mRNA_Ecto-sp13_S_contig5889.16402.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5889.16402.1 vs. uniprot
Match: D8LHF9_ECTSI (Neurofilament triplet L protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF9_ECTSI) HSP 1 Score: 943 bits (2437), Expect = 0.000e+0 Identity = 560/620 (90.32%), Postives = 561/620 (90.48%), Query Frame = 1
Query: 604 MLATSDGVSFVAHNNGEQTSGGTVGTYKGRKFVPTKDKPAVAAAGKSKIPKNVNLEDLHQAMEDDSTAVDVLKREVLMAQESEAKESFGQLEMLQRTHDKLRSRADRLEAVHDGLFNKLEVVKKTLLVKKVGTEPERQLVRLQAELRATDKRHQDAMITKETTEFIVKRITKEVVDVKQAVRTTQTQLTATLSEAASSESHLQQSRQELKTEEERLEKLRKKVVNQRMMLQSESIAGLQQVMEERSVQLFNQEERIHQRDDLLTKSGGAMRSDEEERLARTIVVRNVYSSILQRKVEDEQRHLGALEDSFQQIKNTTGLAGVDDIIERYQMRAGKNQQLHLMAEEIRQRIESLRKENHQQRQWRDDLHRRQEATSGNRDMYQEVDLIDIALGSARKQCDDAKERANRLSVTVDRLRDALSRFMSKVDSKTHPVAPQSKMPEVFAQLDSKINHMMKAVSAALVKDDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSSKDVFSKLDNASVTKILYANIMSTEPDTSPRNVRVTPTKSGDAGIEKRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDRTTVKKLANLVLGRDTKTRGTRRRRLRRKDG 2463
MLATSDGVSFVAHNNGEQTSGGTVGTYKGRKFVPTKDKPAVAAA KSKIPKNVNLEDLHQAMEDDSTAVDVLKREVLMAQESEAKESFGQLEMLQRTHDKLRSRADRLEAVHDGLFNKLEVVKKTLLVKKVGTEPERQL RLQ ELRATDKRHQDAMITKETTEFIVKRITK VNQRMMLQSES+AGLQQVMEERSVQLFNQEERIHQRDDLLTKSGGAMRSDEEERLARTIVVRNVYSSILQRKVEDEQRHLGALEDSFQQIKNTTGLAGVDDIIERYQMRAGKNQQLHLMAEEIRQRIESLRKENHQQRQWRDDLHRRQEATSGNRDMYQEVDLIDIALGSARKQCDDAKERANRLSVTVDRLRDALSRFMSKVDSKTHPVAPQSKMPEVFAQLDSKI HMMKAVSAALVKDDRG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PSSSKDVFSKLDNASVTKILYANIMSTEPDTSPRNVRVTPTKSGDAGIEKRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDRTTVKKLANLVLGRDTKTRGTRRRRLRRKDG
Sbjct: 1 MLATSDGVSFVAHNNGEQTSGGTVGTYKGRKFVPTKDKPAVAAAEKSKIPKNVNLEDLHQAMEDDSTAVDVLKREVLMAQESEAKESFGQLEMLQRTHDKLRSRADRLEAVHDGLFNKLEVVKKTLLVKKVGTEPERQLARLQVELRATDKRHQDAMITKETTEFIVKRITK---------------------------------------------------VNQRMMLQSESLAGLQQVMEERSVQLFNQEERIHQRDDLLTKSGGAMRSDEEERLARTIVVRNVYSSILQRKVEDEQRHLGALEDSFQQIKNTTGLAGVDDIIERYQMRAGKNQQLHLMAEEIRQRIESLRKENHQQRQWRDDLHRRQEATSGNRDMYQEVDLIDIALGSARKQCDDAKERANRLSVTVDRLRDALSRFMSKVDSKTHPVAPQSKMPEVFAQLDSKITHMMKAVSAALVKDDRGGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSSSKDVFSKLDNASVTKILYANIMSTEPDTSPRNVRVTPTKSGDAGIEKRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDRTTVKKLANLVLGRDTKTRGTRRRRLRRKDG 569
BLAST of mRNA_Ecto-sp13_S_contig5889.16402.1 vs. uniprot
