mRNA_Ecto-sp13_S_contig587.16373.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig587.16373.1
Unique NamemRNA_Ecto-sp13_S_contig587.16373.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16373.1 vs. uniprot
Match: D8LB10_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB10_ECTSI)

HSP 1 Score: 453 bits (1166), Expect = 4.160e-159
Identity = 223/239 (93.31%), Postives = 233/239 (97.49%), Query Frame = 1 
Query:    1 MPSFAQVTSSLLVLALAAQASGRKIQEKGGELLRNLAETDDEAAAEWTYRATGVVGEQPYGPDDWYLGYPDCAGTKQTPINIAADIMGTATMQEQAIAFFPSACNSTELVFQSDFAVWQVDFSGCTTAPYLQYQGETYNLLQFHIHSPSEHVLGGAEYAAEIHLVHLKENTDDGLLVVGIMFEVSEYGQNVELEPMWNVMDLEQDVAEEEFMAAAYSLLPSTPSFTTYSGSLTTPPCSE 717
            MPSFAQVTSSLLVLALAAQASGRKIQEKGG  LRNLAETDDEAAAEWTYRATGVVGE+PYGPDDWYLGYPDCAGTKQTPINIAAD+MGTATMQEQAIAFFPS CNSTELVF+SDFAVWQVDFSGCT APYLQYQGETYNLLQFHIHSPSEHVLGGAE+AAEIHLVHLK+NT DGLLVVGIMFEVS+YGQNVELEPMWNVMDL QD+AEE+FMAAAYSLLP+TPSFTTYSGSLTTPPC+E
Sbjct:    1 MPSFAQVTSSLLVLALAAQASGRKIQEKGGLRLRNLAETDDEAAAEWTYRATGVVGEEPYGPDDWYLGYPDCAGTKQTPINIAADVMGTATMQEQAIAFFPSECNSTELVFKSDFAVWQVDFSGCTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTPPCTE 239
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16373.1 vs. uniprot
Match: F6MHT6_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=F6MHT6_SACJA)

HSP 1 Score: 237 bits (604), Expect = 7.260e-74
Identity = 103/197 (52.28%), Postives = 145/197 (73.60%), Query Frame = 1 
Query:  127 AAAEWTYRATGVVGEQPYGPDDWYLGYPDCAGTKQTPINIAADIMGTATMQEQAIAFFPSACNSTELVFQSDFAVWQVDFSGCTTAPYLQYQGETYNLLQFHIHSPSEHVLGGAEYAAEIHLVHLKENTDDGLLVVGIMFEVSEYGQNVELEPMWNVMDLEQDVAEEEFMAAAYSLLPSTPSFTTYSGSLTTPPCSE 717
            AAAEWTYR T   G+QPYGP DW+ GYPDC    Q+PI++AAD+          + F+P+ C S EL+FQ+D  VW++ F GC+  P+++++GE YNLLQ HIHSPSEH++GG+E++AEIH VH+KE T+D LLVVG++F+ ++YG NVE+E +W+V+D+ +   +E F    Y ++PS P F+ Y GSLTTPPC+E
Sbjct:   38 AAAEWTYRRTSTNGQQPYGPSDWHKGYPDCGKKAQSPIDLAADLETVVKGSAYELKFYPNECKSDELLFQADERVWEILFGGCSDVPHVEFKGERYNLLQIHIHSPSEHMIGGSEHSAEIHWVHVKEGTEDQLLVVGVLFDTTDYGSNVEIEHLWDVLDIGETTTKEVFTTRIYDIMPSNPVFSHYMGSLTTPPCTE 234
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16373.1 vs. uniprot
Match: A0A872YNN4_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A872YNN4_SACJA)

HSP 1 Score: 184 bits (466), Expect = 4.740e-53
Identity = 89/206 (43.20%), Postives = 132/206 (64.08%), Query Frame = 1 
Query:  112 ETDDEAAAEWTYRATGVVGEQPYGPDDWYLGYPDCAGTKQTPINIAADIMGTATMQEQAIAFFPSACNSTELVFQSDFAVWQVDFSGCTTAPYLQYQGETYNLLQFHIHSPSEHVLGGAEYAAEIHLVHLKENTD---DGLLVVGIMFEVSEYGQNVELEPMWNVMDLEQDVAEEEFMAAAYSLLPSTPSFTTYSGSLTTPPCSEV 720
