREARGASLVERHASDVSKAKKAAGGGDGGKKSFSWSREEDFEQRKKFTPQMYEELVQKSQELDSKFSRSISRNFL 461
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BLAST of mRNA_Ecto-sp13_S_contig5903.16429.1 vs. uniprot
Match: A0A835YLN1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLN1_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 5.250e-17
Identity = 76/171 (44.44%), Postives = 92/171 (53.80%), Query Frame = 1 
Query:   28 IGPAMPSQAMLAQAQQAAKDFVQEDSSSDDDEDHFGPSVAGKEKRVASERADPNRAKRQKRQELKRAAEWENATGVITGGQAALDKAEAEVGREEWMLVPPKSLGVLGAIKTL-QPTNRKFQTRSARGARADLHAPKA-PKSKAEMEAEAAAEELMAKHREARGASLVERH 534
            IGP  P  A+L QA Q +    +    SD  +D  GPS +   +R A  R  P                W   T     G AA     A   REEWM+VPPK+LG+LGA+KTL QPT+RKFQT S  GA      PKA PK+KA++E E AAEELMA+HR  RG SL + H
Sbjct:  382 IGPMRPPAALLEQAAQMSSALAKRPLDSDSSDDDVGPSTSHV-RRPARHR--PXXXXXXXXXXXXXXXXW---TKTPAAGTAA-----ASTVREEWMMVPPKNLGILGALKTLAQPTSRKFQTGSKAGA-----VPKAVPKTKAQLEEERAAEELMAQHRAMRGPSLADMH 536
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BLAST of mRNA_Ecto-sp13_S_contig5903.16429.1 vs. uniprot
Match: A0A7S3YEG5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEG5_HETAK)

HSP 1 Score: 65.9 bits (159), Expect = 2.740e-9
Identity = 56/150 (37.33%), Postives = 82/150 (54.67%), Query Frame = 1 
Query:  304 REEWMLVPPKSLGVLGAIKTLQPTNRKFQTRSARGARADLHA-PKAPKSKAEMEAEAAAEELMAKHREARGASLVERHASD------VSKAKKAAGGRDGGKKTFSWSREDDF---EQRKKFTPQMYEELVQKSQELDSKFSRSISRNFL 723
            REEWM+ P ++  ++     L PTNR FQT+S RG  ++  A P  P SK +    A  EE++AKH+E RG SLVERH  +              G +   +K+ + S + DF      KK       EL++++  LDS+FSRS+S++FL
Sbjct:   88 REEWMMTPGEAKSLIPG--GLMPTNRTFQTKSLRGKNSEAAAGPALPVSKEQALENARVEEVLAKHKELRGDSLVERHQKEQXXXXXXXXXXXXKGPKVDPRKSKNISFDRDFLIEGASKKLDKSRAAELMKRAAGLDSRFSRSVSKSFL 235
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5903.16429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYT2_ECTSI4.970e-14997.93DUF3752 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YLN1_9STRA5.250e-1744.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3YEG5_HETAK2.740e-937.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5903contigEcto-sp13_S_contig5903:2..2998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score438.3
Seed ortholog evalue2.3e-120
Seed eggNOG ortholog2880.D7FYT2
Model size726
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.Protein of unknown function (DUF3752)
EggNOG OGs2E6XR@1,2SDK1@2759
Ec32 ortholog descriptionProtein of unknown function DUF3752
Ec32 orthologEc-19_002410.1
Cds size726
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5903.16429.1prot_Ecto-sp13_S_contig5903.16429.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5903 2..2998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463820.925924-CDS-Ecto-sp13_S_contig5903:1..1001681463820.925924-CDS-Ecto-sp13_S_contig5903:1..100Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5903 2..100 +
1681463820.937895-CDS-Ecto-sp13_S_contig5903:285..3621681463820.937895-CDS-Ecto-sp13_S_contig5903:285..362Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5903 286..362 +