Match: A0A7S3YI09_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YI09_HETAK) HSP 1 Score: 268 bits (684), Expect = 2.960e-77 Identity = 184/442 (41.63%), Postives = 272/442 (61.54%), Query Frame = 1
Query: 649 GEQTSGGTVGTYKGRKFVPTKD--KPAVAAA---GKSKIPKNVNLEDLHQAMEDDSTAVDVLKREVLMAQESEAKESFGQLEMLQRTHDKLRSRADRLEAVHDGLFNKLEVVKKTLLVKKVGTEPERQLVRL-----QAELRATDKRHQDAMITKETTEFIVKRITKEVVDVKQAVRTTQTQLTATLSEAASSESHLQQSRQELKTEEERLEKLRKKVVNQRMMLQSESIAGLQQVMEERSVQLFNQEERIHQRDDLLTKSGGAMRSDEEERLARTIVVRNVYSSILQRKVEDEQRHLGALEDSFQQIKNTTGLAGVDDIIERYQMRAGKNQQLHLMAEEIRQRIESLRKENHQQRQWRDDLHRRQEATSGNRDMYQEVDLIDIALGSARKQCDDAKERANRLSVTVDRLRDALSRFMSKVDSKTHPVAPQSKMPEVFAQLD 1944
G SG GTY RKFV K K A A G +K+ K+VNL+ + A+ +D+T V+V++REVL +Q+ E ++ +L L+RTHD+L+ + + L +L +++ + P L +A+++ +R + A++ K++ +++R+T+E++ +K++ +T Q ++ +E ASS H Q ++QEL EE RL LR KV + R Q E + GL+++MEERSV L QEERI +RD+++ +S GAM DEEERL R VVRNVYS++L+ +V + + L LE +FQQIKN TGL+ VD I+ ++ RA KN+QL +AEE+R RIE L+ N Q +Q DL E ++GNR++YQEVDLID AL SARK C++AK +ANRL VT+D LRDAL RF+ KVDS A + P D
Sbjct: 20 GAAPSGQGRGTYSRRKFVAPKGGGKSATGGAXXXGAAKV-KHVNLDAVDDALNEDATTVEVMRREVLDSQKMELAQARAELAQLRRTHDRLKDETHAKQKLAKELARQLAELRRMANPENFRQAPGETRTALTVDQIEAQVQENHRRVRAALVQKQSLGHMLRRLTQEILAIKKSTKTLQQRMRTVDNELASSTLHYQHAKQELTNEERRLAGLRSKV-DARRRQQDERMQGLEKIMEERSVILERQEERIKKRDEIIARSAGAMLEDEEERLKRAYVVRNVYSTVLEERVGEHREALAKLELTFQQIKNVTGLSDVDAIVAKFLGRAAKNEQLEALAEEVRGRIEGLKAGNLQLKQQLADLASAAEVSAGNREVYQEVDLIDEALASARKHCEEAKSKANRLHVTLDSLRDALVRFVRKVDSLPAVAAAGAAAPGTATHAD 459
BLAST of mRNA_Ecto-sp13_S_contig5889.16402.1 vs. uniprot
Match: F0Y554_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y554_AURAN) HSP 1 Score: 262 bits (669), Expect = 1.710e-70 Identity = 210/626 (33.55%), Postives = 337/626 (53.83%), Query Frame = 1
Query: 643 NNGEQTSGGTVGTYKGRKFVPTKDKPAVAAAGKSKIPKNVNLEDLHQAMEDDSTAVDVLKREVLMAQESEAKESFGQLEMLQRTHDKLRSRADRLEAVHDGLFNKLEVVKKTLLVKKVG-TEPERQLVRLQAELRATDKRHQDAMITKETTEFIVKRITKEVVDVKQAVRTTQTQLTATLSEAASSESHLQQSRQELKTEEERLEKLRKKVVNQRMMLQSESIAGLQQVMEERSVQLFNQEERIHQRDDLLTKSGGAMRSDEEERLARTIVVRNVYSSILQRKVEDEQRHLGALEDSFQQIKNTTGLAGVDDIIERYQMRAGKNQQLHLMAEEIRQRIESLRKENHQQRQWRDDLHRRQEATSGNRDMYQEVDLIDIALGSARKQCDDAKERANRLSVTVDRLRDALSRFMSKVDSKTHPVAPQSKMPEVFAQLDSKINHMMKAVSAALVKDDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSSKDV-FSKLDNASVTKILYANIMSTEPDTSPRNVRVTPTKSGDAGIEKRIKMKILLGPEYVSDEEEPDSEE--------------------ESEG--------EQEDARDTFVDRTTVKKLANLVLGRDTKTRG 2430
