mRNA_Ecto-sp13_S_contig5881.16392.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5881.16392.1
Unique NamemRNA_Ecto-sp13_S_contig5881.16392.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: D8LNS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS2_ECTSI)

HSP 1 Score: 471 bits (1212), Expect = 2.510e-163
Identity = 235/303 (77.56%), Postives = 244/303 (80.53%), Query Frame = 3
Query:  213 ELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLD-MYWYPGGKF*NSTTCVADGVERADHRECVYGFLSDPEDPTAISTGFPLSYSCITNTFNTHIFNTF-------------------------------VNPNITMPNAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQEDPHLKPRTFKMSVVRGAERAVGVSKVIARAAPIRPFRTMNVAPAADDLQDQE 1025
            ELEEG VDSAW TEGGVPDAVFYPRVKLDQLQE TTEEL+IEAIP NTDY+SEGNYVEDGRGQCVIF+TSAAT FVGQERDPHEYLDY HLD MYWYPGGKF NSTTCV DGVE ADHRE VYGFLSDPEDP AISTGFPLSYSCITNT NTHIFNT                                VNPN+TMP AHLSLEMKQQ DSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVA TQ+DPHLKPRTFK SV+RGAERA GV+KVIARAAPIR   +M   PA D  +DQE
Sbjct:   86 ELEEGCVDSAWMTEGGVPDAVFYPRVKLDQLQETTTEELQIEAIPENTDYDSEGNYVEDGRGQCVIFKTSAATTFVGQERDPHEYLDYVHLDQMYWYPGGKFGNSTTCVVDGVEWADHREWVYGFLSDPEDPAAISTGFPLSYSCITNTSNTHIFNTLGIGLTNQNKFMEDDISSYKALFTNFGVHKNTVNPNVTMPYAHLSLEMKQQADSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVATTQQDPHLKPRTFKKSVIRGAERAAGVTKVIARAAPIRHSSSMTATPAVDGFEDQE 388          
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: D8LNQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ3_ECTSI)

HSP 1 Score: 438 bits (1126), Expect = 2.600e-150
Identity = 221/303 (72.94%), Postives = 234/303 (77.23%), Query Frame = 3
Query:  213 ELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLDMYWYPGGKF*NSTTCVADGVERADHRECVYGFLSDPEDPTAISTGFPLSYSCITNTFNTHIFNTF-------------------------------VNPNITMPNAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQEDPHLKPRTFKMSVVRGAERAVGVSKVIARAAPIRPFRTMNVAPAADDLQDQEE 1028
            ELEE  VDSAW TEGG PDAVFYPR KLDQL + TTEE +I AIP  T+++SEGN+VEDGRG CVIF TSAAT FVGQERD HEYLDY HLDMYWYPGGKF NSTTCVA+GVE ADHRE VYGFLSDPED TAISTGFPLSYSCITNT NTHIFNT                                VNPN+TMP AHLSLEMKQQ DSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFV ATQ+DPHLKPRTFK SV+RGAERA GV+KVIARAAP+R    M   P  D  +DQEE
Sbjct:   87 ELEEECVDSAWMTEGGEPDAVFYPREKLDQLHQVTTEERKIAAIPDLTNFDSEGNFVEDGRGHCVIFETSAATDFVGQERDSHEYLDYIHLDMYWYPGGKFGNSTTCVAEGVEWADHREWVYGFLSDPEDSTAISTGFPLSYSCITNTSNTHIFNTLGIGLTNQNKFMEDDISSYKALFTNFGVHKNTVNPNVTMPYAHLSLEMKQQADSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVTATQQDPHLKPRTFKKSVIRGAERAAGVTKVIARAAPVRHSNAM---PGVDGFEDQEE 386          
