mRNA_Ecto-sp13_S_contig5894.16412.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5894.16412.1
Unique NamemRNA_Ecto-sp13_S_contig5894.16412.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5894.16412.1 vs. uniprot
Match: D8LB29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB29_ECTSI)

HSP 1 Score: 385 bits (990), Expect = 6.390e-120
Identity = 431/491 (87.78%), Postives = 436/491 (88.80%), Query Frame = 1 
Query:   85 PVQTRGACRSMSGAAIPQLRLGAGIAASPQQLEDSVAAHAQRRTRSSKLTVYPVPDKPVSLDVVHWRRIRRKETRCSYGRPQPRTNVQRCYGPELTEHLTRSYVLRGYHLRVLVAHNAEVCLRAGLEAMAHTWRMLGILLSGVPGGLLLPLGSSAPDVDVAGIDKGMAAAVXXXXXXXXXXXXXXXAAGVEGRSCVDPASAGRERDFSVPEVLDLIDQHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXM-WQPLPSRGHLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTVRGARPDRQERLRDEVALGWLWKSEVRDWLSAMSEAGFAYDTLAVLEVVR 1554
            P   RG  +SMSGAAIPQLRLGAG+AAS QQLEDSVAAH QRR RSSKLTVYPVPDKPVSLDVVHWRRIRRKETRCSYGRPQPRTNVQRCYGPELTEHLTRSYVLRGYHLRVLVAHNAEVCLRAGLEAMAHTWRMLGILLSGVPGGLLLPLGSSAPD+DVAGIDKGMAAAV XXXXXXXXXXXXXX  GV GR  VDPA+AG+ERDFSVPEVLDLIDQHEXXXXXX                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  WQPLPSRGH   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX T RG RPDRQERL DEVALGWLWKSEVRDWLSAMSEAGFAYDTLAVLEVVR
Sbjct:  515 PSLARG--QSMSGAAIPQLRLGAGMAASQQQLEDSVAAHPQRRARSSKLTVYPVPDKPVSLDVVHWRRIRRKETRCSYGRPQPRTNVQRCYGPELTEHLTRSYVLRGYHLRVLVAHNAEVCLRAGLEAMAHTWRMLGILLSGVPGGLLLPLGSSAPDIDVAGIDKGMAAAVAXXXXXXXXXXXXXXXXGVGGRRNVDPATAGKERDFSVPEVLDLIDQHEXXXXXXKAGKPSLERQLTPEQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWQPLPSRGHX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRATEPVWWEHDDRANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGRGGRPDRQERLNDEVALGWLWKSEVRDWLSAMSEAGFAYDTLAVLEVVR 1001
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BLAST of mRNA_Ecto-sp13_S_contig5894.16412.1 vs. uniprot
Match: A0A6H5KM86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM86_9PHAE)

HSP 1 Score: 308 bits (788), Expect = 8.890e-94
Identity = 366/459 (79.74%), Postives = 370/459 (80.61%), Query Frame = 1 
Query:  199 HAQRRTRSSKLTVYPVPDKPVSLDVVHWRRIRRKETRCSYGRPQPRTNVQRCYGPELTEHLTRSYVLRGYHLRVLVAHNAEVCLRAGLEAMAHTWRMLGILLSGVPGGLLLPLGSSAPDVDVAGIDKGMAAAVXXXXXXXXXXXXXXXAAGVEGRSCVDPASAGRERDFSVPEVLDLIDQHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMWQPLPSRGHLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV-------TVRGARPDRQERLRDEVALGWLWKSEVRDWLSAMSEAGFAYDTLAVLEVVR 1554
            H   +  SSKLTVYPVPDKPVSLDVVHWRRIRRKETRCSYGRPQPRTNVQRCYGPELTEHLTRSYVLRGYHLRVLVAHNAEVCLRAGLEAMAHTWRMLGILLSGVPGGLLLPLGSSAPD+DVAGID GMAAAVXXXXXXXXXXXXXXXA GV GR  VDPA+AGRER+FSVPEVLDLIDQHE  XX                                                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         VRG RPDRQERLRDEVALGWLWKSEVRDWLSAMSEAGFAYDTLAVLEVVR
Sbjct:    2 HRGEKGGSSKLTVYPVPDKPVSLDVVHWRRIRRKETRCSYGRPQPRTNVQRCYGPELTEHLTRSYVLRGYHLRVLVAHNAEVCLRAGLEAMAHTWRMLGILLSGVPGGLLLPLGSSAPDIDVAGIDNGMAAAVXXXXXXXXXXXXXXXATGVGGRRKVDPATAGRERNFSVPEVLDLIDQHEEEXXEDKAGKPSLERQLTPEQRQRQLNLAPPPSRQPGRVPKTARGLVAAGGGSGDLKLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVRGGRPDRQERLRDEVALGWLWKSEVRDWLSAMSEAGFAYDTLAVLEVVR 460
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5894.16412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB29_ECTSI6.390e-12087.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM86_9PHAE8.890e-9479.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5894contigEcto-sp13_S_contig5894:629..3715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score386.3
Seed ortholog evalue2e-104
Seed eggNOG ortholog2880.D8LB29
Model size1557
KEGG koko:K20408
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.positive regulation of TOR signaling
EggNOG OGsKOG0269@1,KOG0269@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-27_005450.1
Cds size1443
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463819.2923167-UTR-Ecto-sp13_S_contig5894:628..7421681463819.2923167-UTR-Ecto-sp13_S_contig5894:628..742Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5894 629..742 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463819.3144825-CDS-Ecto-sp13_S_contig5894:742..8461681463819.3144825-CDS-Ecto-sp13_S_contig5894:742..846Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5894 743..846 +
1681463819.3257246-CDS-Ecto-sp13_S_contig5894:1492..16631681463819.3257246-CDS-Ecto-sp13_S_contig5894:1492..1663Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5894 1493..1663 +
1681463819.3379374-CDS-Ecto-sp13_S_contig5894:2198..25061681463819.3379374-CDS-Ecto-sp13_S_contig5894:2198..2506Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5894 2199..2506 +
1681463819.3463957-CDS-Ecto-sp13_S_contig5894:2855..37151681463819.3463957-CDS-Ecto-sp13_S_contig5894:2855..3715Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5894 2856..3715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5894.16412.1prot_Ecto-sp13_S_contig5894.16412.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5894 743..3715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5894.16412.1

>prot_Ecto-sp13_S_contig5894.16412.1 ID=prot_Ecto-sp13_S_contig5894.16412.1|Name=mRNA_Ecto-sp13_S_contig5894.16412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=481bp
MSGAAIPQLRLGAGIAASPQQLEDSVAAHAQRRTRSSKLTVYPVPDKPVS
LDVVHWRRIRRKETRCSYGRPQPRTNVQRCYGPELTEHLTRSYVLRGYHL
RVLVAHNAEVCLRAGLEAMAHTWRMLGILLSGVPGGLLLPLGSSAPDVDV
AGIDKGMAAAVATATAAAGGGSGGGGAAGVEGRSCVDPASAGRERDFSVP
EVLDLIDQHEEEEEDKAGKSSLERRLTPEQRQQQLNLAPPPPRQPGRPAT
TARGLVAAGGGSGDLKLPPRRPAAAAHPTVAIASTTSPAAAATTSSESVS
SSSRHGTRSQNSATFGGGGGPPMWQPLPSRGHLPPSSAGAAAVAYTATTA