+ GE +SG TY+ RKFV +K KP G S++ K+V L + QA+EDDSTAV+ LKR+V Q E + S L LQ+T+DKLRS AD E +L + + + T P + + +L+ E+ +K +DA++ K+ ++KR++ +++ V+Q+ + QL E A+ LQ ++QE K EE +L KL K+V ++R M + E RS + QEER+ R+ ++ +S + + EE+RL R V+R VYSS+L++K+ E+ LGALE +FQ+IK TGL+ VD+I+++++ R K QLH +AE++R+RI++LR+EN + ++ ++ EA +GNR++YQE+D + LG A +QC++AK+R R VT+++L+ A++RF SK++ K P ++PE +LDSK+ MKAVS AL +D P S + F KL + + K+LY +M T PD PRNVRV + +E+ + K++ G + E D E E EG ++++ R+ VDR TVK+L+NL++ R+ +G
Sbjct: 483 DGGESSSG----TYQRRKFV-SKGKP-----GASRL-KHVKLSTVQQALEDDSTAVETLKRDVADFQHLELETSRRYLVSLQKTYDKLRSEADAREGQQKAYQEELVTLDRLCTEARTKQTHPNQAVAQLKHEIEREEKDVKDALVQKDVFTHMIKRLSDDMLAVRQSGFGIKEQLATVEREIAACTLQLQSAKQESKHEEVKLAKLEKQVKSRRKMXXXXXXXXXXXIAE-RSSLVEKQEERMRMREAVMARSKFDLGAQEEQRLKRMHVIRKVYSSMLEKKITAEEESLGALETTFQKIKIVTGLSDVDEIVQKFKDRTHKTHQLHQLAEDVRERIDTLREENSRLKEQLLNMRSNNEAIAGNREIYQEMDTFNKGLGKALRQCEEAKDRKVRSKVTLEQLKLAVARFRSKIEGKFFPTPSNEQLPEYLRELDSKLTVKMKAVSEALALEDTNGSVSPSGQGPQGTYGAAAVGGEAGLK--------PGSEVLLPFGKLQSEKLQKMLYHKLMLTNPDQGPRNVRVR-ARPCLQDLERYTQRKLMTGGLEDRFDLEDDVSEFAYPTQGGXXXXXXXAAAVGEDEGLEGVAAASKEDELREPVVDRDTVKRLSNLIITRENPKKG 1087
BLAST of mRNA_Ecto-sp13_S_contig5889.16402.1 vs. uniprot
Match: A0A6H5KWI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI0_9PHAE) HSP 1 Score: 227 bits (579), Expect = 8.780e-66 Identity = 155/171 (90.64%), Postives = 157/171 (91.81%), Query Frame = 1
Query: 1870 MSKVDSKTHPVAPQSKMPEVFAQLDSKINHMMKAVSAALVKDDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSSKDVFSKLDNASVTKILYANIMSTEPDTSPRNVRVTPTKSGDAGIEKRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDRTTV 2382
MS+VDSKTHPVAPQSKMPEVFAQLDSKI HMMKAVSAALVKDDRG XXXXXXXXXXXXXXXXXXXXXXXXXXX PS SKDV LDNASVTKILYANIMS EPDTSPRNVRVTPTKSGDAGI+KRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDRTT
Sbjct: 1 MSQVDSKTHPVAPQSKMPEVFAQLDSKITHMMKAVSAALVKDDRGGSGSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSPSKDV---LDNASVTKILYANIMSAEPDTSPRNVRVTPTKSGDAGIDKRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDRTTA 168
BLAST of mRNA_Ecto-sp13_S_contig5889.16402.1 vs. uniprot
Match: A0A7S2V2J9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2J9_9STRA) HSP 1 Score: 158 bits (399), Expect = 3.720e-37 Identity = 141/524 (26.91%), Postives = 249/524 (47.52%), Query Frame = 1
