mRNA_Ecto-sp13_S_contig5900.16425.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5900.16425.1
Unique NamemRNA_Ecto-sp13_S_contig5900.16425.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5900.16425.1 vs. uniprot
Match: A0A2D4FT12_MICCO (Calglandulin (Fragment) n=1 Tax=Micrurus corallinus TaxID=54390 RepID=A0A2D4FT12_MICCO)

HSP 1 Score: 151 bits (381), Expect = 2.680e-45
Identity = 78/86 (90.70%), Postives = 78/86 (90.70%), Query Frame = -2 
Query:   33 PNTMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 290
            P TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA      DFPEFLTMMARKMKDTDSE
Sbjct:   23 PVTMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 108
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BLAST of mRNA_Ecto-sp13_S_contig5900.16425.1 vs. uniprot
Match: A0A6I9Y550_9SAUR (calmodulin-like n=1 Tax=Thamnophis sirtalis TaxID=35019 RepID=A0A6I9Y550_9SAUR)

HSP 1 Score: 151 bits (381), Expect = 5.800e-45
Identity = 78/86 (90.70%), Postives = 78/86 (90.70%), Query Frame = -2 
Query:   33 PNTMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 290
            P TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA      DFPEFLTMMARKMKDTDSE
Sbjct:    5 PVTMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 90
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BLAST of mRNA_Ecto-sp13_S_contig5900.16425.1 vs. uniprot
Match: CALM_SACJA (Calmodulin n=28 Tax=Eukaryota TaxID=2759 RepID=CALM_SACJA)

HSP 1 Score: 149 bits (377), Expect = 1.900e-44
Identity = 77/83 (92.77%), Postives = 77/83 (92.77%), Query Frame = -2 
Query:   33 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 281
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDA      DFPEFLTMMARKMKDTDSE
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 83
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BLAST of mRNA_Ecto-sp13_S_contig5900.16425.1 vs. uniprot
Match: A0A3P8WSQ1_CYNSE (Calmodulin n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8WSQ1_CYNSE)

HSP 1 Score: 151 bits (381), Expect = 2.240e-44
Identity = 83/87 (95.40%), Postives = 83/87 (95.40%), Query Frame = -2 
Query:   33 TPNTMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 293
            TP  MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDAXXXXX DFPEFLTMMARKMKDTDSE
Sbjct:   49 TPPDMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAXXXXXIDFPEFLTMMARKMKDTDSE 135
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BLAST of mRNA_Ecto-sp13_S_contig5900.16425.1 vs. uniprot
Match: A0A3Q3JYR6_MONAL (Calmodulin-alpha-like n=2 Tax=Monopterus albus TaxID=43700 RepID=A0A3Q3JYR6_MONAL)

HSP 1 Score: 149 bits (377), Expect = 2.280e-44
Identity = 77/85 (90.59%), Postives = 77/85 (90.59%), Query Frame = -2 
Query:   33 NTMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 287
            NT ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA      DFPEFLTMMARKMKDTDSE
Sbjct:    5 NTKADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 89
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BLAST of mRNA_Ecto-sp13_S_contig5900.16425.1 vs. uniprot
Match: L8IZ76_9CETA (Uncharacterized protein (Fragment) n=2 Tax=Bos mutus TaxID=72004 RepID=L8IZ76_9CETA)

HSP 1 Score: 149 bits (377), Expect = 2.660e-44
Identity = 77/84 (91.67%), Postives = 77/84 (91.67%), Query Frame = -2 
Query:   33 TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 284
            TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA      DFPEFLTMMARKMKDTDSE
Sbjct:   20 TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 103
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BLAST of mRNA_Ecto-sp13_S_contig5900.16425.1 vs. uniprot
Match: A0A2D4ICZ1_MICLE (Calglandulin (Fragment) n=1 Tax=Micrurus lemniscatus lemniscatus TaxID=129467 RepID=A0A2D4ICZ1_MICLE)

HSP 1 Score: 149 bits (377), Expect = 3.390e-44
Identity = 77/84 (91.67%), Postives = 77/84 (91.67%), Query Frame = -2 
Query:   33 TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 284
            TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA      DFPEFLTMMARKMKDTDSE
Sbjct:    1 TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 84
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BLAST of mRNA_Ecto-sp13_S_contig5900.16425.1 vs. uniprot
Match: A0A8D3AJ33_SCOMX (Uncharacterized protein n=2 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3AJ33_SCOMX)

HSP 1 Score: 152 bits (383), Expect = 3.490e-44
Identity = 78/87 (89.66%), Postives = 78/87 (89.66%), Query Frame = -2 
Query:   33 TPNTMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 293
            TP  MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA      DFPEFLTMMARKMKDTDSE
Sbjct:   89 TPTDMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 175
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5900.16425.1 vs. uniprot
Match: A0A8D8J1U1_CULPI (Calmodulin (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8J1U1_CULPI)