DDEEDDGGGGDGGDSDGYTTATISFAATESVWWEHDDRANRGGGGRVSSQ
AAAAAARAARARAGEGATRNGGGGGGGGVTVRGARPDRQERLRDEVALGW
LWKSEVRDWLSAMSEAGFAYDTLAVLEVVR*
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mRNA from alignment at Ecto-sp13_S_contig5894:629..3715+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5894.16412.1 ID=mRNA_Ecto-sp13_S_contig5894.16412.1|Name=mRNA_Ecto-sp13_S_contig5894.16412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3087bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5894:629..3715+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTGCGCCCGTTGATCCGTTGCCCGGTGTAAAACCTAGAGATGAACAAA
GCCACATTTCCACTCGGTTTTCGCGGTTTTCTTCCCTGTGCAAACTCGCG
GTGCGTGCAGGAGCATGTCGGGAGCAGCAATACCGCAGTTGAGGCTTGGC
GCTGGAATAGCGGCGTCACCGCAACAGTTGGAAGACTCGGTTGCAGCACA
TGCACAGAGGAGAACGAGGTGGGTCTGGCTGGTGTGTTTCCTGCCTTGTA
TCTTTCGCAGTAACCAGGTTTTGTATGGCTCAGGAAGTGGGCGGGCAGTG
ACTGGCACGCTCTCTACAGTGTTAAGAATCTTGATGGGGTTGTAGACATA
GTGAGAGTACGCTTGTGAAATCCAATGTGTAGGTTTCAGTCTTTCGCACC
CGGATCTGTGTGGCTTATTCAACGGCTTTTCCGATCGCTCGGCCCCCCGC
TCGCTCCGTGTACGCGAAACCTTGTGGGTTGAGAAACCATCGCGCATCGT
GTGTATCCCATCTGCCCTGCAGCTTTGCATCCTTCACCGATTACACCACC
TTCACATGTTTTTGTGCCTCCCCCAACAGCCGAAGCTGACCGTGTTGCTT
CAGCTTTGCAAGCTTCAACCATGACATCATCTTCACACGTATTCGCCCCC
TCCCCCCCCGAACAAACAGATCGTAGAAACTCATCGTGTACAACAACGAT
GCATGATTCGAACACCACTACATCGTCACACAACGTTTGTGCCCGCCCGC
CTCCCCCCCGCCACCAAAGACATCGTCGAAGCCGACCGCGTTCCTCCTAC
TTTCCATCCTTCGACCACCTCACCATCCTCACGCGCATTTTCGCCTCCCC
CTCCCAACAAACAGATCGTCCAAGCTGACCGTATACCCGGTGCCCGACAA
GCCGGTGTCTCTAGACGTGGTCCACTGGCGACGCATCCGTAGGAAGGAGA
CGAGGTGCTCCTACGGAAGGCCTCAGCCGAGAACGAACGTCCAGCGGTGC
TACGGCCCAGAATTGACGGAGCACTTGACCAGGAGGTGTGCACGCATGGT
ACCACACTGATTGCTGTACGTCCTGTTGTTGGTGGCGAACTTTTCTTTTG
TCGATTATTGGTGGACGCGGTGCACAAGTGACTTAAGAATAACACGCCTT
GCGTGTCTCGTCGTGCCGCGTATGCTGACCTTCCTTCAATTTTGTTCGCA
ACTTAACGTACGGTGTGCTTTTGATGACGGAAACTAGGGCTGTGCCGGTT
GACGGCGGAACCTATTGCCGGGCATTTACGGTCCGGCACAAATGTATTGT
TCATTCCCTACATGCAAGGAGCCCTTGTTAGGTTTGGCCTCTCGAGGTAA
CACTCCGGCAGTCGCCACAAGCCGCTTCACAACGAGAATAGGGACAAGGT
CGATGCAGCGATCACGAATATGGCTGGGTTCGATTTTTCAGCTAGGGCAT
GGTCACTCCACTGCATGCACCACGTGCTCTCTTTTTTTCTTCACCAGCCT
TGTGAAAGCTTAACTCGGCTTAATTCCAAGCCCATGCATGCGATACCCGC
CTCCCCCCCGATCCTCACAGCTACGTGTTGCGGGGATACCACCTGAGGGT
ACTCGTTGCCCACAACGCCGAAGTATGTCTGCGGGCCGGCCTCGAAGCTA
TGGCCCACACTTGGCGAATGCTCGGCATCCTTCTCTCCGGCGTGCCGGGC
GGGCTGCTACTTCCGCTTGGCTCGTCGGCGCCCGACGTAGACGTCGCCGG
GATCGACAAGGGGATGGCGGCGGCGGTGGCGACAGCTACCGCTGCCGCGG
GAGGGGGGAGCGGAGGGGGCGGGGCGGCCGGGGTGGAAGGCAGGAGTTGC
GTGGACCCCGCTTCCGCAGGCAGGGAAAGTGAGAGGGCGGGGAGGATGTT
TTGCGCTGTGGGGGGCGTTTGGTTCGTGTATTTGGCTGCGTGTGGATGTA
GGTGGCGGTAGCAAGTCAGAAGCGTGGGGGTACAGATCTTTGTGCTGGCT
GCTGTGGCATGATTAGCCCTGCGACGATGAGGTGTGGCCAAGGTTGCGCA
GGCGCTATTCGACTCGGTTCCGCTTGTTGTGGCGAAGTACCGGCGACGGG
GGCGGAGGCGGCGGAAGGCCGTAGACGACTTCGAACCACAAGCAACGGAT
ACGCTGTAGATCATCACCGCCTTTGCATGCAGCGCGACTGTCGGACACCC
