mRNA_Ecto-sp13_S_contig101370.164.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig101370.164.1
Unique NamemRNA_Ecto-sp13_S_contig101370.164.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig101370.164.1 vs. uniprot
Match: D8LHY7_ECTSI (Heat shock protein 90 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHY7_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 5.520e-14
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    1 FQVEDTEAFANRVQRAMAKTLNLSSMDLLEEMEIPDE 111
            FQVEDTEAFANRVQRAMAKTLNLSSMDLLEEMEIPDE
Sbjct:  713 FQVEDTEAFANRVQRAMAKTLNLSSMDLLEEMEIPDE 749
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BLAST of mRNA_Ecto-sp13_S_contig101370.164.1 vs. uniprot
Match: G3G5W9_9PHAE (Heat shock protein 90 family (Fragment) n=24 Tax=Fucaceae TaxID=3010 RepID=G3G5W9_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.580e-11
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 FQVEDTEAFANRVQRAMAKTLNLSSMDLLEEMEIPDE 111
            FQVEDTE+FA+RVQR MAKTLNLSS++LL+E EIPDE
Sbjct:   44 FQVEDTESFASRVQRIMAKTLNLSSLELLDEAEIPDE 80
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig101370.164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHY7_ECTSI5.520e-14100.00Heat shock protein 90 n=2 Tax=Ectocarpus TaxID=287... [more]
G3G5W9_9PHAE2.580e-1181.08Heat shock protein 90 family (Fragment) n=24 Tax=F... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig101370contigEcto-sp13_S_contig101370:388..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size111
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size111
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462510.095564-CDS-Ecto-sp13_S_contig101370:387..4981681462510.095564-CDS-Ecto-sp13_S_contig101370:387..498Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig101370 388..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig101370.164.1prot_Ecto-sp13_S_contig101370.164.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig101370 388..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig101370.164.1

>prot_Ecto-sp13_S_contig101370.164.1 ID=prot_Ecto-sp13_S_contig101370.164.1|Name=mRNA_Ecto-sp13_S_contig101370.164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=37bp
FQVEDTEAFANRVQRAMAKTLNLSSMDLLEEMEIPDE
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mRNA from alignment at Ecto-sp13_S_contig101370:388..498-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig101370.164.1 ID=mRNA_Ecto-sp13_S_contig101370.164.1|Name=mRNA_Ecto-sp13_S_contig101370.164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101370:388..498- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCAGGTGGAAGATACCGAGGCATTCGCCAACCGGGTACAGCGCGCCAT
GGCCAAGACCCTCAACCTTAGCAGCATGGACCTACTCGAGGAGATGGAGA
TCCCAGATGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig101370:388..498-

>mRNA_Ecto-sp13_S_contig101370.164.1 ID=mRNA_Ecto-sp13_S_contig101370.164.1|Name=mRNA_Ecto-sp13_S_contig101370.164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101370:388..498- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCAGGTGGAAGATACCGAGGCATTCGCCAACCGGGTACAGCGCGCCAT
GGCCAAGACCCTCAACCTTAGCAGCATGGACCTACTCGAGGAGATGGAGA
TCCCAGATGAG
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