mRNA_Ecto-sp13_S_contig11927.1641.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11927.1641.1
Unique NamemRNA_Ecto-sp13_S_contig11927.1641.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11927.1641.1 vs. uniprot
Match: D8LIS5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIS5_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 2.860e-34
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 TLAQIRGLEKPPEPTLTPGEWRAVEAKALARGDEAAPCPICRESFRGESQVILSCSHVFHK 183
            TLAQIRGLE+PPEPTLTPGEWRAVEAKALARGDEAAPCPICRESFRGESQVILSCSHVFHK
Sbjct:  184 TLAQIRGLEEPPEPTLTPGEWRAVEAKALARGDEAAPCPICRESFRGESQVILSCSHVFHK 244
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BLAST of mRNA_Ecto-sp13_S_contig11927.1641.1 vs. uniprot
Match: A0A7S0UVK5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0UVK5_9CHLO)

HSP 1 Score: 84.7 bits (208), Expect = 1.090e-17
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 TLAQIRGLEKPPEPTLTPGEWRAVEAKALARGDEAAPCPICRESFRGESQVILSCSHVFHK 183
            TLAQ  GL   P P L+  EW+AV+A++ AR D ++ CPICRE F+GESQV+LSCSH FHK
Sbjct:  259 TLAQYLGLFPLPPPALSDSEWQAVQARSRARDDSSSCCPICREEFKGESQVLLSCSHTFHK 319
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BLAST of mRNA_Ecto-sp13_S_contig11927.1641.1 vs. uniprot
Match: A0A6P6E8T5_OCTDE (RING finger protein 32 n=1 Tax=Octodon degus TaxID=10160 RepID=A0A6P6E8T5_OCTDE)

HSP 1 Score: 83.2 bits (204), Expect = 2.360e-17
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 TLAQIRGLEKPPEPTLTPGEWRAVEAKALARGDEAAPCPICRESFRGESQVILSCSHVFHK 183
            TLAQ  GL  PP P L+P EW  V+ +++ +GD A PCPIC+E FR   QV+LSCSHVFH+
Sbjct:  100 TLAQKLGLFAPPPPPLSPAEWERVKQRSVLQGDSAQPCPICKEDFRLHPQVLLSCSHVFHR 160
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BLAST of mRNA_Ecto-sp13_S_contig11927.1641.1 vs. uniprot
Match: A0A5C6NTT0_9TELE (RING finger protein 32 n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6NTT0_9TELE)

HSP 1 Score: 81.3 bits (199), Expect = 7.180e-17
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 TLAQIRGLEKPPEPTLTPGEWRAVEAKALARGDEAAPCPICRESFRGESQVILSCSHVFHKT 186
            TLAQ  GL   P P LT GEWR V+A+++ +G+   PC ICRE F  + QV+LSCSHVFHKT
Sbjct:   92 TLAQKLGLVASPAPGLTEGEWRQVKARSIQQGESGQPCAICREEFLLQPQVLLSCSHVFHKT 153
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BLAST of mRNA_Ecto-sp13_S_contig11927.1641.1 vs. uniprot
Match: H2TPT8_TAKRU (Ring finger protein 32 n=6 Tax=Takifugu TaxID=31032 RepID=H2TPT8_TAKRU)

HSP 1 Score: 81.3 bits (199), Expect = 9.710e-17
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 TLAQIRGLEKPPEPTLTPGEWRAVEAKALARGDEAAPCPICRESFRGESQVILSCSHVFHKT 186
            TLAQ  GL   P P LT GEWR V+A+++ +G+   PC ICRE F  + QV+LSCSHVFHKT
Sbjct:   84 TLAQKLGLVASPAPGLTEGEWRQVKARSIQQGESGQPCAICREEFLLQPQVLLSCSHVFHKT 145
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BLAST of mRNA_Ecto-sp13_S_contig11927.1641.1 vs. uniprot
Match: A0A0P6JX07_HETGA (RING finger protein 32 n=5 Tax=Bathyergidae TaxID=10167 RepID=A0A0P6JX07_HETGA)