TCTTTCCTTGTTCCCCTGGTCCCTCAGGAGATTTCAGTGTGCCAGAGGTG
CTCGACCTTATCGACCAGCACGAGGAGGAAGAAGAGGACAAGGCAGGGAA
GTCGAGCCTGGAGCGTCGGCTCACGCCGGAGCAGCGGCAGCAGCAGCTCA
ATCTCGCGCCGCCACCTCCGCGGCAGCCCGGCAGGCCGGCCACAACAGCT
CGCGGGTTAGTGGCAGCCGGAGGCGGCAGCGGTGACCTGAAACTCCCGCC
CAGGCGTCCCGCCGCCGCCGCCCACCCGACCGTGGCGATTGCTAGCACGA
CCAGCCCCGCGGCGGCGGCGACGACTTCCTCCGAATCGGTCAGCAGCAGC
AGCCGTCACGGGACCCGGAGCCAAAACAGCGCCACCTTCGGCGGCGGTGG
CGGACCTCCCATGTGGCAGCCTCTCCCGTCCCGCGGTCACCTGCCGCCTT
CGTCGGCGGGGGCGGCGGCGGTGGCGTACACGGCAACCACGGCGGATGAT
GAGGAAGACGACGGCGGTGGTGGGGACGGCGGCGACTCCGACGGATACAC
GACCGCCACGATAAGCTTTGCCGCCACGGAGTCGGTCTGGTGGGAGCACG
ACGACAGAGCAAACCGCGGCGGTGGGGGGCGGGTTTCGTCCCAGGCGGCC
GCCGCCGCCGCCCGCGCGGCGAGAGCCCGCGCAGGCGAAGGGGCGACGCG
GAATGGCGGCGGCGGCGGCGGAGGGGGCGTGACTGTCAGGGGTGCGAGGC
CCGACCGACAGGAGAGGTTGCGTGACGAGGTGGCCCTGGGGTGGCTTTGG
AAGTCGGAGGTTCGGGACTGGCTGTCGGCGATGTCCGAGGCCGGCTTCGC
GTACGACACACTGGCCGTCCTGGAGGTGGTAAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5894:629..3715+

>mRNA_Ecto-sp13_S_contig5894.16412.1 ID=mRNA_Ecto-sp13_S_contig5894.16412.1|Name=mRNA_Ecto-sp13_S_contig5894.16412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1443bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5894:629..3715+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGGAGCAGCAATACCGCAGTTGAGGCTTGGCGCTGGAATAGCGGC
GTCACCGCAACAGTTGGAAGACTCGGTTGCAGCACATGCACAGAGGAGAA
CGAGATCGTCCAAGCTGACCGTATACCCGGTGCCCGACAAGCCGGTGTCT
CTAGACGTGGTCCACTGGCGACGCATCCGTAGGAAGGAGACGAGGTGCTC
CTACGGAAGGCCTCAGCCGAGAACGAACGTCCAGCGGTGCTACGGCCCAG
AATTGACGGAGCACTTGACCAGGAGCTACGTGTTGCGGGGATACCACCTG
AGGGTACTCGTTGCCCACAACGCCGAAGTATGTCTGCGGGCCGGCCTCGA
AGCTATGGCCCACACTTGGCGAATGCTCGGCATCCTTCTCTCCGGCGTGC
CGGGCGGGCTGCTACTTCCGCTTGGCTCGTCGGCGCCCGACGTAGACGTC
GCCGGGATCGACAAGGGGATGGCGGCGGCGGTGGCGACAGCTACCGCTGC
CGCGGGAGGGGGGAGCGGAGGGGGCGGGGCGGCCGGGGTGGAAGGCAGGA
GTTGCGTGGACCCCGCTTCCGCAGGCAGGGAAAGAGATTTCAGTGTGCCA
GAGGTGCTCGACCTTATCGACCAGCACGAGGAGGAAGAAGAGGACAAGGC
AGGGAAGTCGAGCCTGGAGCGTCGGCTCACGCCGGAGCAGCGGCAGCAGC
AGCTCAATCTCGCGCCGCCACCTCCGCGGCAGCCCGGCAGGCCGGCCACA
ACAGCTCGCGGGTTAGTGGCAGCCGGAGGCGGCAGCGGTGACCTGAAACT
CCCGCCCAGGCGTCCCGCCGCCGCCGCCCACCCGACCGTGGCGATTGCTA
GCACGACCAGCCCCGCGGCGGCGGCGACGACTTCCTCCGAATCGGTCAGC
AGCAGCAGCCGTCACGGGACCCGGAGCCAAAACAGCGCCACCTTCGGCGG
CGGTGGCGGACCTCCCATGTGGCAGCCTCTCCCGTCCCGCGGTCACCTGC
CGCCTTCGTCGGCGGGGGCGGCGGCGGTGGCGTACACGGCAACCACGGCG
GATGATGAGGAAGACGACGGCGGTGGTGGGGACGGCGGCGACTCCGACGG
ATACACGACCGCCACGATAAGCTTTGCCGCCACGGAGTCGGTCTGGTGGG
AGCACGACGACAGAGCAAACCGCGGCGGTGGGGGGCGGGTTTCGTCCCAG
GCGGCCGCCGCCGCCGCCCGCGCGGCGAGAGCCCGCGCAGGCGAAGGGGC
GACGCGGAATGGCGGCGGCGGCGGCGGAGGGGGCGTGACTGTCAGGGGTG
CGAGGCCCGACCGACAGGAGAGGTTGCGTGACGAGGTGGCCCTGGGGTGG
CTTTGGAAGTCGGAGGTTCGGGACTGGCTGTCGGCGATGTCCGAGGCCGG
CTTCGCGTACGACACACTGGCCGTCCTGGAGGTGGTAAGGTAA
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