mRNA_Ecto-sp13_S_contig5875.16382.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5875.16382.1
Unique NamemRNA_Ecto-sp13_S_contig5875.16382.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5875.16382.1 vs. uniprot
Match: A0A6H5L1D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D3_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 1.510e-66
Identity = 112/127 (88.19%), Postives = 120/127 (94.49%), Query Frame = 1 
Query:    1 VVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDDDIGADLQRDTRASYEALKKFMDKQQIKRDKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNENVRKWLDSISVAAST 381
            VVTAKVALNATTGL+VDIS+FLKDVKDGLV ELVDRTLDE ALL AVSGDDDIGA+LQRDTRASYEALKKFMDK+Q+ R KNARDGDGYIDFRDEMKRVTDGRGGMVWVRN+NV+KWLDS S+AA T
Sbjct:  170 VVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTLDE-ALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPT 295
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BLAST of mRNA_Ecto-sp13_S_contig5875.16382.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 2.000e-63
Identity = 112/127 (88.19%), Postives = 121/127 (95.28%), Query Frame = 1 
Query:    1 VVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDDDIGADLQRDTRASYEALKKFMDKQQIKRDKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNENVRKWLDSISVAAST 381
            VVTAKVALNATTGL+VDIS+FLKDVKDGLV ELVDRT+DEEALL AVSGDDDIGA+LQRDTRASYEALKKFMDK+Q+ R KNARDGDGYIDFRDEMKRVTDGRGGMVWVRN+NV+KWLDS S+AA T
Sbjct:  838 VVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTIDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPT 964
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BLAST of mRNA_Ecto-sp13_S_contig5875.16382.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 9.060e-63
Identity = 113/127 (88.98%), Postives = 120/127 (94.49%), Query Frame = 1 
Query:    1 VVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDDDIGADLQRDTRASYEALKKFMDKQQIKRDKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNENVRKWLDSISVAAST 381
            VVTAKVALNATTGL+VDISDFLKDVKDGLVEELVDRTLD+EALL AV GDD+IGADLQRDTRASYEALKKFMDK+QI+R KN RDGDGYIDFRDEMKRV DGRGGMVWVRNENV+KWLDS S+AA T
Sbjct: 1185 VVTAKVALNATTGLHVDISDFLKDVKDGLVEELVDRTLDDEALLRAVLGDDNIGADLQRDTRASYEALKKFMDKEQIERVKNTRDGDGYIDFRDEMKRVPDGRGGMVWVRNENVQKWLDSRSIAAPT 1311
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BLAST of mRNA_Ecto-sp13_S_contig5875.16382.1 vs. uniprot
Match: A0A6H5K516_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 1.200e-62
Identity = 110/127 (86.61%), Postives = 121/127 (95.28%), Query Frame = 1 
Query:    1 VVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDDDIGADLQRDTRASYEALKKFMDKQQIKRDKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNENVRKWLDSISVAAST 381
            VVTA+VALNATTGL+V+IS+FL+DVKDGLV ELVDRTLDEEALL AVSGDDDIGA+LQRDTRASYEALKKFMDK+Q+ R KNARDGDGYIDFRDEMKRVTDGRGGMVWVRN+NV+KWLDS S+AA T
Sbjct:  670 VVTARVALNATTGLDVNISNFLQDVKDGLVNELVDRTLDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPT 796
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BLAST of mRNA_Ecto-sp13_S_contig5875.16382.1 vs. uniprot
Match: A0A6H5KSY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY4_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 1.290e-60
Identity = 105/127 (82.68%), Postives = 117/127 (92.13%), Query Frame = 1 
Query:    1 VVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDDDIGADLQRDTRASYEALKKFMDKQQIKRDKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNENVRKWLDSISVAAST 381
            VVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDE+ALL AV G+D IGAD+QRDTRASYEALK FM+ ++ +R KNARDGDGYIDFR+EMKRVT+GRGGMVWVRN+NV+KWL+S S AA T
