prot_Ecto-sp13_S_contig5897.16415.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5897.16415.1
Unique Nameprot_Ecto-sp13_S_contig5897.16415.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length137
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5897.16415.1 vs. uniprot
Match: A0A6H5L354_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L354_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 3.640e-89
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0 
Query:    1 VERPGISAYLTCGRDGAIKFWNKGTFAHYRTIRHLDTMKAAYEIIITGGKGREVDGNGRRVCSAEVNRAVKSMKSAWVYDIQQMPLSNRIAAACFDRTVSFYDVLTGEFVCRIGGLRSSPTCVDCVDTGA 130
            VERPGISAYLTCGRDGAIKFWNKGTFAHYRTIRHLDTMKAAYEIIITGGKGREVDGNGRRVCSAEVNRAVKSMKSAWVYDIQQMPLSNRIAAACFDRTVSFYDVLTGEFVCRIGGLRSSPTCVDCV+  A
Sbjct:  113 VERPGISAYLTCGRDGAIKFWNKGTFAHYRTIRHLDTMKAAYEIIITGGKGREVDGNGRRVCSAEVNRAVKSMKSAWVYDIQQMPLSNRIAAACFDRTVSFYDVLTGEFVCRIGGLRSSPTCVDCVEISA 242
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BLAST of mRNA_Ecto-sp13_S_contig5897.16415.1 vs. uniprot
Match: D7FNP2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP2_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 3.310e-52
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = 0 
Query:    1 VERPGISAYLTCGRDGAIKFWNKGTFAHYRTIRHLDTMKAAYEIIITGGKGREVDGNGRRVCSAEVNRAVKSMKSAWVYDIQQM 84
            VERPGISAYLTCGRDGAIKFWNKGTFAHYRTIRHLDTMKAAYEIIITGGKGREVDGNGRRVCSAEVNRAVKSMKSAW+YDIQQ+
Sbjct:  193 VERPGISAYLTCGRDGAIKFWNKGTFAHYRTIRHLDTMKAAYEIIITGGKGREVDGNGRRVCSAEVNRAVKSMKSAWIYDIQQV 276
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5897.16415.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L354_9PHAE3.640e-8997.69EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7FNP2_ECTSI3.310e-5297.62EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 10..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5897contigEcto-sp13_S_contig5897:6426..8568 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5897.16415.1mRNA_Ecto-sp13_S_contig5897.16415.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5897 6426..8570 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5897.16415.1 ID=prot_Ecto-sp13_S_contig5897.16415.1|Name=mRNA_Ecto-sp13_S_contig5897.16415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
VERPGISAYLTCGRDGAIKFWNKGTFAHYRTIRHLDTMKAAYEIIITGGK
GREVDGNGRRVCSAEVNRAVKSMKSAWVYDIQQMPLSNRIAAACFDRTVS
FYDVLTGEFVCRIGGLRSSPTCVDCVDTGANEQQVLF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf