prot_Ecto-sp13_S_contig58927.16410.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig58927.16410.1
Unique Nameprot_Ecto-sp13_S_contig58927.16410.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length77
Homology
BLAST of mRNA_Ecto-sp13_S_contig58927.16410.1 vs. uniprot
Match: D7FWF1_ECTSI (tRNA pseudouridine synthase B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWF1_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 3.400e-39
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0
Query:    6 CVRGQVEREARQVRVDSLRQADPALPLPLLGLELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQ 72
            C+RGQVEREARQVRVDSLRQADPALPLPLLGLELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQ
Sbjct:   25 CIRGQVEREARQVRVDSLRQADPALPLPLLGLELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQ 91          
BLAST of mRNA_Ecto-sp13_S_contig58927.16410.1 vs. uniprot
Match: A0A6H5KMC7_9PHAE (tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMC7_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.390e-34
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0
Query:   11 VEREARQVRVDSLRQADPALPLPLLGLELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQ 72
            VEREARQVRVDSLRQADPALPLPLLGLELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQ
Sbjct:  108 VEREARQVRVDSLRQADPALPLPLLGLELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQ 169          
BLAST of mRNA_Ecto-sp13_S_contig58927.16410.1 vs. uniprot
Match: A0A8J2SXF4_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXF4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 7.900e-13
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 0
Query:   10 QVEREARQVRVDSLRQADPA--------LPLPLLGLELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQ 72
            +VEREARQV V  LR  D          L LP  GL++EC GG Y+RTLI+DL R  G+  HM  LERT+Q
Sbjct:  185 EVEREARQVSVSRLRMVDDRGVGSHEAPLSLPFFGLDVECSGGTYIRTLIDDLAREAGSCGHMVELERTRQ 255          
BLAST of mRNA_Ecto-sp13_S_contig58927.16410.1 vs. uniprot
Match: A0A835Z9D0_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.570e-12
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 0
Query:   11 VEREARQVRVDSLRQADPALPLPLLGLELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQ 72
            VER+AR V +  L      + LP   L ++C GG Y+RTLI D+ RALGTR HMT+L RTKQ
Sbjct:  176 VERDARPVTIYQLEAPAEGVALPSFALNVQCSGGTYIRTLIADIARALGTRGHMTSLVRTKQ 237          
BLAST of mRNA_Ecto-sp13_S_contig58927.16410.1 vs. uniprot
Match: A0A7S3PWL8_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWL8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.070e-10
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 0
Query:   11 VEREARQVRVDSLRQA---DPALPLPLLGLELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQ 72
            +E E R+V + SL      D    LP  GL++ECGGG Y+R+L+ D+G AL T A MT+LERTKQ
Sbjct:  259 IEIELREVSIHSLEYLSTDDNGKGLPCFGLDVECGGGTYIRSLVRDMGYALDTCATMTSLERTKQ 323          
BLAST of mRNA_Ecto-sp13_S_contig58927.16410.1 vs. uniprot
Match: A0A4W3IJ22_CALMI (tRNA pseudouridine(55) synthase n=6 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3IJ22_CALMI)

HSP 1 Score: 62.8 bits (151), Expect = 6.170e-10
Identity = 34/60 (56.67%), Postives = 40/60 (66.67%), Query Frame = 0
Query:   13 REARQVRVDSLRQADPALPLPLLGLELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQ 72
            R AR V V SL   D     PL  LE+ECGGGFYVR+L+ DLG+ L + AH+  LERTKQ
Sbjct:  119 RPARPVVVHSLSVQD--FSPPLFTLEIECGGGFYVRSLVSDLGKELSSCAHVKELERTKQ 176          
BLAST of mRNA_Ecto-sp13_S_contig58927.16410.1 vs. uniprot
Match: A0A3Q2CP24_CYPVA (tRNA pseudouridine(55) synthase n=1 Tax=Cyprinodon variegatus TaxID=28743 RepID=A0A3Q2CP24_CYPVA)

HSP 1 Score: 62.8 bits (151), Expect = 8.720e-10
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 0
Query:   10 QVE-REARQVRVDSLRQADPALPLPLLGLELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQ 72
            QVE + AR+V V SL+  D     PL  L++ECGGGFYVR+L++DLG+AL + AH+  L RTKQ
Sbjct:  166 QVEAKPARRVTVFSLKLQD--FQPPLFTLDIECGGGFYVRSLVDDLGKALSSCAHVKELIRTKQ 227          
BLAST of mRNA_Ecto-sp13_S_contig58927.16410.1 vs. uniprot
Match: A0A7K5NX61_CHRMC (tRNA pseudouridine(55) synthase (Fragment) n=8 Tax=Neognathae TaxID=8825 RepID=A0A7K5NX61_CHRMC)

HSP 1 Score: 60.8 bits (146), Expect = 1.410e-9
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 0
Query:    2 FATLCVRGQV--EREARQVRVDSL--RQADPALPLPLLGLELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQ 72
             +TL  RG+    + AR+VRV SL  +Q  P    PL  L++ECGGGFYVR+L+ D+G+ L T A M  L RTKQ
Sbjct:   65 LSTLMKRGEAVEAKPARRVRVYSLSLQQFQP----PLFTLDVECGGGFYVRSLVSDIGKELSTCATMQELTRTKQ 135          
BLAST of mRNA_Ecto-sp13_S_contig58927.16410.1 vs. uniprot
Match: A0A851DLT9_TODME (tRNA pseudouridine(55) synthase (Fragment) n=5 Tax=Neognathae TaxID=8825 RepID=A0A851DLT9_TODME)

HSP 1 Score: 60.1 bits (144), Expect = 1.790e-9
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 0
Query:    2 FATLCVRGQV--EREARQVRVDSL--RQADPALPLPLLGLELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQ 72
             +TL  RG+    + AR VRV SL  +Q  P    PL  L++ECGGGFYVR+L+ D+G+ L T A M  L RTKQ
Sbjct:   38 LSTLMKRGEAVEAKPARPVRVYSLSLQQFQP----PLFTLDVECGGGFYVRSLVSDIGKELSTCAMMQELTRTKQ 108          
BLAST of mRNA_Ecto-sp13_S_contig58927.16410.1 vs. uniprot
Match: UPI00198CCE54 (probable tRNA pseudouridine synthase 1 n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI00198CCE54)

HSP 1 Score: 61.6 bits (148), Expect = 2.080e-9
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 0
Query:   13 REARQVRVDSLRQADPALPLPLLGLELECGGGFYVRTLIEDLGRALGTRAHMTALERTKQ 72
            + AR V V SL   D     PL  LE+ECGGGFYVR+L++DLG+AL + AH+  L RTKQ
Sbjct:  170 KPARPVTVYSLSLQD--FNPPLFTLEIECGGGFYVRSLVDDLGKALSSCAHVQELTRTKQ 227          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58927.16410.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWF1_ECTSI3.400e-3998.51tRNA pseudouridine synthase B n=1 Tax=Ectocarpus s... [more]
A0A6H5KMC7_9PHAE2.390e-34100.00tRNA pseudouridine(55) synthase n=1 Tax=Ectocarpus... [more]
A0A8J2SXF4_9STRA7.900e-1352.11tRNA pseudouridine(55) synthase n=1 Tax=Pelagomona... [more]
A0A835Z9D0_9STRA3.570e-1253.23tRNA pseudouridine(55) synthase n=1 Tax=Tribonema ... [more]
A0A7S3PWL8_9STRA5.070e-1050.77tRNA pseudouridine(55) synthase n=1 Tax=Chaetocero... [more]
A0A4W3IJ22_CALMI6.170e-1056.67tRNA pseudouridine(55) synthase n=6 Tax=Callorhinc... [more]
A0A3Q2CP24_CYPVA8.720e-1054.69tRNA pseudouridine(55) synthase n=1 Tax=Cyprinodon... [more]
A0A7K5NX61_CHRMC1.410e-949.33tRNA pseudouridine(55) synthase (Fragment) n=8 Tax... [more]
A0A851DLT9_TODME1.790e-949.33tRNA pseudouridine(55) synthase (Fragment) n=5 Tax... [more]
UPI00198CCE542.080e-955.00probable tRNA pseudouridine synthase 1 n=1 Tax=Sil... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2350.10coord: 4..75
e-value: 1.1E-15
score: 59.5
IPR032819tRNA pseudouridylate synthase B, C-terminalPFAMPF16198TruB_C_2coord: 48..71
e-value: 4.5E-8
score: 33.1
IPR014780tRNA pseudouridine synthase II, TruBPANTHERPTHR13767TRNA-PSEUDOURIDINE SYNTHASEcoord: 10..72
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 10..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58927contigEcto-sp13_S_contig58927:224..454 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58927.16410.1mRNA_Ecto-sp13_S_contig58927.16410.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig58927 224..454 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig58927.16410.1 ID=prot_Ecto-sp13_S_contig58927.16410.1|Name=mRNA_Ecto-sp13_S_contig58927.16410.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
MFATLCVRGQVEREARQVRVDSLRQADPALPLPLLGLELECGGGFYVRTL
IEDLGRALGTRAHMTALERTKQVSRA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032819TruB_C
IPR014780tRNA_psdUridine_synth_TruB
IPR020103PsdUridine_synth_cat_dom_sf