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: A0A6H5L518_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L518_9PHAE)

HSP 1 Score: 427 bits (1099), Expect = 7.870e-146
Identity = 217/304 (71.38%), Postives = 234/304 (76.97%), Query Frame = 3
Query:  210 VELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLDMYWYPGGKF*NSTTCVADGVERADHRECVYGFLSDPEDPTAISTGFPLSYSCITNTFNTHIFNTF-------------------------------VNPNITMPNAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQEDPHLKPRTFKMSVVRGAERAVGVSKVIARAAPIRPFRTMNVAPAADDLQDQEE 1028
            +ELEE  V+SAWTTEGGVP+AVFYPRV+LDQ QE TTE+L+IEAIP NTD +SEGN +EDGRG+CVIFRTSAATAFVGQERDPHE+LDY  LDMYW PGG    STTCV DGVE  DHRE VYGFLSDP+DP+AISTG  LSYSCITNT NTH FNT                                VNPNIT P AHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAA Q+DPHLKPR+FK SVVRGAERA  VSK IARAAPI P  T + A A D  +D+EE
Sbjct:  109 LELEEKCVNSAWTTEGGVPNAVFYPRVQLDQEQEITTEQLQIEAIPENTDVDSEGNSLEDGRGKCVIFRTSAATAFVGQERDPHEFLDYILLDMYWNPGGTSGKSTTCVPDGVEWTDHREWVYGFLSDPDDPSAISTGVHLSYSCITNTSNTHTFNTMGIGLTQQKKFMDDDKSSYKALFTNFGVHKNVVNPNITTPYAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAAAQQDPHLKPRSFKKSVVRGAERAASVSKAIARAAPINPSITKSAASAVDGFEDEEE 412          
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: A0A6H5JV19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV19_9PHAE)

HSP 1 Score: 403 bits (1036), Expect = 1.060e-136
Identity = 211/347 (60.81%), Postives = 232/347 (66.86%), Query Frame = 3
Query:  213 ELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLD--------------------------------------------MYWYPGGKF*NSTTCVADGVERADHRECVYGFLSDPEDPTAISTGFPLSYSCITNTFNTHIFNTF-------------------------------VNPNITMPNAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQEDPHLKPRTFKMSVVRGAERAVGVSKVIARAAPIRPFRTMNVAPAADDLQDQEE 1028
            ELEE  V SAW TEGG PDAVFYPRVKLDQL + TTEE +I AIP  T+++SEGN  E+GRG CV+F TSA T F+GQERDPHEYLDY HLD                                            MYWYPGGKF NSTTCV +GVE ADHRE VYGFLSDPEDPTAISTGFPLSYSCITNT NTHIFNT                                VNPNITMP AH+SLEMKQQ DSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQ+DPHLKPR+F  S VRGA+R  GV+K++ARAAP++   + + A A D  +DQEE
Sbjct:   37 ELEEECVASAWMTEGGEPDAVFYPRVKLDQLHQVTTEERQINAIPDLTNFDSEGNEQENGRGHCVVFETSAITDFLGQERDPHEYLDYVHLDGILPVGLVANGSLSQHELEPVIGSTVPLSRPCRPDKRMFFADEQMYWYPGGKFGNSTTCVNEGVEWADHREWVYGFLSDPEDPTAISTGFPLSYSCITNTSNTHIFNTLGVGLTNQIKFMSDDISSYKALFTNFGVHKNAVNPNITMPYAHVSLEMKQQADSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQQDPHLKPRSFTKSAVRGAQRVAGVTKMVARAAPVKHTSSTSHASAVDGFEDQEE 383          
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: D8LNQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ1_ECTSI)