            E ++ +  +WTYR     GE+PY P DW +GYPDC G  Q+PIN++A++       E  +  F + C S EL F+++  VW++DFS CT+   L + G  Y+LLQ HIHSPSEH++ G+ + AEIHLVH ++++D     LLV+G+  +  E+G NV LEP+W+V+      A+   +   Y L+PS  +++ Y GSLTTPPCSE+
Sbjct:   40 EPEESSFPDWTYRRASHEGERPYSPSDWEIGYPDCGGDSQSPINLSANVGTLVEATEFNLELFGAECASKELDFEANGHVWEIDFSECTSTSNLSFDGGKYSLLQMHIHSPSEHMVAGSLHDAEIHLVHSRDDSDGTESELLVIGVFLDAKEHGWNVALEPLWDVLG---SGAKPRGVINPYELIPSDMAYSHYMGSLTTPPCSEI 242
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16373.1 vs. uniprot
Match: A0A7S3XQ34_HETAK (Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ34_HETAK)

HSP 1 Score: 124 bits (312), Expect = 2.240e-30
Identity = 72/188 (38.30%), Postives = 109/188 (57.98%), Query Frame = 1 
Query:  184 PDDWYLGYPDCAGTKQTPINI-----AADIMGTATMQEQAIAFFPSACNSTELVFQSDFAVWQVDFSGCTTAPYLQYQGETYNLLQFHIHSPSEHVLGGAEYAAEIHLVHLKENTDDGLLVVGIMFEVSEYGQNVELEPMWNVM-----DLEQDVAEEEFMAAAYSLLPSTPSFTTYSGSLTTPPCSE 717
            P++W     DCAGT Q+PIN+     ++D+ G    + +      S+CN+  L+   ++  W+VD + C  A Y  ++G  Y L+QFH HSPSE+ +GG  + AE+HLVH   + +  LLV+G+MF+V +YG N      WN       D  + V+ E  +     +LP+TPS+  ++GSLTTPPCSE
Sbjct:   95 PENWDSVNDDCAGTSQSPINVVQASPSSDLSGLQLTKAK------SSCNAVYLI--DNYHTWKVDMTSCDDAYYATWKGTDYYLIQFHFHSPSENTIGGGYFDAEMHLVHA--SAEGELLVIGVMFDVVDYGGNHFFSQFWNNTWSDDPDWYRVVSLESNLDPYTEILPATPSYYHWNGSLTTPPCSE 272
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16373.1 vs. uniprot
Match: A0A7S4D4V5_HETAK (Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4V5_HETAK)

HSP 1 Score: 116 bits (291), Expect = 9.990e-28
Identity = 69/189 (36.51%), Postives = 103/189 (54.50%), Query Frame = 1 
Query:  166 GEQPYGPDDWYLGYPDCAGTKQTPINIAADIMGTATMQEQAIAFFPSACNSTELVFQSDFAVWQVDFSGCTTAPYLQYQGETYNLLQFHIHSPSEHVLGGAEYAAEIHLVHLKENTDDGLLVVGIMFEVSEYGQNVELEPMWN-----VMDLEQDVAEEEFMAAAYSLLPSTPSFTTYSGSLTTPPCSE 717
            GE+   P++WY    DCAG  Q+PIN+      T T+ +  +      C+   LV   ++  W+VD S C  +    +    Y L+QFH HSPSE+ +GG  + AE+HLVH   + D  LLV+G+MF+V +YG N   +  WN     V   + +V+    +     +LP+  S+  ++GSLTTPPCSE
Sbjct:   47 GEEACSPENWYAYAEDCAGESQSPINVVQASPST-TLSQLVLNKNNEDCDLLYLV--DNYHTWKVDMSECDGSYTTTWNDVDYELVQFHFHSPSENTIGGGYFDAEMHLVHA--DADSNLLVIGVMFDVVDYGGNNFFKEFWNNTWSDVSTGDSEVSLSSTLDPYTEILPADLSYYHWNGSLTTPPCSE 230
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16373.1 vs. uniprot
Match: H6WB77_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB77_VAULI)

HSP 1 Score: 117 bits (292), Expect = 1.190e-27
Identity = 81/204 (39.71%), Postives = 102/204 (50.00%), Query Frame = 1 
