mRNA_Ecto-sp13_S_contig58860.16399.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58860.16399.1
Unique NamemRNA_Ecto-sp13_S_contig58860.16399.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: D8LB85_ECTSI (Protein RER1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB85_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.810e-34
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:    1 RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQV 183
            RTYQYWLDRSVIYTMWRWGLF VSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQ+
Sbjct:   18 RTYQYWLDRSVIYTMWRWGLFFVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQI 78
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BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: A0A7S2V4J3_9STRA (Protein RER1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4J3_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 5.880e-20
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQV 183
            R YQ++LD+S I+T+ RWG F++ + ++ LR+YLV GW+IVTYGLGIFLLNN IGFLSPQV
Sbjct:   18 RRYQHFLDKSTIHTVPRWGFFILCLGIYALRVYLVNGWYIVTYGLGIFLLNNFIGFLSPQV 78
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BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: A0A835YJT4_9STRA (Lactonase, 7-bladed beta-propeller-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJT4_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.260e-19
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQV 183
            RTYQ+WLDRSVIY   RW  F V + ++LLR+Y+++GWFIVTYGLGIFLLNN IGFLSPQV
Sbjct:   22 RTYQHWLDRSVIYHTGRWVGFGVLLGVYLLRVYIIQGWFIVTYGLGIFLLNNFIGFLSPQV 82
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BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: A0A482SSL8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSL8_9ARCH)

HSP 1 Score: 78.2 bits (191), Expect = 2.850e-17
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQV 183
            R YQY LD+S  + ++RW  F+V+   +L R+YLV GW+IVTYGLGIFLLN LIGFLSPQV
Sbjct:   17 RKYQYLLDKSSPHVLYRWIGFLVAFAGYLTRVYLVNGWYIVTYGLGIFLLNQLIGFLSPQV 77
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BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: A0A7R9YCX7_9STRA (Protein RER1 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCX7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 7.300e-17
Identity = 40/61 (65.57%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQV 183
            RTYQ++LD+S IYT  RW  F   + L+LLRIY+V G+F+VTY LGIFLLNNLIGFL+PQ+
Sbjct:   20 RTYQHYLDKSAIYTAPRWLSFFGILALYLLRIYVVNGFFLVTYALGIFLLNNLIGFLTPQL 80
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BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: A0A7S1TP25_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TP25_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 8.830e-17
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQV 183
            RTYQ++LD+S IY + RW  F   + L+LLRIY+V G+F+VTY LGIFLLNNLIGFL+PQ+
Sbjct:   38 RTYQHYLDKSTIYVVPRWLGFAGVLALYLLRIYMVNGFFLVTYALGIFLLNNLIGFLTPQM 98
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BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: A0A7S2W0T1_9STRA (Protein RER1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0T1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.510e-16
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    4 TYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQV 183
            T Q WLD S  Y   RW  FVV + L++LR+YLV GWFI+TYGLGI LLNN IGFLSPQ+
Sbjct:   26 TTQQWLDWSTPYVTARWIFFVVLLSLYMLRVYLVNGWFIITYGLGIHLLNNFIGFLSPQM 85
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BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: A0A6U4CB41_9STRA (Protein RER1 n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CB41_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.810e-16
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQV 183
            RTYQ++LD+S IY + RW  F   + L+LLRIY+V G+F+VTY LGIFLLNNLIGFL+PQ+
Sbjct:   22 RTYQHYLDKSTIYVVPRWLGFAGVLALYLLRIYMVNGFFLVTYALGIFLLNNLIGFLTPQM 82
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BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: A0A7S1ZDK0_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZDK0_TRICV)

HSP 1 Score: 78.2 bits (191), Expect = 1.970e-16
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSP 177
            R  QYWLD+S I+ + RWG+F   + +F LRIY+++G+FIV YGLGIFLLNN I FLSP
Sbjct:   23 RAVQYWLDKSTIHVIPRWGVFATLLAIFFLRIYVIQGYFIVAYGLGIFLLNNFIAFLSP 81
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BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Match: B8C7S6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7S6_THAPS)

