mRNA_Ecto-sp13_S_contig5884.16394.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5884.16394.1
Unique NamemRNA_Ecto-sp13_S_contig5884.16394.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5884.16394.1 vs. uniprot
Match: A0A6H5K4B5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4B5_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.960e-29
Identity = 61/69 (88.41%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:   76 MLRPRDHPVEPGGGSDDEGNDAASSGVCYDAMSSFNVTVSLGHKTPSPPAGSAASRQTGPRHTRTSRFV 282
            MLRPR HPV+P GGSDDEGNDAAS GVCYDAMSSFNVTVSLGHK PSPPAGSAASRQT PRHT TSR V
Sbjct:    1 MLRPRGHPVQPDGGSDDEGNDAASLGVCYDAMSSFNVTVSLGHKNPSPPAGSAASRQTCPRHTSTSRSV 69
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BLAST of mRNA_Ecto-sp13_S_contig5884.16394.1 vs. uniprot
Match: D7FLZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLZ7_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 3.280e-28
Identity = 60/69 (86.96%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:   76 MLRPRDHPVEPGGGSDDEGNDAASSGVCYDAMSSFNVTVSLGHKTPSPPAGSAASRQTGPRHTRTSRFV 282
            MLRPR  PV+PGGGSDDEGNDAASSG+CYDAMSSFNVTVSLGHK PSPPAGSAASRQTGPR T T R V
Sbjct:    1 MLRPRGQPVQPGGGSDDEGNDAASSGMCYDAMSSFNVTVSLGHKNPSPPAGSAASRQTGPRQTSTLRSV 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5884.16394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K4B5_9PHAE1.960e-2988.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLZ7_ECTSI3.280e-2886.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5884contigEcto-sp13_S_contig5884:3810..5288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score120.6
Seed ortholog evalue4.1e-25
Seed eggNOG ortholog2880.D7FLZ7
Preferred nameUNC45A
Model size285
KEGG koko:K19680,ko:K21991
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.cellular component assembly
EggNOG OGsCOG0457@1,KOG1124@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-22_000320.3
Cds size282
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463817.588896-CDS-Ecto-sp13_S_contig5884:3810..40471681463817.588896-CDS-Ecto-sp13_S_contig5884:3810..4047Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5884 3811..4047 -
1681463817.6032882-CDS-Ecto-sp13_S_contig5884:5243..52881681463817.6032882-CDS-Ecto-sp13_S_contig5884:5243..5288Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5884 5244..5288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5884.16394.1prot_Ecto-sp13_S_contig5884.16394.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5884 3811..5288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5884.16394.1

>prot_Ecto-sp13_S_contig5884.16394.1 ID=prot_Ecto-sp13_S_contig5884.16394.1|Name=mRNA_Ecto-sp13_S_contig5884.16394.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
LSLFGAYHTYFRLYEVPRSELRRKEMLRPRDHPVEPGGGSDDEGNDAASS
GVCYDAMSSFNVTVSLGHKTPSPPAGSAASRQTGPRHTRTSRFV
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mRNA from alignment at Ecto-sp13_S_contig5884:3810..5288-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5884.16394.1 ID=mRNA_Ecto-sp13_S_contig5884.16394.1|Name=mRNA_Ecto-sp13_S_contig5884.16394.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1479bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5884:3810..5288- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGAGCCTCTTCGGGGCGTATCATACGTACTTCCGTCTTTATGAGGTTAG
TGTTAACGACACATCGTGGTGCGCAACGGACAGTAGAGCGGCAAGGCGGT
GAGACCGTTGACCTGAGCGCACGATTTATCTCAGCAACAACAGCAGTTAG
TCTAAATACAATAATAGTTGTGATTGTAGTTGTGTACATGACGCAGGATT
ACGGGATGGTTATTGTGCCGACAAAGGCACAGAGGCCATCCCAACTAATA
ATCCGCGAATAAAAGAGACTACTGCAACAATCGCCCACCACTATCTACAT
GGGCGGGCGATTGGAAGTGCACCTTTCCACCATTCGGAAATTTGCGGTTG
GCGATGATACTCCCACTAAATCGAAGAGCACGTACACGCCGACGTCGCTG
CTGCTGCTGCTGCTAATCCAGCCTGGCGAGACTCGCTTCAGTACTTGTTG
TGGTACAGTTAGCTGTATGTTAGCTTTATGAAAATACATGTCGAGTAAGT
TGTCCATGACGTATGCGTAGCAATGTTCTGTCGGCACACACAACACAACG
GGCTACAAATAAATGTCAAGGTCCAACACATATCGAGGGCCCCCTGCTAC
AAATCGGTGTTGTAGGCTGTTTCTCAAACGAATATTTTTTTTTCAATTCG
GTTGGTATCACATTTATTTTCCTAAAACTACGTAATTGCGATCGTTCGCG
AACCTTTTCGTGGGAATTTACGACTGCAAGCCAGATTGGGTTAGTCTCAA
CGAAGGGTGAGTCCATGAGAGATCCGCTCACGCGAGGACCTTCGAGGCCA
CCTCAGGACAAAACAACGGAACGGTTTGGCAAGCTGTCTCGGGTGTGACA
GTACGCACACTGAATTCACGATACTACAGAATTTCATTCGAGTTCAACAG
CCCAAACAATGCTCCCCTCCCGGAGAGCAAGATTGCTCGATCTTGGCACT
GCCCCAGCAACCACACGAGGCAAAGCCTCGCTTGTCCTTGTGTTTGCGGT
TGGTTGTCCAGTGTGGTATGAAAGCGGGAAAAGCTCGTGTAGTTGAAGGG
CGTAAACTAAACATGCAGCTTCACGCGGGAACCTTAAAGTCAAACAATCG
GTGAGTTAGACGAGATTGGAGCTGGCCTACAACAACCGCCGACAATAGAT
GCTCTTTCTGCGACACACGCGTGCCACCGCTGTCTCTAACGTGCGATTCG
AATACCGTGCTCGACGACACTCTTTCGAACCTTGGCACCAGGTGCCGCGA
TCGGAATTGAGAAGGAAGGAAATGTTGAGGCCCCGGGACCATCCAGTGGA
ACCTGGCGGTGGCAGTGACGACGAAGGCAACGATGCGGCTTCTTCGGGCG
TGTGCTACGATGCCATGTCTTCCTTCAACGTCACGGTGTCCCTCGGCCAC
AAAACTCCCTCCCCGCCGGCGGGGTCAGCAGCCTCTCGACAAACTGGTCC
CAGGCACACGCGTACGTCGCGTTTTGTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5884:3810..5288-

>mRNA_Ecto-sp13_S_contig5884.16394.1 ID=mRNA_Ecto-sp13_S_contig5884.16394.1|Name=mRNA_Ecto-sp13_S_contig5884.16394.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5884:3810..5288- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGAGCCTCTTCGGGGCGTATCATACGTACTTCCGTCTTTATGAGGTGCC
GCGATCGGAATTGAGAAGGAAGGAAATGTTGAGGCCCCGGGACCATCCAG
TGGAACCTGGCGGTGGCAGTGACGACGAAGGCAACGATGCGGCTTCTTCG
GGCGTGTGCTACGATGCCATGTCTTCCTTCAACGTCACGGTGTCCCTCGG
CCACAAAACTCCCTCCCCGCCGGCGGGGTCAGCAGCCTCTCGACAAACTG
GTCCCAGGCACACGCGTACGTCGCGTTTTGTT
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