Query:  193 WYLGYPDCAGTKQTPINIAADIMGT-ATMQEQ--AIAFFPSACNSTELVFQSDFAVWQVDFSG-CTTAPYLQYQGETYNLLQFHIHSPSEHVLGGAEYAAEIHLVHLKENTDDGLLVVGIMFE-VSEYGQNVELEPMWNVMDL---EQDVAEE---------------EFMAAA-----YSLLPSTPSFTTYSGSLTTPPCSEV 720
            W   YPDC G +Q+PINIA DI+ T  T+     A  F   AC   +L +++D   W V F G C T P +   G  +NLLQFH+HS SEHV+GG  Y AEIH VH        L VVG+M    S+   N+E    W  M     +Q  A E                 M+A      YS+LP+  ++  Y GSLTTPPCSE 
Sbjct:    2 WGALYPDCLGVRQSPINIARDIVTTDCTLAPVTGAFVFDMGACMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNVGNLEFAKYWEHMAYVSGKQQYASEIVEKSTATMVSATASSSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSET 205
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16373.1 vs. uniprot
Match: H6WB76_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB76_VAULI)

HSP 1 Score: 117 bits (293), Expect = 4.320e-27
Identity = 92/268 (34.33%), Postives = 122/268 (45.52%), Query Frame = 1 
Query:   31 LLVLALAAQASGRKIQEKGGELLRNLAETD----DEAAAEWTYRATGVVGEQ-PYGPDDWYLGYPDCAGTKQTPINIAADIMGT-ATMQEQ--AIAFFPSACNSTELVFQSDFAVWQVDFSG-CTTAPYLQYQGETYNLLQFHIHSPSEHVLGGAEYAAEIHLVHLKENTDDGLLVVGIMF----------EVSEYGQNV--------------ELEPMWNVMDLEQDVAEEEFMAAA-----YSLLPSTPSFTTYSGSLTTPPCSEV 720
            L  +A AA  S R +      L R L  +D      A  +W+Y       E     PD W   YPDC G +Q+PINIA DI+ T  T+     A  F    C   +L +++D   W V F G C T P +   G  +NLLQFH+HS SEHV+GG  Y AEIH VH        L VVG+M           E ++Y +++              E +           +A    M+A      YS+LP+  ++  Y GSLTTPPCSE 
Sbjct:   19 LCFVAGAALFSFRSVDSSSDALNRALMTSDCSCKPTAEFDWSYNYECNYEEHGQVAPDMWGYLYPDCLGVRQSPINIARDIVTTDCTLAPVTGAFVFDMGMCMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNIGNLEFTKYAEHMAYVSGKQKYASEIMETDATMAPAATPSSMASSTSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSET 286
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16373.1 vs. uniprot
Match: Q9SMD6_9PHAE (Carbonic anhydrase alpha type (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 8.350e-24
Identity = 44/88 (50.00%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:  454 VLGGAEYAAEIHLVHLKENTDDGLLVVGIMFEVSEYGQNVELEPMWNVMDLEQDVAEEEFMAAAYSLLPSTPSFTTYSGSLTTPPCSE 717
            ++GG+E+ AEIH VH+K  TDD LLV+G++F+ ++YG NVE+E +W+V+D+ +   +E F+   Y ++PS P F+ Y GSLTTPPC+E
Sbjct:    1 MIGGSEHEAEIHWVHVKAGTDDQLLVIGVLFDTTQYGSNVEIEHLWDVLDIGKPTTDEVFVTRVYDIMPSNPVFSHYMGSLTTPPCTE 88
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16373.1 vs. uniprot
Match: A0A7S3XPW5_HETAK (Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPW5_HETAK)

HSP 1 Score: 106 bits (265), Expect = 1.080e-23
