mRNA_Ecto-sp13_S_contig5896.16413.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5896.16413.1
Unique NamemRNA_Ecto-sp13_S_contig5896.16413.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5896.16413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5896contigEcto-sp13_S_contig5896:2..595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size503
Hectar predicted targeting categoryother localisation
Exons2
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463819.3706713-UTR-Ecto-sp13_S_contig5896:1..1261681463819.3706713-UTR-Ecto-sp13_S_contig5896:1..126Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5896 2..126 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463819.3878782-CDS-Ecto-sp13_S_contig5896:126..2831681463819.3878782-CDS-Ecto-sp13_S_contig5896:126..283Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5896 127..283 -
1681463819.399822-CDS-Ecto-sp13_S_contig5896:374..5951681463819.399822-CDS-Ecto-sp13_S_contig5896:374..595Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5896 375..595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5896.16413.1prot_Ecto-sp13_S_contig5896.16413.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5896 127..595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5896.16413.1

>prot_Ecto-sp13_S_contig5896.16413.1 ID=prot_Ecto-sp13_S_contig5896.16413.1|Name=mRNA_Ecto-sp13_S_contig5896.16413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
MYWITRIQEREGALQQEISCASNEVRGDRTTRRRIWYRCITQQRTTQSCA
VHIRGDTSSPPSLLHVLNNSLRNHSSKTVRVLYILIHEPIIHIVSAICLR
PTGKKTTSTNQRETQSHGKFREKVY*
back to top

mRNA from alignment at Ecto-sp13_S_contig5896:2..595-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5896.16413.1 ID=mRNA_Ecto-sp13_S_contig5896.16413.1|Name=mRNA_Ecto-sp13_S_contig5896.16413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=594bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5896:2..595- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATTGGATCACCCGTATACAAGAGCGAGAGGGAGCGTTACAGCAAGA
GATAAGTTGCGCCAGCAACGAGGTCCGAGGTGACCGTACCACCCGCAGAC
GCATTTGGTATCGGTGCATCACACAGCAGAGGACGACACAGTCGTGTGCA
GTACATATCAGAGGAGATACGTCATCCCCTCCCTCTTTGCTCCACGTACT
AAACAACTCCTTACGCAATCAGCAGTTGGGACGACAGTACAGGTGAGGTA
GCCAACAATCCGAACGGCAACAGCAGTACAGGTGAGGTAGCCAACAATCC
GAACGGCAACAGCTCAAGCAAAACCGTGCGGGTTCTCTACATACTAATTC
ATGAACCAATAATACATATCGTATCCGCCATTTGTCTGCGACCAACAGGT
AAAAAAACAACCAGCACCAACCAACGCGAGACACAGTCGCATGGCAAGTT
TCGCGAGAAGGTGTACTGACATCATCACCTCAAGACATCACCAGCAACAG
CAACAACGACGCCGCAAGGCAAACGTTCGTGAGAGGCTGTACTGACATTA
CCACTCCTCCACAAGATGGCCACAACAAGACACCTGCAACAACA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5896:2..595-

>mRNA_Ecto-sp13_S_contig5896.16413.1 ID=mRNA_Ecto-sp13_S_contig5896.16413.1|Name=mRNA_Ecto-sp13_S_contig5896.16413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5896:2..595- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATTGGATCACCCGTATACAAGAGCGAGAGGGAGCGTTACAGCAAGA
GATAAGTTGCGCCAGCAACGAGGTCCGAGGTGACCGTACCACCCGCAGAC
GCATTTGGTATCGGTGCATCACACAGCAGAGGACGACACAGTCGTGTGCA
GTACATATCAGAGGAGATACGTCATCCCCTCCCTCTTTGCTCCACGTACT
AAACAACTCCTTACGCAATCACTCAAGCAAAACCGTGCGGGTTCTCTACA
TACTAATTCATGAACCAATAATACATATCGTATCCGCCATTTGTCTGCGA
CCAACAGGTAAAAAAACAACCAGCACCAACCAACGCGAGACACAGTCGCA
TGGCAAGTTTCGCGAGAAGGTGTACTGA
back to top