Query: 1066 DAMITKETTEFIVKRITKEVVDVKQAVRTTQTQLTATLSEAASSESHLQQSRQELKTEEERLEKLRKKVVNQRMMLQSESIAGLQQVMEERSVQLFNQEERIHQRDDLLTK--------------------------------------------------SGGAMR---SDEEERLARTIVVRNVYSSILQRKVEDEQRHLGALEDSFQQIKNTTGLAGVDDIIERYQMRAGKNQQLHLMAEEIRQRIESLRKENHQQRQWRDDLHRRQEATSG-NRDMYQEVDLIDIALGSARKQCDDAKERANRLSVTVDRLRDALSRFMSKVDSKTHPVAPQSKMPEVFAQLDSKINHMMKAVSAALVKDDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSSKDV-FSKLDNASVTKILYANIMSTEPDTSPRNVRVTPTKSGDAGIEKRI-------------KMKILLGPEYVSDEEEPDSEEESEGEQEDA------RDTFVDRTTVKKLANLVLGRD 2415
D M+ K+ + +++R+T+E++++K+ R ++ ++ ASS H Q ++QELK E+ +L LR++V +QR Q ++G+ Q++++R L QEER+ + + + S GA R S + LA T + +++ +Q+ L LE + QQ+K TGL V IIE++ R + ++L M E+I++R +L++ N +Q D+ E++ G NR++YQE DL+D L ARK+ + K+RA++L V++D LR++L+RF++KVD+ P + + QLD I+ +MKAV+A L+ SSKD+ SKL+N +V ++LY +M+ EPD + +NVR P A + + ++ + + +DE E DS+ +EG Q++A R+ +DR VKK++ +++ RD
Sbjct: 40 DLMVEKQKLQLMLRRLTREILELKKHTRQLGEEMRTVDNDVASSTLHFQHAKQELKNEDRKLMGLRRRVESQRAQ-QEVRMSGVHQLVDQRQALLAMQEERLQMKSSAIAQDNELETLVDRLEDPSGRIPSPSMEGVGSPKRLALGVALAVRAGTSQSNRPSRGASRNATSSKNNALASTTMAHVASGRFSSKRLAQDQQRLAMLEQTLQQLKFITGLDDVPGIIEKFNNRTTRLEELSQMTEDIQKRSTALKQSNTSLQQQLADVTAAVESSEGHNREVYQEADLVDEKLAQARKRFQEVKDRAHKLDVSLDSLRESLARFVNKVDAHGKKRKPNESLSMLVNQLDGHISQVMKAVNADLMNT------ASPKSSRRGNDANTYDPSATGDKPVGLGGTKTDSSKDLHLSKLENTNVKRLLYQRLMAAEPDVTEQNVRTRPKPKHPAAARRMLGYFSDEDSEEEDSQINVQI---QSADESEEDSDMLAEGAQQNADKEDETREPTMDRDLVKKVSMMIINRD 553
BLAST of mRNA_Ecto-sp13_S_contig5889.16402.1 vs. uniprot
Match: A0A7S3YHZ7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YHZ7_HETAK) HSP 1 Score: 97.4 bits (241), Expect = 6.480e-20 Identity = 58/111 (52.25%), Postives = 72/111 (64.86%), Query Frame = 1
Query: 1612 QQLHLMAEEIRQRIESLRKENHQQRQWRDDLHRRQEATSGNRDMYQEVDLIDIALGSARKQCDDAKERANRLSVTVDRLRDALSRFMSKVDSKTHPVAPQSKMPEVFAQLD 1944
QQL +AEE+R RIE L+ N Q +Q DL E ++GNR++YQEVDLID AL SARK C++AK +ANRL VT+D LRDAL RF+ KVDS A + P D
Sbjct: 20 QQLEALAEEVRGRIEGLKAGNLQLKQQLADLASAAEVSAGNREVYQEVDLIDEALASARKHCEEAKSKANRLHVTLDSLRDALVRFVRKVDSLPAVAAAGAAAPGTATHAD 130
BLAST of mRNA_Ecto-sp13_S_contig5889.16402.1 vs. uniprot
Match: A0A812S5L8_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S5L8_SYMMI) HSP 1 Score: 81.3 bits (199), Expect = 2.450e-12 Identity = 118/460 (25.65%), Postives = 224/460 (48.70%), Query Frame = 1