HSP 1 Score: 79.7 bits (195), Expect = 4.160e-16
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 TLAQIRGLEKPPEPTLTPGEWRAVEAKALARGDEAAPCPICRESFRGESQVILSCSHVFHK 183
            TLAQ  GL  PP P L+P EW  V+ +++  GD   PCPIC+E F+   QV+LSCSHVFH+
Sbjct:   92 TLAQKLGLFAPPPPPLSPAEWERVKQRSVLHGDSELPCPICKEDFKLHPQVLLSCSHVFHR 152
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BLAST of mRNA_Ecto-sp13_S_contig11927.1641.1 vs. uniprot
Match: UPI00187707EF (RING finger protein 32 isoform X3 n=2 Tax=Manis TaxID=9973 RepID=UPI00187707EF)

HSP 1 Score: 77.8 bits (190), Expect = 8.500e-16
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 TLAQIRGLEKPPEPTLTPGEWRAVEAKALARGDEAAPCPICRESFRGESQVILSCSHVFHK 183
            TLAQ  GL +PP   L+  EW  V+ ++L +GD A PCPIC+E F   SQV+LSCSHVFH+
Sbjct:   91 TLAQKLGLFEPPPLPLSSDEWEKVKQRSLQQGDSAQPCPICKEEFELRSQVLLSCSHVFHR 151
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BLAST of mRNA_Ecto-sp13_S_contig11927.1641.1 vs. uniprot
Match: UPI000C7EBD66 (RING finger protein 32 isoform X2 n=1 Tax=Otolemur garnettii TaxID=30611 RepID=UPI000C7EBD66)

HSP 1 Score: 76.6 bits (187), Expect = 9.510e-16
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 TLAQIRGLEKPPEPTLTPGEWRAVEAKALARGDEAAPCPICRESFRGESQVILSCSHVFHK 183
            TLAQ  GL +PP   L+  EW  V+ +++ +GD   PCPIC+E FR   QV+LSCSHVFHK
Sbjct:   89 TLAQKLGLVEPPPLPLSSDEWEKVKQRSILQGDSMQPCPICKEEFRLHPQVLLSCSHVFHK 149
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BLAST of mRNA_Ecto-sp13_S_contig11927.1641.1 vs. uniprot
Match: UPI0018772E2D (RING finger protein 32 isoform X2 n=2 Tax=Manis TaxID=9973 RepID=UPI0018772E2D)

HSP 1 Score: 77.8 bits (190), Expect = 1.070e-15
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 TLAQIRGLEKPPEPTLTPGEWRAVEAKALARGDEAAPCPICRESFRGESQVILSCSHVFHK 183
            TLAQ  GL +PP   L+  EW  V+ ++L +GD A PCPIC+E F   SQV+LSCSHVFH+
Sbjct:   91 TLAQKLGLFEPPPLPLSSDEWEKVKQRSLQQGDSAQPCPICKEEFELRSQVLLSCSHVFHR 151
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BLAST of mRNA_Ecto-sp13_S_contig11927.1641.1 vs. uniprot
Match: UPI001FD11EEA (RING finger protein 32-like isoform X2 n=1 Tax=Lutra lutra TaxID=9657 RepID=UPI001FD11EEA)

HSP 1 Score: 78.2 bits (191), Expect = 1.080e-15
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 TLAQIRGLEKPPEPTLTPGEWRAVEAKALARGDEAAPCPICRESFRGESQVILSCSHVFHK 183
            TLAQ  GL +PP P L+  EW  V+ +++  GD A PCP+C+E F    QV+LSCSHVFH+
Sbjct:   92 TLAQKLGLFEPPPPLLSSDEWEKVKQRSILHGDSAQPCPVCKEEFELRPQVLLSCSHVFHR 152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11927.1641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIS5_ECTSI2.860e-3498.36RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S0UVK5_9CHLO1.090e-1760.66Hypothetical protein (Fragment) n=1 Tax=Polytomell... [more]
A0A6P6E8T5_OCTDE2.360e-1757.38RING finger protein 32 n=1 Tax=Octodon degus TaxID... [more]
A0A5C6NTT0_9TELE7.180e-1758.06RING finger protein 32 n=1 Tax=Takifugu flavidus T... [more]
H2TPT8_TAKRU9.710e-1758.06Ring finger protein 32 n=6 Tax=Takifugu TaxID=3103... [more]
A0A0P6JX07_HETGA4.160e-1654.10RING finger protein 32 n=5 Tax=Bathyergidae TaxID=... [more]
UPI00187707EF8.500e-1655.74RING finger protein 32 isoform X3 n=2 Tax=Manis Ta... [more]
UPI000C7EBD669.510e-1654.10RING finger protein 32 isoform X2 n=1 Tax=Otolemur... [more]
UPI0018772E2D1.070e-1555.74RING finger protein 32 isoform X2 n=2 Tax=Manis Ta... [more]
UPI001FD11EEA1.080e-1552.46RING finger protein 32-like isoform X2 n=1 Tax=Lut... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11927contigEcto-sp13_S_contig11927:363..910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score128.3
Seed ortholog evalue1.3e-27
Seed eggNOG ortholog2880.D8LIS5
Model size189
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
Cds size189
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462631.0754504-CDS-Ecto-sp13_S_contig11927:362..4861681462631.0754504-CDS-Ecto-sp13_S_contig11927:362..486Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11927 363..486 -
1681462631.084924-CDS-Ecto-sp13_S_contig11927:845..9101681462631.084924-CDS-Ecto-sp13_S_contig11927:845..910Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11927 846..910 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11927.1641.1prot_Ecto-sp13_S_contig11927.1641.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11927 363..910 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11927.1641.1

>prot_Ecto-sp13_S_contig11927.1641.1 ID=prot_Ecto-sp13_S_contig11927.1641.1|Name=mRNA_Ecto-sp13_S_contig11927.1641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
TLAQIRGLEKPPEPTLTPGEWRAVEAKALARGDEAAPCPICRESFRGESQ
VILSCSHVFHKT*
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mRNA from alignment at Ecto-sp13_S_contig11927:363..910-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11927.1641.1 ID=mRNA_Ecto-sp13_S_contig11927.1641.1|Name=mRNA_Ecto-sp13_S_contig11927.1641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=548bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11927:363..910- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGTTGGCACAGATCCGGGGGCTGGAAAAACCACCCGAGCCCACGCTTAC
TCCTGGAGAGTGGAGGTGCGACGGCGGTCGTCCTCAAGTTCTGTGTACAA
GTTGAACATTCGGTTGTCGCGCATTTTTCCCTGTCGGTCGTTGTGACACC
CGAAGTGCTCTCGCGGGGCAGAAGACGACCGACTGAACGTTTTTGCGACT
ATGAGCTCTCCAACGCGTTAGTGTCTCCGTTCTTCTCGTCACCGACCCTC
CTACCCCCCCTCGCCCCCACGACGCAGTTTCAGCGCATTGAATCCCGCGT
GATTGTGTAGAGGAGTGAGGGAGTCTCTCACGAGTCCCAGTGTCACCTTT
GCACGAGGCCGAACTCGTTGTTGCACGGTCTGCGATTAACCGCGCGCGTT
CCCTGTGCCCTTCCCCCTGGCCAGAGCCGTGGAAGCCAAGGCCCTGGCAA
GGGGAGACGAGGCGGCGCCGTGCCCCATCTGCCGGGAGTCGTTTCGAGGA
GAGAGCCAGGTCATCCTCAGCTGCAGCCATGTGTTTCACAAGACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11927:363..910-

>mRNA_Ecto-sp13_S_contig11927.1641.1 ID=mRNA_Ecto-sp13_S_contig11927.1641.1|Name=mRNA_Ecto-sp13_S_contig11927.1641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11927:363..910- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGTTGGCACAGATCCGGGGGCTGGAAAAACCACCCGAGCCCACGCTTAC
TCCTGGAGAGTGGAGAGCCGTGGAAGCCAAGGCCCTGGCAAGGGGAGACG
AGGCGGCGCCGTGCCCCATCTGCCGGGAGTCGTTTCGAGGAGAGAGCCAG
GTCATCCTCAGCTGCAGCCATGTGTTTCACAAGACGTGA
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