Identity = 63/183 (34.43%), Postives = 97/183 (53.01%), Query Frame = 1 
Query:  184 PDDWYLGYPDCAGTKQTPINIAADIMGTATMQEQAIAFFPSACNSTELVFQSDFAVWQVDFSGCTTAPYLQYQGETYNLLQFHIHSPSEHVLGGAEYAAEIHLVHLKENTDDGLLVVGIMFEVSEYGQNVELEPMWN-----VMDLEQDVAEEEFMAAAYSLLPSTPSFTTYSGSLTTPPCSE 717
            P++W     DC G  Q+PIN+   +M   +     +    +  +   L    ++  W+VD S C  +    + G  Y L+QFH HSPSE+ +GG  + AE+HLVH   + D  LLV+G+MF+V +YG N   +  WN     V   + +V+    +     +LP+  S+  ++GSLTTPPCSE
Sbjct:   79 PENWGEVNRDCEGENQSPINV---VMAQKSKSLSQLQLNKNNEDCDLLYLVDNYHTWKVDMSECDGSYTTTWNGVDYELVQFHFHSPSENTIGGGYFDAEMHLVHA--DADSNLLVIGVMFDVVDYGGNNFFKEFWNNTWSDVSTGDSEVSLSSTLDPYTEILPADLSYYHWNGSLTTPPCSE 256
[Close]
BLAST of mRNA_Ecto-sp13_S_contig587.16373.1 vs. uniprot
Match: A0A5D6XT77_9STRA (Carbonic anhydrase (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XT77_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 6.830e-21
Identity = 71/193 (36.79%), Postives = 98/193 (50.78%), Query Frame = 1 
Query:  181 GPDDWYLGYPDCAGTKQTPINIA------ADIMGTATMQEQAIAFFPSACNSTELVFQSDFAVWQV-DFSGCTTAPYLQYQGETYNLLQFHIHSPSEHVLGGAEYAAEIHLVHLKENTDDGLLVVGIMFEVSE-YGQNVELEPMWNVMD--LEQDVAEEEFMAAAYSL---LPSTPSFTTYSGSLTTPPCSEV 720
            GP  W    P C G  Q+P+N+        ++ GT  +    ++      N  +LV   D   W++ D + C  A  LQ  G+TY+LLQFH+H+PSEH + G  Y  EIH VH KE+  DGLLVVG++    E  G+   ++ + N MD  +E      +       L   L S      YSGSLTTPPCSE+
Sbjct:   38 GPSKWVTVAPACGGKSQSPVNLVYHSNSVVNLWGTTDVAPIKLSGSCKGFNLKQLV---DVFKWELADATACKLALQLQ-NGKTYSLLQFHVHTPSEHTIEGHNYNGEIHFVH-KEDGGDGLLVVGLLLNAEENVGEYNWVQNILNTMDKGVEGSTVAVDLGVNYVDLINHLVSRSHLFNYSGSLTTPPCSEI 225
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig587.16373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB10_ECTSI4.160e-15993.31Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
F6MHT6_SACJA7.260e-7452.28Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
A0A872YNN4_SACJA4.740e-5343.20Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
A0A7S3XQ34_HETAK2.240e-3038.30Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma ... [more]
A0A7S4D4V5_HETAK9.990e-2836.51Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma ... [more]
H6WB77_VAULI1.190e-2739.71Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
H6WB76_VAULI4.320e-2734.33Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
Q9SMD6_9PHAE8.350e-2450.00Carbonic anhydrase alpha type (Fragment) n=1 Tax=L... [more]
A0A7S3XPW5_HETAK1.080e-2334.43Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma ... [more]