Query: 676 GTYKGRKFVP-TKDKPAVAAAGKSKIPK--NVNLEDLHQAMEDDSTAVDVLKREVLMAQESEAKESFGQLEMLQRTHDKLRSRADRLEAVHDGLFNKLEVVKKTLLVKKVGTEPERQLV-RLQAELRATDKRHQDAMITKETTEFIVKRITKEVVDVK---QAVRTTQTQLTATLSEAASSESHLQQSRQELKTEEERLEKLRK-----------KVVNQRMMLQS--ESIAGLQQVMEERSVQLFNQEERIHQRDDLLTKSGGAMRSDEEERLARTIVVRNVYSSILQRKVEDEQRHLGALEDSFQQIKNTTGLAGVDDIIERYQMRAGKNQQLHLMAEEIRQRIESLRKENHQQRQWRDDLHRRQEATSGNRDMYQEVDLIDIALGSARKQCDDAKERANRLSVTVDRLRDALSRFMSKVDSKTHPVAPQSKMPEVFAQLDSKINHMMKAVSAALVKD 1995
GTYKGRKFV T A G SK + NV++ DL + +E+D+ A+ +++++ AQ +E ++ L +++ +D L + + + L +K +++ + ++ G E ++ + +LR ++ + TK F+ R+ E+++ K ++ T TQL A E ES L+ SR EL +EE +E L K K+ ++M+Q +SIA ++ MEE E + +D + + A+ ++R ++ V N SS A++ S QQI ++IERY + + ++L+ + +E++ ++ + R + + Q + ++ + + NR +YQEV++ D AL +ARK+ DD +ER RL +++ LR A+ RF+ KV+ + P P Q +N +++ + ++KD
Sbjct: 39 GTYKGRKFVEVTHSASADLDVGGSKRNRKPNVDVNDLDKLLENDAAALQNMRKDIKNAQTAEMDKARANLSAIRKEYDTLCTFNAKHASKIAELRDKKMILEGLVEAQQQGREKYIGIIDAISEDLREVEENTEAEERTKNMMAFMRNRLDSEIMECKIKSHSLTATCTQLRA---EFNGLESTLRLSRLELSSEERHMESLLKTAKSRSEQGQAKMHELQVMVQEGEDSIARVKMSMEEVL------ENSLGLQDTSVPDTQAAVNMT-KDRAIKSSPVSNCPSST----------EGAAIDLSGQQIS---------EVIERYTTQQSRIERLNQVQKELKGQLNAQRAKKVKMEQLLEKSQQKLQLLASNRQVYQEVEMKDAALSTARKEGDDCREREYRLRKSIEGLRRAVPRFLQKVNKD---LIPDGGGPVTVDQ----VNKLIRQIGERMLKD 462 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5889.16402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5889.16402.1 >prot_Ecto-sp13_S_contig5889.16402.1 ID=prot_Ecto-sp13_S_contig5889.16402.1|Name=mRNA_Ecto-sp13_S_contig5889.16402.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=621bp MLATSDGVSFVAHNNGEQTSGGTVGTYKGRKFVPTKDKPAVAAAGKSKIPback to top mRNA from alignment at Ecto-sp13_S_contig5889:149..8440+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5889.16402.1 ID=mRNA_Ecto-sp13_S_contig5889.16402.1|Name=mRNA_Ecto-sp13_S_contig5889.16402.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8292bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5889:149..8440+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5889:149..8440+ >mRNA_Ecto-sp13_S_contig5889.16402.1 ID=mRNA_Ecto-sp13_S_contig5889.16402.1|Name=mRNA_Ecto-sp13_S_contig5889.16402.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1863bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5889:149..8440+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |