mRNA_Ecto-sp13_S_contig5897.16415.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5897.16415.1
Unique NamemRNA_Ecto-sp13_S_contig5897.16415.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5897.16415.1 vs. uniprot
Match: A0A6H5L354_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L354_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 3.640e-89
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 1 
Query:    1 VERPGISAYLTCGRDGAIKFWNKGTFAHYRTIRHLDTMKAAYEIIITGGKGREVDGNGRRVCSAEVNRAVKSMKSAWVYDIQQMPLSNRIAAACFDRTVSFYDVLTGEFVCRIGGLRSSPTCVDCVDTGA 390
            VERPGISAYLTCGRDGAIKFWNKGTFAHYRTIRHLDTMKAAYEIIITGGKGREVDGNGRRVCSAEVNRAVKSMKSAWVYDIQQMPLSNRIAAACFDRTVSFYDVLTGEFVCRIGGLRSSPTCVDCV+  A
Sbjct:  113 VERPGISAYLTCGRDGAIKFWNKGTFAHYRTIRHLDTMKAAYEIIITGGKGREVDGNGRRVCSAEVNRAVKSMKSAWVYDIQQMPLSNRIAAACFDRTVSFYDVLTGEFVCRIGGLRSSPTCVDCVEISA 242
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BLAST of mRNA_Ecto-sp13_S_contig5897.16415.1 vs. uniprot
Match: D7FNP2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP2_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 3.310e-52
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 VERPGISAYLTCGRDGAIKFWNKGTFAHYRTIRHLDTMKAAYEIIITGGKGREVDGNGRRVCSAEVNRAVKSMKSAWVYDIQQM 252
            VERPGISAYLTCGRDGAIKFWNKGTFAHYRTIRHLDTMKAAYEIIITGGKGREVDGNGRRVCSAEVNRAVKSMKSAW+YDIQQ+
Sbjct:  193 VERPGISAYLTCGRDGAIKFWNKGTFAHYRTIRHLDTMKAAYEIIITGGKGREVDGNGRRVCSAEVNRAVKSMKSAWIYDIQQV 276
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5897.16415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L354_9PHAE3.640e-8997.69EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7FNP2_ECTSI3.310e-5297.62EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5897contigEcto-sp13_S_contig5897:6426..8570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start0
Seed ortholog score63.2
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog3067.XP_002955082.1
Model size414
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.WD repeat-containing protein
EggNOG OGs34KY0@3041,3805Z@33090,KOG0266@1,KOG0266@2759
Cds size411
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463819.4882576-CDS-Ecto-sp13_S_contig5897:6425..65661681463819.4882576-CDS-Ecto-sp13_S_contig5897:6425..6566Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5897 6426..6566 +
1681463819.5046477-CDS-Ecto-sp13_S_contig5897:6957..70651681463819.5046477-CDS-Ecto-sp13_S_contig5897:6957..7065Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5897 6958..7065 +
1681463819.5181148-CDS-Ecto-sp13_S_contig5897:8160..82921681463819.5181148-CDS-Ecto-sp13_S_contig5897:8160..8292Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5897 8161..8292 +
1681463819.5324144-CDS-Ecto-sp13_S_contig5897:8538..85681681463819.5324144-CDS-Ecto-sp13_S_contig5897:8538..8568Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5897 8539..8568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5897.16415.1prot_Ecto-sp13_S_contig5897.16415.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5897 6426..8568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5897.16415.1

>prot_Ecto-sp13_S_contig5897.16415.1 ID=prot_Ecto-sp13_S_contig5897.16415.1|Name=mRNA_Ecto-sp13_S_contig5897.16415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
VERPGISAYLTCGRDGAIKFWNKGTFAHYRTIRHLDTMKAAYEIIITGGK
GREVDGNGRRVCSAEVNRAVKSMKSAWVYDIQQMPLSNRIAAACFDRTVS
FYDVLTGEFVCRIGGLRSSPTCVDCVDTGANEQQVLF