A0A5D6XT77_9STRA6.830e-2136.79Carbonic anhydrase (Fragment) n=1 Tax=Pythium bras... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig587contigEcto-sp13_S_contig587:15774..21791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score459.1
Seed ortholog evalue1.4e-126
Seed eggNOG ortholog2880.D8LB10
Model size866
KEGG rclassRC02807
KEGG koko:K01672,ko:K01674,ko:K04413
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005623,GO:0042597,GO:0044464
Exons10
EggNOG free text desc.carbonate dehydratase activity
EggNOG OGsCOG3338@1,KOG0382@2759
Ec32 ortholog descriptioncarbonic anhydrase alpha type
Ec32 orthologEc-27_005680.1
EC2.7.11.1,4.2.1.1
Cds size798
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig587.16373.1prot_Ecto-sp13_S_contig587.16373.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig587 15842..21791 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463815.9154396-UTR-Ecto-sp13_S_contig587:15773..158411681463815.9154396-UTR-Ecto-sp13_S_contig587:15773..15841Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig587 15774..15841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463815.92893-CDS-Ecto-sp13_S_contig587:15841..159181681463815.92893-CDS-Ecto-sp13_S_contig587:15841..15918Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig587 15842..15918 -
1681463815.9394789-CDS-Ecto-sp13_S_contig587:16610..167551681463815.9394789-CDS-Ecto-sp13_S_contig587:16610..16755Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig587 16611..16755 -
1681463815.9502788-CDS-Ecto-sp13_S_contig587:16992..171121681463815.9502788-CDS-Ecto-sp13_S_contig587:16992..17112Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig587 16993..17112 -
1681463815.9610713-CDS-Ecto-sp13_S_contig587:17672..177711681463815.9610713-CDS-Ecto-sp13_S_contig587:17672..17771Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig587 17673..17771 -
1681463815.9809785-CDS-Ecto-sp13_S_contig587:18047..181311681463815.9809785-CDS-Ecto-sp13_S_contig587:18047..18131Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig587 18048..18131 -
1681463815.9948423-CDS-Ecto-sp13_S_contig587:18691..187761681463815.9948423-CDS-Ecto-sp13_S_contig587:18691..18776Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig587 18692..18776 -
1681463816.0053449-CDS-Ecto-sp13_S_contig587:19302..193691681463816.0053449-CDS-Ecto-sp13_S_contig587:19302..19369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig587 19303..19369 -
1681463816.0152476-CDS-Ecto-sp13_S_contig587:19980..200051681463816.0152476-CDS-Ecto-sp13_S_contig587:19980..20005Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig587 19981..20005 -
1681463816.0268066-CDS-Ecto-sp13_S_contig587:21096..211321681463816.0268066-CDS-Ecto-sp13_S_contig587:21096..21132Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig587 21097..21132 -
1681463816.0390568-CDS-Ecto-sp13_S_contig587:21731..217911681463816.0390568-CDS-Ecto-sp13_S_contig587:21731..21791Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig587 21732..21791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig587.16373.1

>prot_Ecto-sp13_S_contig587.16373.1 ID=prot_Ecto-sp13_S_contig587.16373.1|Name=mRNA_Ecto-sp13_S_contig587.16373.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=266bp
MPSFAQVTSSLLVLALAAQASGRKIQEKGGELLRNLAETDDEAAAEWTYR
ATGVVGEQPYGPDDWYLGYPDCAGTKQTPINIAADIMGTATMQEQAIAFF
PSACNSTELVFQSDFAVWQVDFSGCTTAPYLQYQGETYNLLQFHIHSPSE
HVLGGAEYAAEIHLVHLKENTDDGLLVVGIMFEVSEYGQNVELEPMWNVM
DLEQDVAEEEFMAAAYSLLPSTPSFTTYSGSLTTPPCSEVPQRSRRFVRD
PLGSSPIERVFRRTL*
back to top

mRNA from alignment at Ecto-sp13_S_contig587:15774..21791-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig587.16373.1 ID=mRNA_Ecto-sp13_S_contig587.16373.1|Name=mRNA_Ecto-sp13_S_contig587.16373.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6018bp|location=Sequence derived from alignment at Ecto-sp13_S_contig587:15774..21791- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTTCCTTCGCGCAAGTGACTTCGTCTTTGCTGGTGCTGGCCCTTGC
AGCACAGGCGGTGAGTGACGAGATGGTGACCTGGTGCTCTGTGGTACAGA
CCCGCACGTGTATCCCTGGCCCGCGAACATGTTGAGGCATGCGTATGCAA
TGGTGTCGGTACGTGTCTCGGAGCTCCAGAGATGCTGTGGTCGCGTGTGT
CAGCTCGTGTACGGGTAGCGGTGAAGGAGCACTACCTCTTAGGGGTAGTG
GACACGGCGAGGTTCTCGCGCTCTAAAGTCGTCGGCTACTCAGGTTGGAC
CCGACACCTACACGTATCTAGCCATCGTTGTAGCTCAAATATCAACGTAT
CCCAGCGGCCCCAACGTTGTTGTCGCGGACTGCCGGACACCTCACGACCT
TGTTTCTTGCCGCCTTCCTTCCCAGTGACTGCCCTGCCACGCATATCTGG
ATCCGAGCCGTGGTGTCTACGCCTTGCCCTCGCCCAATCCTCCAACCGTG
CCCCACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTT
TCATGCATGCCGACAATACGCATGTACGCGCATGCTTGATCCCGTTCATG
TTCTCCGGATCCGGTCATTCATCTTCACGCCACGATACCCATTGCCACGC
ATCATTCAGAGCGGCCGCAAGATCCAAGAGAAGGGAGGTGAGCTCGTGTG
CGGCAGTCGTCGTTCCTACGACGGCAGACGAAAGCGTGATTCGGTTGATT
TTTTATCTTGCGCGGCAACCCCGAGAAGTACACTTTCCCGAGGTCCCTCT
GGTTGCAGCCCAAGTTGGTCTGTCCGTAGAAAATTGGTCACGTATCCGCC
CGATGAGGTCAACACGGATACACGATGGCCCACGCTCTGCTCCTTCTCGC
TGCAGGTGCCCTACGCACGGCATCCTCGTACGTACGAGCGAGAGCTGCTA
AGTTGAGCAGGTCTTACGTATGCACGTGCTCCGAGGCATACGTGGGCTGC
GGGATCGTTTCTTTATTCAATTCAGGCCCCTTGATGATTCGTATCCGAAT
GCATACGTGGGACGGCGGTTCATACGCATTTTTTTTTTTATTCAACACCT
ATACGCCTGCGTGCAGGGATAAGATCCGTATACTCCTCCCTAACCTTTCG
GCTCCTGCTTTCCTGTCCCCCACCTCTGCGCGTACGGCGCGTTCCGGACT