HSP 1 Score: 147 bits (372), Expect = 3.610e-44
Identity = 76/83 (91.57%), Postives = 76/83 (91.57%), Query Frame = -2 
Query:   33 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 281
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA      DFPEFLTMMARKMKDTDSE
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 83
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5900.16425.1 vs. uniprot
Match: A0A2D4ICV0_MICLE (Calglandulin (Fragment) n=1 Tax=Micrurus lemniscatus lemniscatus TaxID=129467 RepID=A0A2D4ICV0_MICLE)

HSP 1 Score: 149 bits (377), Expect = 3.710e-44
Identity = 77/84 (91.67%), Postives = 77/84 (91.67%), Query Frame = -2 
Query:   33 TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDAXXXXXXDFPEFLTMMARKMKDTDSE 284
            TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDA      DFPEFLTMMARKMKDTDSE
Sbjct:    1 TMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSE 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5900.16425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4FT12_MICCO2.680e-4590.70Calglandulin (Fragment) n=1 Tax=Micrurus corallinu... [more]
A0A6I9Y550_9SAUR5.800e-4590.70calmodulin-like n=1 Tax=Thamnophis sirtalis TaxID=... [more]
CALM_SACJA1.900e-4492.77Calmodulin n=28 Tax=Eukaryota TaxID=2759 RepID=CAL... [more]
A0A3P8WSQ1_CYNSE2.240e-4495.40Calmodulin n=1 Tax=Cynoglossus semilaevis TaxID=24... [more]
A0A3Q3JYR6_MONAL2.280e-4490.59Calmodulin-alpha-like n=2 Tax=Monopterus albus Tax... [more]
L8IZ76_9CETA2.660e-4491.67Uncharacterized protein (Fragment) n=2 Tax=Bos mut... [more]
A0A2D4ICZ1_MICLE3.390e-4491.67Calglandulin (Fragment) n=1 Tax=Micrurus lemniscat... [more]
A0A8D3AJ33_SCOMX3.490e-4489.66Uncharacterized protein n=2 Tax=Scophthalmus maxim... [more]
A0A8D8J1U1_CULPI3.610e-4491.57Calmodulin (Fragment) n=1 Tax=Culex pipiens TaxID=... [more]
A0A2D4ICV0_MICLE3.710e-4491.67Calglandulin (Fragment) n=1 Tax=Micrurus lemniscat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5900contigEcto-sp13_S_contig5900:284..580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score120.2
Seed ortholog evalue5.6e-25
Seed eggNOG ortholog157072.XP_008863728.1
Model size297
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2E3K2@1,2SAMP@2759
Cds size297
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463820.586984-CDS-Ecto-sp13_S_contig5900:283..5801681463820.586984-CDS-Ecto-sp13_S_contig5900:283..580Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5900 284..580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5900.16425.1prot_Ecto-sp13_S_contig5900.16425.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5900 284..580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5900.16425.1

>prot_Ecto-sp13_S_contig5900.16425.1 ID=prot_Ecto-sp13_S_contig5900.16425.1|Name=mRNA_Ecto-sp13_S_contig5900.16425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
MIQPSTFFCLTSESVSFIFRAIMVRNSGKSIVPFPSASTSLIMSASSASV
GFCPSERMTVPSSLVVMVPSPSLSKRLKASLNSAICSSVSWSAMVFGV*
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mRNA from alignment at Ecto-sp13_S_contig5900:284..580+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5900.16425.1 ID=mRNA_Ecto-sp13_S_contig5900.16425.1|Name=mRNA_Ecto-sp13_S_contig5900.16425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5900:284..580+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCCAGCCCTCTACTTTTTTCTGTCTTACCTCGGAGTCCGTGTCCTT
CATCTTCCGTGCCATCATGGTCAGGAACTCAGGGAAGTCGATAGTTCCGT
TTCCATCCGCGTCCACCTCGTTGATCATGTCTGCAAGCTCGGCTTCGGTG
GGGTTTTGCCCCAGCGAACGCATGACCGTACCGAGCTCCTTGGTCGTGAT
GGTGCCGTCGCCGTCCTTGTCAAAGAGGCTGAAAGCTTCCTTGAACTCAG
CGATTTGCTCCTCGGTCAGTTGGTCCGCCATGGTGTTCGGTGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5900:284..580+

>mRNA_Ecto-sp13_S_contig5900.16425.1 ID=mRNA_Ecto-sp13_S_contig5900.16425.1|Name=mRNA_Ecto-sp13_S_contig5900.16425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5900:284..580+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCCAGCCCTCTACTTTTTTCTGTCTTACCTCGGAGTCCGTGTCCTT
CATCTTCCGTGCCATCATGGTCAGGAACTCAGGGAAGTCGATAGTTCCGT
TTCCATCCGCGTCCACCTCGTTGATCATGTCTGCAAGCTCGGCTTCGGTG
GGGTTTTGCCCCAGCGAACGCATGACCGTACCGAGCTCCTTGGTCGTGAT
GGTGCCGTCGCCGTCCTTGTCAAAGAGGCTGAAAGCTTCCTTGAACTCAG
CGATTTGCTCCTCGGTCAGTTGGTCCGCCATGGTGTTCGGTGTTTGA
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