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mRNA from alignment at Ecto-sp13_S_contig5897:6426..8570+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5897.16415.1 ID=mRNA_Ecto-sp13_S_contig5897.16415.1|Name=mRNA_Ecto-sp13_S_contig5897.16415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2145bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5897:6426..8570+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGAACGGCCAGGCATCAGCGCGTACCTGACTTGTGGCAGGGACGGCGC
CATCAAGTTCTGGAACAAGGGTACCTTTGCCCACTACCGTACCATCCGGC
ATCTCGACACAATGAAGGCCGCTTACGAAATCATCATCACGGTGAAGGGG
TGCAAAGGGCGAGCGACTTTTGGCGTGATATGTATGCTCTTGTTTGTGTT
CGTTTTAGTGACCTTCGCCACTATTCGAAATAGTTGTCATGGTCACGAGT
ATTCTCCCACAGATAATTATTGTGAATCATTCTGCCTTCTTCCGTTGATC
TTTTCTCGGAACATTTTCGTGTCCCAGTGTTGTTATTGTTGTGTTGAGGT
CGTTCGTTCTAGCACTCCTCGATTTAAACCGGGAAAACCTCGCCTCAGCA
CGGGAGAGAAAGAGGACGACGTGTTTCGGTCGCCAACACCCCTGAGACAT
CAGCAAGCAATTGTGACTACACGACGACAAGGGAGTCGTTGCCCAGCGTT
TCTTTCTCTCGTTTTTCCATTCGTTTTCCCAGGGGGGTAAAGGCAGGGAG
GTAGACGGGAACGGACGAAGAGTCTGCTCGGCGGAGGTGAACAGAGCCGT
CAAATCGATGAAGTCTGCCTGGGTATACGACATCCAACAGGTGACCTTGT
AAGCAAGACAGGAAAGCCAAAATGCTGAAGCGAACTCCGCCCAGAACGGA
TGATCTCCTACACCCTGGGCGGTCGAGTAACGAAGGTTAGCTGGCATATC
CGGCGTGGGGTGAATGATTGCGTGCTCTCCCGCAATACATCGTGCGGGTG
AGTGAGTTGAATGGGAGAGGGCACAAAAAACAACTATAGCAAACCGCGAT
AACTTGGCTTGAGAGTTCTGGAAGCCGGTCGCCGCCGTGATTCCGCTTAC
ATACTCTGTGCGTCAAGCTTGTGACGGCCCGGTCTGGTTTTCAATCCCCC
GCAAAGTGTGTTTTGTTCTTTTCATGCAAAGTACTCTCGATTGTTTGCTT
CTTTGTGAGCAAGCTTGACCAGTTTAACTCCTGGGGCCTTCTCGTGTTCA
AGCCGGACGCAGGCACCAGCGAGGATCAGATTTTTACGATTAAGAAAAGC
ACGGTCGCGTTACTGTTTGAACCTGCAGCCGACGGCTATGTACGCCCTTT
TGGAGGCGAATGAAGAATATATGAGATTTAACGGATTTTTGTCGGGCCAA
CCAACTCACTACCAAGTTTTCTTTCTGCAACGTTTGTTTGTGTCGCAGCA
GCGTGAACATGAGACAGCCGGTCCACTTCTCTACGTATCCTACCTAGCAC
AAAGAAGCAAACGTATCGGCGATGCTTCGCCAGTCGCGGTGTGCTTTCTT
CACGAGTCTTTGTTGCCCGCAAAAAGAGAGAAGAATTTCAAGGGTGCCGA
CTCGAACGCTCTGTCATCTCGTACCACCTGTAAGAAACAAACCCAGGCGA
GAAAGATGGAAGCAGTTACACACTTAGACACTAACAAATCATACCCAACG
TGTAGTGCATGGGCAACTGCCAATCCCATGTTTCTTTTCCTTCCTTGTCT
TCGTCCTCCCGGTATGATACTGACAACCCTGTGTCCCCCTCCCTTCCTCC
CTTCTCTCGGTCGACGGTGTCTGCACCTCCCCGCACCGCTGCTGGGGTGG
TGGCCGGCGGCTCCTGTCGCACCGGTGGGGTCCTCCTTCTCACCTGCAAA
CGGGTGGTCGACCGGCCGGCCTTCCGATCGACTAGATGCCCCTCTCGAAT
AGAATCGCGGCGGCTTGTTTCGACCGCACCGTGAGCTTCTACGACGTTCT
CACGGGGGAGTTCGTTTGCCGGATCGGTGGCCTACGCTCGTCCCCTACTT
GCGTGGACTGTGTCGACGTAAGACCAGCCGGCGGTTCGTTGTTGCGTTGG
CTGTTGCGTGTCTCTCTGCGTAGTAACCGTGTTTGTTGTCCAGGGCCAAA
AGGTGTTCCTTTTCCTTTGTTGGCATCGACCACTTTTGTGTGTCTTGTTG
TGACACAGATTCAGCCTGAACCATACAGTATCTTGTCGAAGCCGGATCGC
TCGTGGCACCCACCTTTGTTGCTATAGGATACAACTTTATTTCTCCGCCT
CGTTTTTTTACAGACTGGGGCCAACGAGCAGCAAGTACTATTCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5897:6426..8570+

>mRNA_Ecto-sp13_S_contig5897.16415.1 ID=mRNA_Ecto-sp13_S_contig5897.16415.1|Name=mRNA_Ecto-sp13_S_contig5897.16415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5897:6426..8570+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGAACGGCCAGGCATCAGCGCGTACCTGACTTGTGGCAGGGACGGCGC
CATCAAGTTCTGGAACAAGGGTACCTTTGCCCACTACCGTACCATCCGGC
ATCTCGACACAATGAAGGCCGCTTACGAAATCATCATCACGGGGGGTAAA
GGCAGGGAGGTAGACGGGAACGGACGAAGAGTCTGCTCGGCGGAGGTGAA
CAGAGCCGTCAAATCGATGAAGTCTGCCTGGGTATACGACATCCAACAGA
TGCCCCTCTCGAATAGAATCGCGGCGGCTTGTTTCGACCGCACCGTGAGC
TTCTACGACGTTCTCACGGGGGAGTTCGTTTGCCGGATCGGTGGCCTACG
CTCGTCCCCTACTTGCGTGGACTGTGTCGACACTGGGGCCAACGAGCAGC
AAGTACTATTC
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