HSP 1 Score: 77.4 bits (189), Expect = 2.230e-16
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSP 177
            R  QYWLD+S I+   RW LF V + LF LRIYL++G+FIV YGLGIFLLNN I FLSP
Sbjct:    1 RAIQYWLDKSTIHITPRWILFTVLLSLFFLRIYLIQGYFIVAYGLGIFLLNNFIAFLSP 59
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58860.16399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB85_ECTSI1.810e-3496.72Protein RER1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7S2V4J3_9STRA5.880e-2065.57Protein RER1 n=1 Tax=Fibrocapsa japonica TaxID=946... [more]
A0A835YJT4_9STRA1.260e-1972.13Lactonase, 7-bladed beta-propeller-domain-containi... [more]
A0A482SSL8_9ARCH2.850e-1763.93Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7R9YCX7_9STRA7.300e-1765.57Protein RER1 n=1 Tax=Pinguiococcus pyrenoidosus Ta... [more]
A0A7S1TP25_9STRA8.830e-1763.93Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2W0T1_9STRA1.510e-1665.00Protein RER1 n=1 Tax=Rhizochromulina marina TaxID=... [more]
A0A6U4CB41_9STRA1.810e-1663.93Protein RER1 n=4 Tax=Phaeomonas parva TaxID=124430... [more]
A0A7S1ZDK0_TRICV1.970e-1661.02Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
B8C7S6_THAPS2.230e-1666.10Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58860contigEcto-sp13_S_contig58860:569..772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score122.9
Seed ortholog evalue5.9e-26
Seed eggNOG ortholog2880.D8LB85
Preferred nameRER1
Model size204
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0000322,GO:0000323,GO:0000324,GO:0001941,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0006621,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0007528,GO:0008104,GO:0008150,GO:0009986,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0030134,GO:0030135,GO:0030137,GO:0030173,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032507,GO:0032879,GO:0032880,GO:0033036,GO:0033130,GO:0033365,GO:0034613,GO:0035437,GO:0042886,GO:0043113,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045185,GO:0046907,GO:0048193,GO:0048518,GO:0050789,GO:0050808,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0051668,GO:0060341,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0071340,GO:0071702,GO:0071705,GO:0071840,GO:0072595,GO:0072657,GO:0097708,GO:0098588,GO:0098791,GO:0099173,GO:1903076,GO:1903078,GO:1903827,GO:1903829,GO:1904375,GO:1904377,GO:1905475,GO:1905477
Exons1
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsCOG5249@1,KOG1688@2759
Cds size204
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463817.9513786-CDS-Ecto-sp13_S_contig58860:568..7721681463817.9513786-CDS-Ecto-sp13_S_contig58860:568..772Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58860 569..772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58860.16399.1prot_Ecto-sp13_S_contig58860.16399.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58860 569..772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58860.16399.1

>prot_Ecto-sp13_S_contig58860.16399.1 ID=prot_Ecto-sp13_S_contig58860.16399.1|Name=mRNA_Ecto-sp13_S_contig58860.16399.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
RTYQYWLDRSVIYTMWRWGLFVVSVCLFLLRIYLVKGWFIVTYGLGIFLL
NNLIGFLSPQVKNSCYV*
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mRNA from alignment at Ecto-sp13_S_contig58860:569..772-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58860.16399.1 ID=mRNA_Ecto-sp13_S_contig58860.16399.1|Name=mRNA_Ecto-sp13_S_contig58860.16399.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58860:569..772- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGACGTACCAGTACTGGTTGGATCGATCAGTGATCTACACCATGTGGCG
ATGGGGGTTGTTTGTCGTATCGGTGTGTCTGTTCCTCTTGAGGATATACC
TGGTGAAGGGCTGGTTCATCGTCACGTACGGGCTGGGGATCTTTCTCCTC
AACAACTTGATCGGCTTCCTCTCCCCCCAGGTAAAAAACTCTTGCTACGT
GTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58860:569..772-

>mRNA_Ecto-sp13_S_contig58860.16399.1 ID=mRNA_Ecto-sp13_S_contig58860.16399.1|Name=mRNA_Ecto-sp13_S_contig58860.16399.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58860:569..772- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGACGTACCAGTACTGGTTGGATCGATCAGTGATCTACACCATGTGGCG
ATGGGGGTTGTTTGTCGTATCGGTGTGTCTGTTCCTCTTGAGGATATACC
TGGTGAAGGGCTGGTTCATCGTCACGTACGGGCTGGGGATCTTTCTCCTC
AACAACTTGATCGGCTTCCTCTCCCCCCAGGTAAAAAACTCTTGCTACGT
GTGA
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