mRNA_Ecto-sp13_S_contig5878.16386.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5878.16386.1
Unique NamemRNA_Ecto-sp13_S_contig5878.16386.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5878.16386.1 vs. uniprot
Match: A0A6H5KH43_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH43_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.310e-18
Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:   58 ALSSTNPFATWFRSARSPSPASGGICRAVRAVSATLSSLVCPCFERMHD 204
            A SSTNPFATWF  ARSPSPA+GGICRAVRAVSATLSSLVCPCFERM D
Sbjct:  376 APSSTNPFATWFHFARSPSPATGGICRAVRAVSATLSSLVCPCFERMDD 424
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BLAST of mRNA_Ecto-sp13_S_contig5878.16386.1 vs. uniprot
Match: A0A6H5J4Q7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4Q7_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 6.430e-17
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   43 ADVAAALSSTNPFATWFRSARSPSPASGGICRAVRAVSATLSSLVCPCFERMHDD 207
            AD A AL +TN F  WFRS RSPSPA+G +CRA+RAV ATLSSLVCPCFERM+DD
Sbjct:  174 ADDAPALRTTNGFMAWFRSPRSPSPATGRMCRAMRAVLATLSSLVCPCFERMYDD 228
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BLAST of mRNA_Ecto-sp13_S_contig5878.16386.1 vs. uniprot
Match: D7G3B3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B3_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 9.080e-15
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   52 AAALSSTNPFATWFRSARSPSPASGGICRAVRAVSATLSSLVCPCFERMHD 204
            A A  +TN F +WFRS RSPSP +G +CRA+RAVSATLSSLVCPCFERM+D
Sbjct:  178 APASRTTNGFVSWFRSPRSPSPGTGRMCRAMRAVSATLSSLVCPCFERMYD 228
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5878.16386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KH43_9PHAE1.310e-1889.80Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J4Q7_9PHAE6.430e-1774.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3B3_ECTSI9.080e-1572.55Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5878contigEcto-sp13_S_contig5878:4866..5099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size234
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-28_002480.1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463816.8268223-CDS-Ecto-sp13_S_contig5878:4865..50991681463816.8268223-CDS-Ecto-sp13_S_contig5878:4865..5099Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5878 4866..5099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5878.16386.1prot_Ecto-sp13_S_contig5878.16386.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5878 4866..5099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5878.16386.1

>prot_Ecto-sp13_S_contig5878.16386.1 ID=prot_Ecto-sp13_S_contig5878.16386.1|Name=mRNA_Ecto-sp13_S_contig5878.16386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
GARGGGGVDGGGYDADVAAALSSTNPFATWFRSARSPSPASGGICRAVRA
VSATLSSLVCPCFERMHDDDDDDDDDS*
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mRNA from alignment at Ecto-sp13_S_contig5878:4866..5099+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5878.16386.1 ID=mRNA_Ecto-sp13_S_contig5878.16386.1|Name=mRNA_Ecto-sp13_S_contig5878.16386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5878:4866..5099+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCCCGCGGCGGTGGCGGCGTTGACGGCGGCGGCTACGACGCTGACGT
TGCCGCGGCTCTGTCGTCGACGAACCCCTTCGCCACGTGGTTCCGGTCTG
CCCGTTCGCCGAGCCCGGCGTCTGGGGGGATTTGCCGGGCGGTGAGGGCG
GTGTCAGCGACATTGTCGTCGTTGGTGTGTCCGTGCTTCGAGAGGATGCA
CGATGACGACGACGACGACGACGACGATAGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5878:4866..5099+

>mRNA_Ecto-sp13_S_contig5878.16386.1 ID=mRNA_Ecto-sp13_S_contig5878.16386.1|Name=mRNA_Ecto-sp13_S_contig5878.16386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5878:4866..5099+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCCCGCGGCGGTGGCGGCGTTGACGGCGGCGGCTACGACGCTGACGT
TGCCGCGGCTCTGTCGTCGACGAACCCCTTCGCCACGTGGTTCCGGTCTG
CCCGTTCGCCGAGCCCGGCGTCTGGGGGGATTTGCCGGGCGGTGAGGGCG
GTGTCAGCGACATTGTCGTCGTTGGTGTGTCCGTGCTTCGAGAGGATGCA
CGATGACGACGACGACGACGACGACGATAGCTAG
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