HSP 1 Score: 354 bits (908), Expect = 2.830e-118
Identity = 189/272 (69.49%), Postives = 201/272 (73.90%), Query Frame = 3
Query:  213 ELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLDMYWYPGGKF*NSTTCVADGVERADHRECVYGFLSDPEDPTAISTGFPLSYSCITNTFNTHIFNTFVNPNITMPNAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQEDPHLKPRTFKMSVVRGAERAVGVSKVIARAAPIRPFRTMNVAPAADDLQDQEE 1028
            ELEE  VDSAW TEGG PDAVFYPRVKLDQLQE TTEEL+IEAIP NTDY+SEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDY HLD                  GV   +  + +       ED  +       SY  +   F  H     VNPNITMP A+LSLEMKQQ DSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVA TQ+DPHLKPRTFK SVVRGAERA GV+KVIARAAPIR  RT+N A  AD  +DQEE
Sbjct:   74 ELEEECVDSAWMTEGGEPDAVFYPRVKLDQLQETTTEELQIEAIPENTDYDSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYIHLD------------------GVGLTNQNKLM-------EDDQS-------SYKALFTNFGHH--KNVVNPNITMPYAYLSLEMKQQADSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVATTQQDPHLKPRTFKKSVVRGAERAAGVTKVIARAAPIRRSRTVNAASVADGFEDQEE 311          
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: D7FXH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH8_ECTSI)

HSP 1 Score: 275 bits (704), Expect = 1.380e-86
Identity = 148/293 (50.51%), Postives = 185/293 (63.14%), Query Frame = 3
Query:  210 VELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLDMYWYPGG-KF*NSTTCVADGVERADHRECVYGFLSDPEDPTAISTGFPLSYSCITNTFNTHIFNTF-------------------------------VNPNITMPNAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQEDPHLKPRTFKMSVVRGAERAVGVSKVIARAAPIRPFRTMNV 992
            + LE G V+S+W TE G P+A+FY     DQ     T+ L IEA   +T   S    +  GRG CV F+TSAATAFVGQERDP EYLDY  LDMYWYP G +  +STTCV DG E   HRE VY FL+DPED T +ST   LSYSCIT+   +H+FN+                                 + +IT P A LS+E+KQQFDSWEIITE++P+EFAE+ GNIGGFWDL+LILWPL FVAA+Q +P+LKPR F  SV R  ERA G++K +A + P+R   ++ +
Sbjct:   73 ITLELGCVESSWETEAGPPNAIFYNSEGTDQ---NATDPLEIEATWVDT---SAIEGIVKGRGLCVEFKTSAATAFVGQERDPDEYLDYILLDMYWYPSGNETTDSTTCVEDGEEWEPHREWVYAFLTDPEDVTMVSTAVQLSYSCITSASTSHVFNSVGIGLTNQIKYAADDVSSYKAVSINSGVYKDQADADITKPYARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQPEPNLKPRNFAKSVTRTVERASGITKTVANSGPMRRVESIEM 359          
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: D8LNQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ0_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 5.690e-83
Identity = 142/233 (60.94%), Postives = 150/233 (64.38%), Query Frame = 3
Query:  213 ELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLDMYWYPGGKF*NSTTCVADGVERADHRECVYGFLSDPEDPTAISTGFPLSYSCITNTFNTHIFNTF-------------------------------VNPNITMPNAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFW 818
            ELEE  VDSAW TEGG PDAVFYPRVKLDQL + TTEE +I AIP  T+++SEGN  E+                                 MYWYPGGKF NSTTCVA+GVE ADHRE VYGFLSDPEDPTAISTGFPLSYSCITNT NTHIFNT                                VNPNITMP AH+SLEMKQQ DSWEIITESNPYEFAEMFGNIGGFW
Sbjct:   74 ELEEECVDSAWMTEGGKPDAVFYPRVKLDQLHQVTTEERQINAIPDLTNFDSEGNEQEN---------------------------------MYWYPGGKFGNSTTCVAEGVEWADHREWVYGFLSDPEDPTAISTGFPLSYSCITNTSNTHIFNTLGIGLTNQNKFMSDDISSYKALFTNFGVHKNTVNPNITMPYAHVSLEMKQQADSWEIITESNPYEFAEMFGNIGGFW 273          
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: D8LNQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ2_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 8.570e-71
Identity = 104/118 (88.14%), Postives = 110/118 (93.22%), Query Frame = 3
Query:  213 ELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLDMYWYPGGKF*NSTTCVADGVERADHR 566
            ELEEG VDSAW TEGGVPDAVFYPRVKLDQLQE TTEEL+IEAIP NTD++SEGNYVEDGRGQCVIF+TS+ATAFVGQERDPHEYLDY HLDMYWYPGGKF NSTTCVADGV+  DHR
Sbjct:   25 ELEEGCVDSAWMTEGGVPDAVFYPRVKLDQLQETTTEELQIEAIPENTDFDSEGNYVEDGRGQCVIFKTSSATAFVGQERDPHEYLDYIHLDMYWYPGGKFGNSTTCVADGVQWTDHR 142          
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: D8LNP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP9_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 1.180e-64
Identity = 97/118 (82.20%), Postives = 106/118 (89.83%), Query Frame = 3
Query:  213 ELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLDMYWYPGGKF*NSTTCVADGVERADHR 566
            ELE+  V SAW TEGG PDAVFYPRVKL Q QE TTE+L+IEAIP NTD++SEGNYVEDGRGQCV+F+TSAATAFVGQERDPHE+LDY HLDMYWYPGG+F NSTTCVADGVE ADHR
Sbjct:   32 ELEKQCVHSAWMTEGGEPDAVFYPRVKLGQEQETTTEQLQIEAIPENTDFDSEGNYVEDGRGQCVVFKTSAATAFVGQERDPHEFLDYVHLDMYWYPGGEFGNSTTCVADGVEWADHR 149          
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Match: D8LMD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD2_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 3.800e-52
Identity = 111/271 (40.96%), Postives = 147/271 (54.24%), Query Frame = 3
Query:  213 ELEEGGVDSAWTTEGGVPDAVFYPRVKLDQLQEATTEELRIEAIPANTDYNSEGNYVEDGRGQCVIFRTSAATAFVGQERDPHEYLDYTHLDMYWYPGGKF*NSTTCVADGVERADHRECVYGFLSDPEDPTA--ISTGFPLSYSCITNTFNTHIFNTFVNPNITM--------------------------------PNAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAATQEDPHLKPRTFKMSVVRGAE 923
            ELEE  ++SA  T  G   AVFYP  + +Q             IP       E        G CV F TS  + F+GQER+   YLDY  LDMYWYPGG   +S TCV +G E   H E +Y  L D   P +  +STG  + YSCITN  ++H F T+V   +T+                                P A LSL+ +Q+ +S E+ITE++P++ AEMFGN+GGFWDLL+++WP+ FVAA+++DPHLKPR FK SV +G E
Sbjct:   74 ELEEECMESAQLTGWGNTSAVFYPGGEYEQ------------TIPGVGMLTPED-------GWCVEFETSTISQFLGQERNASYYLDYLLLDMYWYPGGTESDSNTCVVEGWE--PHSEWMYVKLKDSGYPESGLVSTGIQVPYSCITNVSSSHSF-TYVGMGVTIEERLGEEPVATNKALSVSTATHKDKVNAAIDKPYAQLSLQFQQEPNSLEVITENDPFDLAEMFGNVGGFWDLLMLVWPIFFVAASRQDPHLKPRNFKKSVAKGLE 322          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5881.16392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D8LNS2_ECTSI2.510e-16377.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNQ3_ECTSI2.600e-15072.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L518_9PHAE7.870e-14671.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV19_9PHAE1.060e-13660.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ1_ECTSI2.830e-11869.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXH8_ECTSI1.380e-8650.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNQ0_ECTSI5.690e-8360.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNQ2_ECTSI8.570e-7188.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNP9_ECTSI1.180e-6482.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMD2_ECTSI3.800e-5240.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5881contigEcto-sp13_S_contig5881:3205..8738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1028
Hectar predicted targeting categoryother localisation
Exons8
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_006300.1
Cds size354
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5881.16392.1prot_Ecto-sp13_S_contig5881.16392.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5881 3259..5467 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463817.2798595-UTR-Ecto-sp13_S_contig5881:3204..32581681463817.2798595-UTR-Ecto-sp13_S_contig5881:3204..3258Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5881 3205..3258 +
1681463817.3394349-UTR-Ecto-sp13_S_contig5881:5467..55471681463817.3394349-UTR-Ecto-sp13_S_contig5881:5467..5547Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5881 5468..5547 +
1681463817.3499625-UTR-Ecto-sp13_S_contig5881:6258..63351681463817.3499625-UTR-Ecto-sp13_S_contig5881:6258..6335Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5881 6259..6335 +
1681463817.3609543-UTR-Ecto-sp13_S_contig5881:7441..75591681463817.3609543-UTR-Ecto-sp13_S_contig5881:7441..7559Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5881 7442..7559 +
1681463817.3749938-UTR-Ecto-sp13_S_contig5881:8144..82801681463817.3749938-UTR-Ecto-sp13_S_contig5881:8144..8280Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5881 8145..8280 +
1681463817.3870342-UTR-Ecto-sp13_S_contig5881:8529..87381681463817.3870342-UTR-Ecto-sp13_S_contig5881:8529..8738Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5881 8530..8738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463817.2903383-CDS-Ecto-sp13_S_contig5881:3258..32831681463817.2903383-CDS-Ecto-sp13_S_contig5881:3258..3283Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5881 3259..3283 +
1681463817.3000998-CDS-Ecto-sp13_S_contig5881:3760..38281681463817.3000998-CDS-Ecto-sp13_S_contig5881:3760..3828Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5881 3761..3828 +
1681463817.311121-CDS-Ecto-sp13_S_contig5881:4305..45471681463817.311121-CDS-Ecto-sp13_S_contig5881:4305..4547Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5881 4306..4547 +
1681463817.3229816-CDS-Ecto-sp13_S_contig5881:5448..54671681463817.3229816-CDS-Ecto-sp13_S_contig5881:5448..5467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5881 5449..5467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5881.16392.1

>prot_Ecto-sp13_S_contig5881.16392.1 ID=prot_Ecto-sp13_S_contig5881.16392.1|Name=mRNA_Ecto-sp13_S_contig5881.16392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
MSVVAIIAYSVWLCYKAAEKAKSPGTSFVLTNEVNKNPDLWICLCNNYGC
DEWNSRKGAWIPRGRPKGAYRTRSSTRESNWTSYKKQRPRNYESKLSLQT
PIITARETTWRTGEASV*
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mRNA from alignment at Ecto-sp13_S_contig5881:3205..8738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5881.16392.1 ID=mRNA_Ecto-sp13_S_contig5881.16392.1|Name=mRNA_Ecto-sp13_S_contig5881.16392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5881:3205..8738+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCCAAGCGAGGTGCTTGAGTCGCACAGGCGTCGGGCGGTGGTGGTTTG GACGATGTCGGTGGTCGCTATCATCGCATGTGAGCGCATCGACACGACAA GATAGTCAAAACCGCAAACCGTGCAACCATGGATGGAACACAACCAGGCA AATAGACAGTCGATCGATCGCCGAGCGGTGTACGTGGAGAGTAAAAACCC TTCCATTGGAGGATTATTGAGCATTATCATCAGGCTGCTTTATTCATGCT TTCACTCTATATCGACTTGTGCCTTGGAATCGCCCAATTTGGGCGATGGC GCAAAGCTTTAAAATCCTTGAAGTTCCACCCCTCGATACGTTATATTCTT CCTTCCCCAGGACAAAGTCAACAGAGCAAGGATTTCGCACACGAATCCCA CCCCGATTAAAGTGATGATAATTGGGTATTACCTGTTGTTCCCGACACCG TATATGGCACTGTGCCACTATACACTATTTCTGTAGAACAGCTTGTTGAT GCAATCACTCCACGCCACCGTTCCGAATGGGTTCGCTATTTTCCGTGTCT TACCAGATTCCGTCTGGCTGTGCTACAAAGCAGCGGAGAAGGCGAAGTCA CCCGGCACGTCTTTCGTATTGACGGTAAGGTGGGTGTCGCTATCTTGCAA CGTGGGCTGGCTTACATGTCGGAAGCAATGGCCTATCTTGTGCCGTGCCT ATACAGAAACGCCGCTTATACTGCCGTTCCTTCACCAACGTTGTCAGATC TTGTTTCCTGCGGTGCTACTGTACATGCGAAATATGGATACCGGGAATCA AATTAGGATTGGGTAAAAGGAAGGGACAGTTGATCGATGCCGCTCACGCA CCCTGTGGTAGGAGGGAAAAATTGATGTAGGTGCTGGGTCTTTGAGGGCG CGCATAGTAACTCCGAGGAGACCAATTTATCTAACCAATGGACTAGATTT ACCGCTGTACCGTGAGATCAAAGCTCACGCCACCAACTCCCCAGGGTTGT ACACGGTGCCCGACGCTCGCCCGCTGACGTGCACAAGTCACACACAGCAA CTGACCCAGTGTTTTTTTGGTTTTTTTCTTGCATACCCCGTTATTTTTCA GAATGAGGTAAACAAGAACCCTGACCTCTGGATTTGCCTGTGTAATAACT ACGGCTGCGACGAGTGGAACTCGAGGAAGGGGGCGTGGATTCCGCGTGGA CGACCGAAGGGGGCGTACCGGACGCGGTCTTCTACCCGAGAGTCAAATTG GACCAGCTACAAGAAGCAACGACCGAGGAACTACGAATCGAAGCTATCCC TGCAAACACCGATTATAACAGCGAGGGAAACTACGTGGAGGACGTGAGCC TCTAAATCTCCTTTCCTTCCTGAATCAATTGTTTTTCTTGTTGGTATTCG GGGCGCGTTTTCATATGAAGACTGGCGGTGTTACCTTGGAATTTTCGGTG GTGCTGTACGTGCCCCGCGCACCTGAAATAGCCATGAAACCACACCCAGG TGGGCGTACAGGTGGGCGACATGCTTCATGCCATGTGGAAATATGCACCC TGTGCTCCGATTCCATAGCCACTTCACGGCAGCAAAATTTTCAGCTTTGA AGATACCTCGCCAACAGCTTTCGGAACAACATGGTTCAGTGTGAGCGCCT TCTTGTTGCCGACGGAGCAATCGAGTTTGAAACCAGTCGGCCTCCGTACC TGCAGTTTCTTCGTTGACAAACACATGTAGATCGGACGGTGTACGAGACG CTACCCGCACTACCGTACCGGAACATTTTTGGGGACGATTGGGGGGGATA CTTGGCCACCGTTTCGATCTCAATTGCGAGGTTCATGGCAGTCGCTCGAA CACCCGAGGACTGCCCGAAAATGGTACAAGAGTCCTGAGAATTCAAGCTC GCAACGTTGAAACCTGGTTATTCTCGACCGTGATACGTCCGCTTTGTTGC AGACCCTTTCGGATGCTCCTGGGTGCCTGGTCCGTGGGAGCGTCGCATCG CCATCCGCGAAGAACAACCAAAGGGCATTCAATCTAACCTTGCCGAACTG CCTGGTGCTAGCCGCTCTCCGCCGTACGCCATACTGTAGCGCAAACTGGC GAGCTTCAAGGAGCCATGATGCCTGTAACATTGTCTTTCTACCATCAAAC GAGCCGTCTGTGCATCTGTGTAACTCTCTCGAAGATTGACTCCTGTACCG TTCTTGCGGATTCGATGGCGTCGTTGTGGCGGTTTGTACAATAGGGGAGA GGCCAGTGTGTGATTTTCAGGACGTCGGCTGCGACAGCCTTCGTTGGACA AGAGCGGGACCCCCACGAGTACCTCGACTACACCCATTTGGATGTGAGCT ACTTGAACCGCCTTACGGCGACACTTGTTGTCCACGAAACACTGACTAGT GTACATGTTGTGTTTCCCATATTTCGTTAAGGTGTTCGATGGGGCCTGCC GGTCGCCCACAGCAAGATGTCTTTCAGTAGCAGTACGCCCACGTGCACGT CTCTGTGAGTCTCTCCCCTGATCTTTTGGAATTATACTGTTGTTGATATT CTTGGAACGTGTATGCATAGACTATGCCTGCCACAGGATCGAAGCGATGT GCCGTACCGCGAGTGCGTGTTGGTTCCCGACGATTTGAACAGCGTATCTC CAAGCCTAGACCTAAGCGTTGGGTTCCACACACATAGAGGAATAACAACT CCCCATACGTTGCAGTGACACACGCCTTTCTACTGTGGCGGAAAACGCAC CGACCGAGGGGAGTGAAATTGGCGCGGGGGAAATTGGATATTCTCCCGAT AGTCTGAACAGCGCACACGGCGCAAGGGGCTGAAGGCTTTTCGGCAGGAA GCAAAATATCCCTCGGGCACATGTAGATAGAAATGATCGCCGCCAACGGA TCTCGAAGGCCACATGGGTTGGCAAACATTCTCGGAGCCAACGTTCATAC CGCTGTCTCGGAGCCAACGTTCATACCGCTGTCTCGGAGCCAACGTTCAT ACCGCTGTCCCGGTTGTGTCACCCCGACAACCGTGTATGCCTTTCGCTGA ACAGATGTACTGGTACCCCGGCGGCAAATTTTGAAACTCTACGACTTGCG TCGCTGACGGAGTAGAGCGGGCGGACCACAGGTGAAGATACGTTGTTGCT AGGACTAGGGTATGGCGGGCGCCCGCCCCTGGGGTTTGACGGCCACCGGG GATCACACTACAGTCTTGGCGTATTCGTACATCGCTTTGAAAGTTAAGCT ATGGGCGGTATTCTCGCACGATCGTCGGAAGCCGTCGCGCCTCACCGAGC AGTCGTAGTGGTATTCCTCCTGCGCGTCATCTACTGACGGTGTAGCTCGT TTATTGCGTCTGTCGATTTGAACTCTATTGGAGAATCGTCTTTGTGAGGG AGGCATGCCGAGAGGTACACCACAAGCCACTACGAGGAAGAAAGGCGACA GCATCGTTTCATGATAAGGGTAGCTGGCGGTTTGCGGTTTGCGGTGGAAC CAAGTTCATACGATCGTTTCGCGAGAAGCCCTTAATCTATGCGGCCCAAT AATAGTGGTCGTTGGTTGATTGTTGATGTTCAATTGGCAGCAGGCCATGG CACGCAACCCGCAACATGACGTGGCATCCCGTCCCCAACCCTACTTGTAG CGGAGTGTGTGAGTAGCGCGTGAAATCGCACGTGTGCAGTATGAGGCCAA ACAGGCATGATATTCAAAGGAACGCGGAAGAGAGTTGGTGTCAATCGTTT TTTGCGTCTTACGGACGTACCCCACCGCCACCTCGCCAGTAACCTCGGCG AAAACATGCGCTCTAAGCGTTACAGGCAATGCTTTCAGCATTGTTTTTTC GTCCCCCAAAAGGTTGTACTGGATGACTTACGGCGAAAAACACAATTAAT AGTCAATTTTGGGCAAAACAATGGTACAGGCATACCTAAAAACAATATGT GCTCGTTGTTGGACATCTGCGTATTAACAGAGCACAGAAATATGTCCCCG ACATTGGAATTTCCGATCTACGGCAGCCTATATCTAGTACATGTACCGTT TGGTGTGGCGGGTTTACCCTTTACATGAACTGATCACCGGATGGATGTCT TCGTTCACCTGCAGATAAACCTCACGGAGTTGTCTCCTTCACGGTGCGGT CGAAGATTTATCAGATCAATATTTTCAGTTTTGACCGCCTCTGTGCACTA CTTCACCACGCATTTTCCGTCCCCTGTTCTGCGGCAGGGAGTGTGTTTAT GGCTTCCTGAGCGACCCCGAGGATCCCACAGCGATTTCAACAGGATTTCC GTTGTCCTACAGCTGCATCACGAATACCTTCAACACCCACATCTTCAACA CGTTCGTGAGCAAGAATTCCTCAAACCGGTGTCCGGAGACGAGTAGATGC TGATGTTTGGCGATGTTGGAGAAATTTTTATCTTGTACGTGGGCAGTCGC GACTCACGTTGTCGCATTTATTCCACACCCGCCTTCACCATCTCCATTGA TAATGTAATCCAAGAAGATCATAGAACAACACATTAAGTCACTTTGAGAT GTGACGTTAGTTTTGTCCTTCTGACTAGCCGGCAATGGTCAAGTGTGTGC TAGAGAAGCCATTTTCCCAGCAAGTCGGCTCACCATTCTGTGTTTGTGTA CGTGCTTCGCTCCTTGTGTTGTCGGTGTTGTCAGGGCATTGGGCTCACCT ACCAGAACAAGTTTATGGACGACGACCAATCGTCGTACAAGGCGCTGTTT ACGAATTTTGGGGTGCACAAGAACGAGGTACGTCCGACCTGCAGCTGCAG CACTTTCGTATCTTGTTTCCGTCACTGTCGTGTTGTGGTTGTTGTTGTTC TTGTTGTTGTTGATGGTGATGTTTTTGTCTAGTGGCCCTGCAAACTTCCG GCACTTCTTATTCGTCCGAAATCGTTTTTCCACAACGCAGGTGAACCCAA ACATCACAATGCCAAATGCACATCTGTCTCTGGAGATGAAGCAGCAGTTC GACTCTTGGGAGATCATCACAGAGTCCAACCCATACGAGTTCGCCGAGAT GTTTGGAAATATTGGCGGATTTTGGGGTGAGTGAGACAAAACGAACCGGC ACATGTAGTACGTCGCGGAATTGTCGAACATTCTTCGCCCTGTAGTGGTG TCATCCCCGCCCGTGTGTCTAGGAGAACAGACGTTCTGCCCTAGCGACTC GCGAAGATTCTTTGGTGACGAATCACGTGGCGTGCAACGACCGCTTATGC TTTAGGAACGATTGAACCTGTTGCCGGCGTTGCCTCGACCGCACGCACCC TTTCCGCTGGCTCCCACCCCCTCAGATCTTCTTCTCATACTGTGGCCCTT GTGCTTCGTCGCGGCCACTCAAGAAGATCCCCACCTCAAACCTCGCACCT TCAAAATGTCAGTCGTGAGGGGGGCCGAACGTGCGGTAGGTGTCTCCAAA GTGATCGCGCGTGCGGCGCCCATCAGACCCTTCAGGACGATGAACGTGGC GCCTGCAGCAGATGACTTACAAGACCAAGAAGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5881:3205..8738+

>mRNA_Ecto-sp13_S_contig5881.16392.1 ID=mRNA_Ecto-sp13_S_contig5881.16392.1|Name=mRNA_Ecto-sp13_S_contig5881.16392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5881:3205..8738+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGTGGTCGCTATCATCGCATATTCCGTCTGGCTGTGCTACAAAGC
AGCGGAGAAGGCGAAGTCACCCGGCACGTCTTTCGTATTGACGAATGAGG
TAAACAAGAACCCTGACCTCTGGATTTGCCTGTGTAATAACTACGGCTGC
GACGAGTGGAACTCGAGGAAGGGGGCGTGGATTCCGCGTGGACGACCGAA
GGGGGCGTACCGGACGCGGTCTTCTACCCGAGAGTCAAATTGGACCAGCT
ACAAGAAGCAACGACCGAGGAACTACGAATCGAAGCTATCCCTGCAAACA
CCGATTATAACAGCGAGGGAAACTACGTGGAGGACGGGAGAGGCCAGTGT
GTGA
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