mRNA_Ecto-sp13_S_contig5870.16376.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5870.16376.1
Unique NamemRNA_Ecto-sp13_S_contig5870.16376.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5870.16376.1 vs. uniprot
Match: D7G7I5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I5_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 2.990e-51
Identity = 101/111 (90.99%), Postives = 102/111 (91.89%), Query Frame = 1 
Query:  265 ALTEPTSLFTPSPLPDVTTTPATVASSGGGDTSTMSVVAVAVGGGLVVGAIATLILLFKTGRLKLCRNGSSRGPSPGVGPIPVAAGPSAMESARRGMQIPAAIQYPEALRA 597
            ALTE TS FTP PLPD+TTTPATVASSGGGD STMSVVAVAVGGGLVVGAIATLILLFKTGRLK CRNGSS G S GVGPIP AAGPSAMESARRGMQIPAAIQYPEALRA
Sbjct:  232 ALTESTSPFTPPPLPDITTTPATVASSGGGDPSTMSVVAVAVGGGLVVGAIATLILLFKTGRLKHCRNGSSHGTSRGVGPIPAAAGPSAMESARRGMQIPAAIQYPEALRA 342
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BLAST of mRNA_Ecto-sp13_S_contig5870.16376.1 vs. uniprot
Match: A0A6H5K4G7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4G7_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 4.580e-42
Identity = 89/111 (80.18%), Postives = 92/111 (82.88%), Query Frame = 1 
Query:  265 ALTEPTSLFTPSPLPDVTTTPATVASSGGGDTSTMSVVAVAVGGGLVVGAIATLILLFKTGRLKLCRNGSSRGPSPGVGPIPVAAGPSAMESARRGMQIPAAIQYPEALRA 597
            ALTE TS FTPSPLPD+TTTPATVASSGGG            GGGLVVGAIA LILLFKTGRLK CRNG+S GPSPGVG IP AAGPSAMESARRGMQ+PAAIQYPEALRA
Sbjct:  267 ALTESTSPFTPSPLPDITTTPATVASSGGG-----------FGGGLVVGAIAILILLFKTGRLKHCRNGNSHGPSPGVGQIPAAAGPSAMESARRGMQLPAAIQYPEALRA 366
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BLAST of mRNA_Ecto-sp13_S_contig5870.16376.1 vs. uniprot
Match: D7FXV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV8_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 2.450e-35
Identity = 87/140 (62.14%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  178 QANVLTAAPIVLYAP-DAXXXXXXXXXXXPALTEPTSLFTPSPLPDVTTTPATVASSGGGDTSTMSVVAVAVGGGLVVGAIATLILLFKTGRLKLCRNGSSRGPSPGVGPIPVAAGPSAMESARRGMQIPAAIQYPEALR 594
            +    T API + +P +            P+ TE T  FT SPLP+ TTTPATVASSGGGDTSTMSVVA AVGGGLVVGAIA ++LLFKTGRLK C N +S  PSPGVG IP  A PSA  SA  G Q+PAA+QYPEALR
Sbjct:  296 ETETFTPAPIAIISPRETVSPLTTNPFPSPSFTESTPPFTLSPLPEGTTTPATVASSGGGDTSTMSVVAGAVGGGLVVGAIAAVVLLFKTGRLKPCGNDNSSEPSPGVGSIPAGA-PSATSSAIAGTQLPAAMQYPEALR 434
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BLAST of mRNA_Ecto-sp13_S_contig5870.16376.1 vs. uniprot
Match: D7FYB8_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB8_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 4.230e-21
Identity = 61/109 (55.96%), Postives = 76/109 (69.72%), Query Frame = 1 
Query:  271 TEPTSLFTPSPLPDVTTTPATVASSGGGDT--STMSVVAVAVGGGLVVGAIATLILLFKTGRLKLCRNGSSRGPSPGVGPIPVAAGPSAMESARRGMQIPAAIQYPEAL 591
            T PT+L T SPL D TT PAT+ASSG GD+  +T+ +VA  +G G        +++LFKTGRLK CR+G+  GPSPG+G IP AA PSA  SA  G+Q+P AIQYPE L
Sbjct:  166 TAPTALLTLSPLLDGTTAPATIASSGRGDSDSATVGLVAGVLGVGXXXXXXGAVVVLFKTGRLKSCRHGTPNGPSPGMGSIPAAA-PSATSSAMEGIQLPPAIQYPEVL 273
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5870.16376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G7I5_ECTSI2.990e-5190.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4G7_9PHAE4.580e-4280.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXV8_ECTSI2.450e-3562.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FYB8_ECTSI4.230e-2155.96Ferric reductase n=1 Tax=Ectocarpus siliculosus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5870contigEcto-sp13_S_contig5870:44..1300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size602
Hectar predicted targeting categoryother localisation
Exons3
Cds size600
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463816.0687163-CDS-Ecto-sp13_S_contig5870:43..1491681463816.0687163-CDS-Ecto-sp13_S_contig5870:43..149Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5870 44..149 +
1681463816.08857-CDS-Ecto-sp13_S_contig5870:393..6421681463816.08857-CDS-Ecto-sp13_S_contig5870:393..642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5870 394..642 +
1681463816.1017423-CDS-Ecto-sp13_S_contig5870:1055..13001681463816.1017423-CDS-Ecto-sp13_S_contig5870:1055..1300Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5870 1056..1300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5870.16376.1prot_Ecto-sp13_S_contig5870.16376.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5870 44..1300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5870.16376.1

>prot_Ecto-sp13_S_contig5870.16376.1 ID=prot_Ecto-sp13_S_contig5870.16376.1|Name=mRNA_Ecto-sp13_S_contig5870.16376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp
NPNSYVPSGRYARAYPCSRRAYPPYPPSHHAHPSSCIELTPGPITLSSSI
TTPSPTPGDQANVLTAAPIVLYAPDAVSSPTATSFPTPALTEPTSLFTPS
PLPDVTTTPATVASSGGGDTSTMSVVAVAVGGGLVVGAIATLILLFKTGR
LKLCRNGSSRGPSPGVGPIPVAAGPSAMESARRGMQIPAAIQYPEALRA*
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mRNA from alignment at Ecto-sp13_S_contig5870:44..1300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5870.16376.1 ID=mRNA_Ecto-sp13_S_contig5870.16376.1|Name=mRNA_Ecto-sp13_S_contig5870.16376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1257bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5870:44..1300+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACCCCAACTCCTATGTCCCCTCCGGTCGCTACGCCCGAGCCTACCCCTG
CTCCCGTCGAGCCTACCCCCCCTACCCCCCTTCCCATCACGCCCACCCCA
GCTCCTGTGTCCCCTCCGACCGCCATACCTTCTCCTACCCCTACTCCCGC
CGAGCCTACGGCCCCTCTCACTCCTTCCCCCATCGCCCTCTCCCCCCCAG
CTCCTGCCTCCCCTCCGACCACCATGCCTTCTCCTACGCCTGCTCCCGCC
GAGCCTTCGACCCCTCTCACTCCTGCCCCCATCGCCCTCTCCCCCCCAGC
TCCTGCATCCCCTCCGACCACCACGCCTTCTCCTACGCCAGGGGGTCGAG
GTATCGAACTCACTCCCGGTCCCATCACCCTCTCTAGTTCGATCACCACG
CCTTCTCCTACACCTGGTGACCAAGCTAACGTGCTCACTGCCGCTCCCAT
CGTCCTCTACGCGCCGGACGCTGTCTCCTCTCCCACCGCCACGTCTTTCC
CTACCCCTGCTCTCACCGAGCCTACTTCCCTTTTTACCCCATCACCACTG
CCTGATGTCACGACTACTCCGGCCACGGTGGCTTCATCTGGGGGAGGAGG
TAAAAATAATGACGTAGATTTTGTTCGTCAACTCAGATGTAGCCGCCGTC
CTCATGGAAATGTCGTATTGGCACGACCGGTTCTTTGGTTTCATCTGTGT
AACCCCATGGAATCAATTGCGAAGTTGTACACCCTTCAATGGAGATGGGT
GATATTCAAGATTGCATCCTCCAACAACTGCACACACTTACCGTTCATCC
TTCCGGTTTCACTCTTGTGTTTGATTTCAGAGCTTTTTTCGGAACAAGTA
TTCCCGCTATATCAGGGCGTCAGCCAACCTGCAGCAAAAGATCATTGCAT
GATCACTCTGGGATTGACTAGACATTCTCGTGTTCTTGAAGCATCAAGAG
ACCTACTCTGAACGATTCTTCCGCGATCACGTCATGCGTCTGCTCGTTGT
TTCTTCCACCAGATACGTCGACAATGAGTGTTGTAGCCGTTGCAGTGGGT
GGCGGGCTGGTCGTAGGGGCGATCGCGACCTTGATCCTGCTGTTCAAGAC
CGGCCGCCTAAAGCTTTGCAGGAATGGCAGCTCACGCGGCCCGTCACCGG
GGGTGGGCCCAATACCTGTTGCTGCCGGACCTTCTGCCATGGAGAGTGCC
AGGCGGGGCATGCAGATTCCGGCCGCAATCCAGTACCCTGAGGCTCTGCG
CGCATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5870:44..1300+

>mRNA_Ecto-sp13_S_contig5870.16376.1 ID=mRNA_Ecto-sp13_S_contig5870.16376.1|Name=mRNA_Ecto-sp13_S_contig5870.16376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5870:44..1300+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACCCCAACTCCTATGTCCCCTCCGGTCGCTACGCCCGAGCCTACCCCTG
CTCCCGTCGAGCCTACCCCCCCTACCCCCCTTCCCATCACGCCCACCCCA
GCTCCTGTATCGAACTCACTCCCGGTCCCATCACCCTCTCTAGTTCGATC
ACCACGCCTTCTCCTACACCTGGTGACCAAGCTAACGTGCTCACTGCCGC
TCCCATCGTCCTCTACGCGCCGGACGCTGTCTCCTCTCCCACCGCCACGT
CTTTCCCTACCCCTGCTCTCACCGAGCCTACTTCCCTTTTTACCCCATCA
CCACTGCCTGATGTCACGACTACTCCGGCCACGGTGGCTTCATCTGGGGG
AGGAGATACGTCGACAATGAGTGTTGTAGCCGTTGCAGTGGGTGGCGGGC
TGGTCGTAGGGGCGATCGCGACCTTGATCCTGCTGTTCAAGACCGGCCGC
CTAAAGCTTTGCAGGAATGGCAGCTCACGCGGCCCGTCACCGGGGGTGGG
CCCAATACCTGTTGCTGCCGGACCTTCTGCCATGGAGAGTGCCAGGCGGG
GCATGCAGATTCCGGCCGCAATCCAGTACCCTGAGGCTCTGCGCGCATAG
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