1681463820.948227-CDS-Ecto-sp13_S_contig5903:517..6291681463820.948227-CDS-Ecto-sp13_S_contig5903:517..629Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5903 518..629 +
1681463820.958934-CDS-Ecto-sp13_S_contig5903:1011..11151681463820.958934-CDS-Ecto-sp13_S_contig5903:1011..1115Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5903 1012..1115 +
1681463820.969995-CDS-Ecto-sp13_S_contig5903:1427..15391681463820.969995-CDS-Ecto-sp13_S_contig5903:1427..1539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5903 1428..1539 +
1681463820.9806345-CDS-Ecto-sp13_S_contig5903:2371..25151681463820.9806345-CDS-Ecto-sp13_S_contig5903:2371..2515Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5903 2372..2515 +
1681463820.989906-CDS-Ecto-sp13_S_contig5903:2920..29981681463820.989906-CDS-Ecto-sp13_S_contig5903:2920..2998Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5903 2921..2998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5903.16429.1

>prot_Ecto-sp13_S_contig5903.16429.1 ID=prot_Ecto-sp13_S_contig5903.16429.1|Name=mRNA_Ecto-sp13_S_contig5903.16429.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
DGPAPRRAPIGPAMPSQAMLAQAQQAAKDFVQEDSSSDDDEDHFGPSVAG
KEKRVASERADPNRAKRQKRQELKRAAEWENATGVITGGQAALDKAEAEV
GREEWMLVPPKSLGVLGAIKTLQPTNRKFQTRSARGARADLHAPKAPKSK
AEMEAEAAAEELMAKHREARGASLVERHASDVSKAKKAAGGRDGGKKTFS
WSREDDFEQRKKFTPQMYEELVQKSQELDSKFSRSISRNFL*
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mRNA from alignment at Ecto-sp13_S_contig5903:2..2998+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5903.16429.1 ID=mRNA_Ecto-sp13_S_contig5903.16429.1|Name=mRNA_Ecto-sp13_S_contig5903.16429.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2997bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5903:2..2998+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGGCCCGGCACCTCGTAGGGCCCCTATTGGTCCAGCCATGCCTTCCCA
AGCCATGCTCGCCCAGGCACAACAGGCAGCGAAGGACTTTGTCCAGGAGG
TGCGACGAACGGTGGCCATGACATTGGTCTCTCTCTTTCTATGACTTGTT
TAATCTCTTTCGTCGTCAATCTCCACATGAGATGTGGTATCAAGTTTCGC
CAATGCTGGTGTCAGGAGTGTGCTTCGGGTAGGCGCAAGTGTTTCCTTCA
AATTTTGATCATCCGTTGGTTTGCCTCGCAGCAGGACTCTTCATCTGACG
ACGATGAAGATCATTTCGGGCCGTCCGTCGCCGGCAAAGAGAAACGCGTC
GCATCCGAACGGTGCGTTTTTCGTCCCCGTAAGCATTACCTTGACTTTGA
CGCTACCCATCACACGTACTTCACGGAGGTCTTTGGTTGTGTTGCACTGT
TCAGTGCCCTTTTGAGCATCGTGTCGTGTCATCCATCACCGTTGGCGTCG
TGCTTGTGTGATTCAGAGCGGACCCGAACCGAGCCAAACGGCAGAAACGG
CAGGAGTTGAAGCGTGCGGCCGAGTGGGAGAATGCCACTGGTGTTATCAC
AGGAGGGCAGGCTGCGCTCGACAAGGCGGTGAGAATGATCGACGGACTAG
CGTGTGTGGTGATCACCCATGCCTAGCACATTTCACGGTGTGTGTTGTCT
GCTTTCCACTTTCCGCATGCGCTGTTGTTTTGTTGGGCTGTGCTTGAGGG
GGGTTTTGCTCCGTTCACGTTCCAAATGCGTTCGGGATCTATGCTCGGTC
GAAATGCTTTTGCTGTGGTGCTAGATATTGTATTGTTGCCGGCAGACGCG
AAGTCGCGTCCACGCGCATTTGCTAAACGATTTCGTTCTGTGTTGGTGCG
TGTGTGCATGATAGCTTGTCGAGAATAAACATGTTTCTTGCAACGCCGAT
CGCGCTTCATCAACCAATAAATATCTTCAAATTAACTTTGCTTTGCTCTC
CTTGCTACAGGAGGCCGAGGTTGGTCGGGAGGAATGGATGCTCGTGCCGC
CCAAGTCTCTCGGTGTATTAGGCGCTATCAAGACCTTGCAGCCCACCAAT
