prot_Ecto-sp13_S_contig58860.16399.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig58860.16399.1
Unique Nameprot_Ecto-sp13_S_contig58860.16399.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length68
Homology
BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: D8LB85_ECTSI (Protein RER1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB85_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.810e-34
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0
Query:    1 RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQV 61
            RTYQYWLDRSVIYTMWRWGLF VSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQ+
Sbjct:   18 RTYQYWLDRSVIYTMWRWGLFFVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQI 78          
BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: A0A7S2V4J3_9STRA (Protein RER1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4J3_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 5.880e-20
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 0
Query:    1 RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQV 61
            R YQ++LD+S I+T+ RWG F++ + ++ LR+YLV GW+IVTYGLGIFLLNN IGFLSPQV
Sbjct:   18 RRYQHFLDKSTIHTVPRWGFFILCLGIYALRVYLVNGWYIVTYGLGIFLLNNFIGFLSPQV 78          
BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: A0A835YJT4_9STRA (Lactonase, 7-bladed beta-propeller-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJT4_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.260e-19
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 0
Query:    1 RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQV 61
            RTYQ+WLDRSVIY   RW  F V + ++LLR+Y+++GWFIVTYGLGIFLLNN IGFLSPQV
Sbjct:   22 RTYQHWLDRSVIYHTGRWVGFGVLLGVYLLRVYIIQGWFIVTYGLGIFLLNNFIGFLSPQV 82          
BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: A0A482SSL8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSL8_9ARCH)

HSP 1 Score: 78.2 bits (191), Expect = 2.850e-17
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 0
Query:    1 RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQV 61
            R YQY LD+S  + ++RW  F+V+   +L R+YLV GW+IVTYGLGIFLLN LIGFLSPQV
Sbjct:   17 RKYQYLLDKSSPHVLYRWIGFLVAFAGYLTRVYLVNGWYIVTYGLGIFLLNQLIGFLSPQV 77          
BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: A0A7R9YCX7_9STRA (Protein RER1 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCX7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 7.300e-17
Identity = 40/61 (65.57%), Postives = 50/61 (81.97%), Query Frame = 0
Query:    1 RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQV 61
            RTYQ++LD+S IYT  RW  F   + L+LLRIY+V G+F+VTY LGIFLLNNLIGFL+PQ+
Sbjct:   20 RTYQHYLDKSAIYTAPRWLSFFGILALYLLRIYVVNGFFLVTYALGIFLLNNLIGFLTPQL 80          
BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: A0A7S1TP25_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TP25_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 8.830e-17
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 0
Query:    1 RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQV 61
            RTYQ++LD+S IY + RW  F   + L+LLRIY+V G+F+VTY LGIFLLNNLIGFL+PQ+
Sbjct:   38 RTYQHYLDKSTIYVVPRWLGFAGVLALYLLRIYMVNGFFLVTYALGIFLLNNLIGFLTPQM 98          
BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: A0A7S2W0T1_9STRA (Protein RER1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0T1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.510e-16
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 0
Query:    2 TYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQV 61
            T Q WLD S  Y   RW  FVV + L++LR+YLV GWFI+TYGLGI LLNN IGFLSPQ+
Sbjct:   26 TTQQWLDWSTPYVTARWIFFVVLLSLYMLRVYLVNGWFIITYGLGIHLLNNFIGFLSPQM 85          
BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: A0A6U4CB41_9STRA (Protein RER1 n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CB41_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.810e-16
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 0
Query:    1 RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQV 61
            RTYQ++LD+S IY + RW  F   + L+LLRIY+V G+F+VTY LGIFLLNNLIGFL+PQ+
Sbjct:   22 RTYQHYLDKSTIYVVPRWLGFAGVLALYLLRIYMVNGFFLVTYALGIFLLNNLIGFLTPQM 82          
BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: A0A7S1ZDK0_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZDK0_TRICV)

HSP 1 Score: 78.2 bits (191), Expect = 1.970e-16
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 0
Query:    1 RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSP 59
            R  QYWLD+S I+ + RWG+F   + +F LRIY+++G+FIV YGLGIFLLNN I FLSP
Sbjct:   23 RAVQYWLDKSTIHVIPRWGVFATLLAIFFLRIYVIQGYFIVAYGLGIFLLNNFIAFLSP 81          
BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: B8C7S6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7S6_THAPS)

HSP 1 Score: 77.4 bits (189), Expect = 2.230e-16
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 0
Query:    1 RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSP 59
            R  QYWLD+S I+   RW LF V + LF LRIYL++G+FIV YGLGIFLLNN I FLSP
Sbjct:    1 RAIQYWLDKSTIHITPRWILFTVLLSLFFLRIYLIQGYFIVAYGLGIFLLNNFIAFLSP 59          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB85_ECTSI1.810e-3496.72Protein RER1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7S2V4J3_9STRA5.880e-2065.57Protein RER1 n=1 Tax=Fibrocapsa japonica TaxID=946... [more]
A0A835YJT4_9STRA1.260e-1972.13Lactonase, 7-bladed beta-propeller-domain-containi... [more]
A0A482SSL8_9ARCH2.850e-1763.93Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7R9YCX7_9STRA7.300e-1765.57Protein RER1 n=1 Tax=Pinguiococcus pyrenoidosus Ta... [more]
A0A7S1TP25_9STRA8.830e-1763.93Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2W0T1_9STRA1.510e-1665.00Protein RER1 n=1 Tax=Rhizochromulina marina TaxID=... [more]
A0A6U4CB41_9STRA1.810e-1663.93Protein RER1 n=4 Tax=Phaeomonas parva TaxID=124430... [more]
A0A7S1ZDK0_TRICV1.970e-1661.02Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
B8C7S6_THAPS2.230e-1666.10Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004932Retrieval of early ER protein Rer1PFAMPF03248Rer1coord: 2..64
e-value: 1.2E-19
score: 70.7
IPR004932Retrieval of early ER protein Rer1PANTHERPTHR10743PROTEIN RER1coord: 1..61
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 31..36
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..30
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 37..57
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 58..67
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 39..61
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58860contigEcto-sp13_S_contig58860:569..772 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58860.16399.1mRNA_Ecto-sp13_S_contig58860.16399.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig58860 569..772 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig58860.16399.1 ID=prot_Ecto-sp13_S_contig58860.16399.1|Name=mRNA_Ecto-sp13_S_contig58860.16399.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLL
NNLIGFLSPQVKNSCYV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004932Rer1