Sbjct:  394 VVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEDALLRAVLGEDSIGADMQRDTRASYEALKVFMENEERRRRKNARDGDGYIDFREEMKRVTNGRGGMVWVRNDNVQKWLESRSTAAPT 520
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BLAST of mRNA_Ecto-sp13_S_contig5875.16382.1 vs. uniprot
Match: A0A6H5JYD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD1_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 4.500e-60
Identity = 109/127 (85.83%), Postives = 118/127 (92.91%), Query Frame = 1 
Query:    1 VVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDDDIGADLQRDTRASYEALKKFMDKQQIKRDKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNENVRKWLDSISVAAST 381
            VVTAKVALNATTGL+VDIS+FLKDVKDGLV ELVDRTLDE ALL AVSGDDDIGA+LQ DTRASYEALKKFMD++Q+ R KNARDGDGYID RDEMKRVTDGRGGMVWVRN+NV+KWLDS S+AA T
Sbjct:  614 VVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTLDE-ALLRAVSGDDDIGAELQTDTRASYEALKKFMDQEQVDRVKNARDGDGYIDLRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPT 739
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BLAST of mRNA_Ecto-sp13_S_contig5875.16382.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 1.030e-55
Identity = 103/125 (82.40%), Postives = 112/125 (89.60%), Query Frame = 1 
Query:    1 VVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDDDIGADLQRDTRASYEALKKFMDKQQIKRDKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNENVRKWLDSISVAA 375
            VVTAKVALNA TGLNVDISDFLKDVKDGLVEELVDRTLDE+ALL AVSGDD +GADLQRDTRASYEALK FM+ ++ +R KNARDGDGYI+FR+EMKR+ DGRGG VWVRNENVRKWL S S  A
Sbjct:  905 VVTAKVALNAVTGLNVDISDFLKDVKDGLVEELVDRTLDEDALLRAVSGDDTVGADLQRDTRASYEALKVFMENEERRRRKNARDGDGYIEFREEMKRLPDGRGGEVWVRNENVRKWLASNSSPA 1029
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BLAST of mRNA_Ecto-sp13_S_contig5875.16382.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 3.810e-54
Identity = 98/125 (78.40%), Postives = 112/125 (89.60%), Query Frame = 1 
Query:    1 VVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDDDIGADLQRDTRASYEALKKFMDKQQIKRDKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNENVRKWLDSISVAA 375
            VVTAKVALNAT GLNV+IS+FLKDVKDGL +ELVDR+LDE+ALL  VSG++D+ AD+Q DTRASYEALKK MDK+Q+ R KNARDGDGYIDFRD+MKRV DGRGGMVWVRNENV++WLDS S  A
Sbjct: 1118 VVTAKVALNATAGLNVNISEFLKDVKDGLADELVDRSLDEDALLRVVSGEEDVDADMQNDTRASYEALKKLMDKEQVGRLKNARDGDGYIDFRDKMKRVPDGRGGMVWVRNENVQRWLDSHSNTA 1242
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BLAST of mRNA_Ecto-sp13_S_contig5875.16382.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 3.860e-54
Identity = 97/127 (76.38%), Postives = 115/127 (90.55%), Query Frame = 1 
Query:    4 VTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDDDIGADLQRDTRASYEALKKFMDKQQIKRDKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNENVRKWLDSISVAASTS 384
            VTAKVAL AT+GL+VD+SDFLKDVKDGLV ELVD TLDE+ALL  VSG++D+GAD+++DTRASYEALKKFMDK+Q+ R KNARDGDGY+DFRD+MKRV DGRGGMVW+RNENV++W DS S AA +S
Sbjct: 1401 VTAKVALKATSGLDVDLSDFLKDVKDGLVGELVDPTLDEDALLRIVSGEEDVGADMRKDTRASYEALKKFMDKEQMDRLKNARDGDGYVDFRDKMKRVADGRGGMVWIRNENVQQWTDSRSNAALSS 1527
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BLAST of mRNA_Ecto-sp13_S_contig5875.16382.1 vs. uniprot
Match: A0A6H5KRM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRM3_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 3.660e-52
Identity = 82/113 (72.57%), Postives = 101/113 (89.38%), Query Frame = 1 
Query:   46 VDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGDDDIGADLQRDTRASYEALKKFMDKQQIKRDKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNENVRKWLDSISVAASTS 384
            +D+SDFLKDVKDGLVEELVDRTL+E+ALL  +SG++DIGAD+Q+DTRAS+EA+KKFMDK+++ R K AR  DGYIDFRDEM RVTDG+GGM WVRN+N++KWLD  S+AA TS
Sbjct:    1 MDMSDFLKDVKDGLVEELVDRTLNEDALLRVISGEEDIGADMQQDTRASFEAVKKFMDKEELSRRKTARGDDGYIDFRDEMTRVTDGKGGMEWVRNKNIQKWLDLHSIAAQTS 113
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5875.16382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5L1D3_9PHAE1.510e-6688.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1K4_9PHAE2.000e-6388.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LJS7_ECTSI9.060e-6388.98LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K516_9PHAE1.200e-6286.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSY4_9PHAE1.290e-6082.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYD1_9PHAE4.500e-6085.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZA1_ECTSI1.030e-5582.40LRR-GTPase of the ROCO family, incomplete sequence... [more]
D7FUC3_ECTSI3.810e-5478.40LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LCS7_ECTSI3.860e-5476.38LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KRM3_9PHAE3.660e-5272.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5875contigEcto-sp13_S_contig5875:5294..5680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score217.6
Seed ortholog evalue3.3e-54
Seed eggNOG ortholog2880.D8LJS7
Model size387
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
Exons1
EggNOG OGs2CYK8@1,2S4YE@2759
EC3.2.1.21
Cds size387
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463816.658159-CDS-Ecto-sp13_S_contig5875:5293..56801681463816.658159-CDS-Ecto-sp13_S_contig5875:5293..5680Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5875 5294..5680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5875.16382.1prot_Ecto-sp13_S_contig5875.16382.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5875 5294..5680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5875.16382.1

>prot_Ecto-sp13_S_contig5875.16382.1 ID=prot_Ecto-sp13_S_contig5875.16382.1|Name=mRNA_Ecto-sp13_S_contig5875.16382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
VVTAKVALNATTGLNVDISDFLKDVKDGLVEELVDRTLDEEALLGAVSGD
DDIGADLQRDTRASYEALKKFMDKQQIKRDKNARDGDGYIDFRDEMKRVT
DGRGGMVWVRNENVRKWLDSISVAASTS*
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mRNA from alignment at Ecto-sp13_S_contig5875:5294..5680-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5875.16382.1 ID=mRNA_Ecto-sp13_S_contig5875.16382.1|Name=mRNA_Ecto-sp13_S_contig5875.16382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5875:5294..5680- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTGACCGCAAAGGTGGCACTGAACGCAACGACAGGACTGAACGTGGA
TATCTCGGATTTCCTGAAGGACGTGAAAGATGGGTTGGTCGAGGAGCTAG
TCGACCGCACTCTCGACGAGGAGGCGCTGCTTGGTGCTGTTTCGGGTGAC
GACGACATCGGCGCAGATTTGCAAAGGGACACGAGGGCCTCGTATGAAGC
GCTGAAGAAATTCATGGACAAGCAACAAATTAAGAGGGATAAGAACGCCC
GGGATGGTGATGGCTACATCGATTTCAGGGACGAGATGAAGCGTGTCACC
GACGGGAGGGGCGGGATGGTGTGGGTTCGGAACGAAAACGTTCGAAAGTG
GTTGGACTCGATTTCGGTTGCTGCTTCAACTAGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5875:5294..5680-

>mRNA_Ecto-sp13_S_contig5875.16382.1 ID=mRNA_Ecto-sp13_S_contig5875.16382.1|Name=mRNA_Ecto-sp13_S_contig5875.16382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5875:5294..5680- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTGACCGCAAAGGTGGCACTGAACGCAACGACAGGACTGAACGTGGA
TATCTCGGATTTCCTGAAGGACGTGAAAGATGGGTTGGTCGAGGAGCTAG
TCGACCGCACTCTCGACGAGGAGGCGCTGCTTGGTGCTGTTTCGGGTGAC
GACGACATCGGCGCAGATTTGCAAAGGGACACGAGGGCCTCGTATGAAGC
GCTGAAGAAATTCATGGACAAGCAACAAATTAAGAGGGATAAGAACGCCC
GGGATGGTGATGGCTACATCGATTTCAGGGACGAGATGAAGCGTGTCACC
GACGGGAGGGGCGGGATGGTGTGGGTTCGGAACGAAAACGTTCGAAAGTG
GTTGGACTCGATTTCGGTTGCTGCTTCAACTAGCTAA
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