CGTAAATTCCAAACGTAAGTCAGCCGCCGCCATGTGATTGGTGCTGTACC
TTTGAGTATTTGCTGAGACCGGGGAGGGAGGAGGCCCCGAAAATGCGGAT
CGTACGGTACAAGCTGGCCGCAGTGCGATTAACGACGGAGGCACACACAA
CGGTGGGCATTTGTCACACCGTGTGTCTGCCCTTGAACGACTGGGTAACA
ATTCCATTCCAAACTTTGCATGTCGCTCTTCTGACTGACACTTATCAAGC
GTTTTTCTAGTCTTCGCCCCTCCAACCCATCCCTCCGCCCCTTTCCCCCT
CTCTGTCGTGCTCTCCTTATGTTTAGTCGCTCGGCGAGAGGTGCGCGTGC
GGATCTCCATGCCCCGAAAGCTCCGAAATCGAAAGCAGAGATGGAAGCTG
AAGCGGCGGCGGAGGAACTTATGGCCAAGCACCGGGAGGTATGAGTGACA
CTTGCAAACTATTCCGCCCGTGCTTGTACATTTTTCAAATCCATGCAAAC
TTCAGCGGTCAAGCGTCTTCGTTTACTGCTGATACACATACCCATTCTAG
CGTTCCCGGTAGGACGTGCCGCATGTGCCGTGGGTTGGGGCTCCTCATTC
GTTGCGGAATCCCGACGTCGTGGCCCTTTTTCAGTCGGGAAACATTGCTT
TCGGTGCGTATCCATCCGGTTGATTATTTCCTACATGTTCCAGAATCTCT
CAAGTCCTAGTGAATGACGTACCCCCTTGGTGTTCGTCTGCAATCTCTGT
TCCAGGCGGGTCTTTTGAAGGGGTAGTGCTGCTTTTGGTTTTGTTACCAA
CAAGTCGCGGTTCGGTCAATAATTTATTTGTGTTGTTGTGTTTGGTCGAA
GTTGGGGCGTTTTTATTTTTTGCAACAGTTTTGAACTGAGTTCAGTGTTG
TCACCATGTTTTCATTTAGGGAAGGTATATTGACGTATTCCAGAGGGCGC
CAAGTTTTTTGAAACGGGTACATTTCTAGGATCTGCACAGATTTGGATGA
ATTGGACCAATATGTTCTCGTTTTGGGGTCATCTCTCGGTGTTTTTACGG
TAGTGGAATTTACGCAGATTTTTTTCACGCTATTGCATGGATTCCTCTTT
TCCTCGCGGTTGGTGCGACCCTTGGTATAGTGTCAACTCTCAACATGTTG
CGTAAAGAGTGGAAATCATGGTTGGCAAACATTCAACCGGATGAACTCTA
AAACATCGAATGCTCGGGAACGACCGTCATTGAAAGGTGCCTTTTGATGC
TTGACCCCTTTTGGCCGTAGGCGCGAGGCGCCTCACTGGTGGAGAGGCAC
GCGAGCGACGTCAGCAAAGCCAAAAAGGCGGCGGGTGGAAGGGACGGCGG
CAAGAAGACCTTCTCCTGGAGCCGAGAGGACGACTTCGAGCAACGAAAAA
AATTTACCCCCCAGGTGAAATGCTTCATTGCAAAGACTCGTTGCGTAGAG
CACGTTCGTATTGCTTTTCTACATGGCACAAGCCTGCGGTTGAGCGACAA
CGCGACCATGGATAACGCCCTCCGTGTTGATTCTAACTCGAGGTTGGTAG
GTTGTAACACGGATGTGTTCCTGTGCAGCTGGGGGCTTGTCTGGGGTCTG
GGGTATCTCTTTCAACACTAGATATGACGAAGCTCAGAGGATACAGTTCA
CGGGCTTCCTTTAGTTTTCTTCTACGATATTACGTGTGCGTTCGTCCCAA
TCTGGGCGAGACCTTCCTCCAGCATGGGGGATGTCTCTCCCTCTGTTAGC
GGGTTCCATGTCGCACTACTACAAGTCTGAAACTTTTTGCTTTGCCGCCC
CGTGTTTGCCGTTTGCCAGATGTACGAAGAACTGGTGCAAAAGTCCCAAG
AGCTGGACTCGAAGTTCTCCAGATCAATATCCAGAAACTTTTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5903:2..2998+

>mRNA_Ecto-sp13_S_contig5903.16429.1 ID=mRNA_Ecto-sp13_S_contig5903.16429.1|Name=mRNA_Ecto-sp13_S_contig5903.16429.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5903:2..2998+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGGCCCGGCACCTCGTAGGGCCCCTATTGGTCCAGCCATGCCTTCCCA
AGCCATGCTCGCCCAGGCACAACAGGCAGCGAAGGACTTTGTCCAGGAGG
ACTCTTCATCTGACGACGATGAAGATCATTTCGGGCCGTCCGTCGCCGGC
AAAGAGAAACGCGTCGCATCCGAACGAGCGGACCCGAACCGAGCCAAACG
GCAGAAACGGCAGGAGTTGAAGCGTGCGGCCGAGTGGGAGAATGCCACTG
GTGTTATCACAGGAGGGCAGGCTGCGCTCGACAAGGCGGAGGCCGAGGTT
GGTCGGGAGGAATGGATGCTCGTGCCGCCCAAGTCTCTCGGTGTATTAGG
CGCTATCAAGACCTTGCAGCCCACCAATCGTAAATTCCAAACTCGCTCGG
CGAGAGGTGCGCGTGCGGATCTCCATGCCCCGAAAGCTCCGAAATCGAAA
GCAGAGATGGAAGCTGAAGCGGCGGCGGAGGAACTTATGGCCAAGCACCG
GGAGGCGCGAGGCGCCTCACTGGTGGAGAGGCACGCGAGCGACGTCAGCA
AAGCCAAAAAGGCGGCGGGTGGAAGGGACGGCGGCAAGAAGACCTTCTCC
TGGAGCCGAGAGGACGACTTCGAGCAACGAAAAAAATTTACCCCCCAGAT
GTACGAAGAACTGGTGCAAAAGTCCCAAGAGCTGGACTCGAAGTTCTCCA
GATCAATATCCAGAAACTTTTTGTGA
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