CCTCGCAAAATCGGTGTTTTCTCTGCTTGCTGTGGTGGCGACTCTACTGA
AGGGCTCCGGGTAAGAGGAGATGAAATTTCCAAGACGTTCTCACAGGGAT
AACACACCAGCTCGAGTATTTGTTATTCAGCTCTAGTATGTAGACGCATG
TATGCAAAAGCGAAAACAAGTGTAAGTGGTACAACAGACGAGGCTTTTGA
TGTGCCCACCCCTCGCGTTTTCTATCATGTTGAATGCGCCGTCTTGTTTA
GCGCGCCCTCCTCTGTGTGGTAGAAAACAACCAAATAGCTTTCCCATTCA
TGCATCCGCGGTTGGTTTTTTCTCGCCCGCACGTTCTCGCTCCGACCTGC
TGCGGCCGCGGCTGCCACTCGTTCAAGACTAGTGGGACTAACTTTCGAAA
CGCCGTTTTTCCCGCTTGGTCCCGTGTTCCGCTCATGATTTTCTCTGGGG
GGGTCTGGAACTGGGACCGAACGCTCGCTGCGAATCCGGAACGACATTTT
GTTTTCCCTGGCCGGCAAACGCTTGCCTTGGCATGTACTCTACGACCGAC
GCCTGGATCAAACCGTTTCCTGTTCCGTCGTCGTAGCTACGCAACCTCGC
CGAGACCGACGGTAAGGCTAACGAGCGCCGCAACGAGCCGATTGGTCGCT
GCGTGTACGCGTAGGACCTATCGATACAACCACAGAAAGCCTGCCCCTTC
ATATGCGGACGAGCACGCGCTTCCCTCTCGACGAGCAAGCAGTGTTGCCC
TTCCAGAGTTGGTTTTACTGATGTATCTTGTTGGCAGCAGTTGGTGCTTT
GGTTGTTCCTGTTCTTGTTGGTTCTTTGGGGTTGACAATTTTTGTCATGT
TGGTTTTTCGCAGGTTGTTGTTTTCGTTCTTGTTTCTTGGGTCTCCCGTG
GTGTGTGCTTCGTTTTTGTGGCTCTGGGCATCGCAAAATTGCTCGCCGTT
GTTTCCCTGCGGACATTCGTTTGTTGTGAGAGTGTCGCGGGGTGATGGCG
GCTTACGACGTTGTTTCTCGAAAGCTTGTACCGTGGGGCGTGCATCTTGC
GTCTGCAGAGTTGTTTTCGATAGTACAAGGTATTCGCACTGTCCTCTGAT
GTGCGGGCCACCTCCGCTGGATCCGTTCACATGCGAGCATAAACTAGAAG
TAATAACCGTGACCCTGTTCTTGCCGTACCGTTTTCTCGTGCGTTGCATG
AACCTTCCCTGCACGCCATCAGACGAAGCTGCCGCGGAATGGACTTACCG
CGCGACGGGAGTCGTCGGGGAACAGCCGTACGGCCCAGAGTAAGTAACGT
TTTCTGTCGATCGATGTCCGTATGCTAGATTGTTGGTGATTGTTGCTTTC
CTCCGGTGCGATTTTTCATGTTGTCCTGCATTGTTGGTTGAGTGTCGCTT
TCCTCGGACAGGCGTCCTGCGCATGAGCTGGAGATGTATCCCTTCCGTGC
GAAGTGTTCAGGCCTCTCTCATGCATGGGGCTTCACGCTTCGCTGAACTC
AAGAGACCTCAGGTTGCACCTCGGTACGACGGCGAGGATGAGCTCTAAGA
ATCTGTTCCCACATTTGTCGTGCTCTTGGTTTGTGCGTTTGACTGCAGAT
GGTCACGTTATGTTTATGCTGCTTTTGTGATGCACTACGCACTAGTCGTA
AACAGCAGTACACCCTTGGCGGAGATTGAGCGCCTGTGTTAAGTGCTTTC
CTCGCCGGCCCCGTTTCCACAACAAATTGTTCCGTGTTCCGTCTCGATTT
TTTCTTTCACCTACCCCATGTGATCCCCTTTCGTGTTCTTCCTACTCCGG
TGAACCCACGTGCAGTGACTGGTACTTGGGATACCCCGACTGCGCAGGGA
CCAAGCAGACGCCAATCAACATCGCCGCAGACATCATGGGCACGGCTACC
GTAAGTGGTGTTGAATTGCATGCAAAGAATGTTAGGAACGACAGTGCTGA
TGAAGGCGGGCAGCATGTCGATGTTGAGCACGCAAAACGAAGAAATGCAC
AGGTGTATGGCGCGGTCAACCTGATGTTTGTCGCGTGCTCGATCATGACC
AGACATTGCGTGGAGCAGGTTCTAGGAAGCGGGCGTCCAAATTGTAACAG
GCCATGCAGAGATAATGTATGTAGCTGAAAAACCTGCTCGTACAGGTTGA
ATGGAACCGGCGTGGACGGGTCATGTACCTCGCCATGTATGTACCACTAA
CACCCACGAATAGTCGCTTGTTCCGTTCTACATCTTCTAATCCTTGGGAG
AACATCTCGTCTCCATGCGAAGCCGGGTCTGGGTGTGCAATGAAATCAAA
ATCCTGAAAGTGACGCAAAAGCATCATCGCGTTTGGGAGGTCCCCGCGCG
GGGCCGCGGATACTCGGTTCCGTCGCATCTCCGGAGTCATTCGTACCATC
CGTGCGTTAACTCTTGGAAGAACCGACCGACTCCTCTGTGCCGGCCCCTC
GGAATTACAGATGCAGGAGCAGGCCATCGCGTTCTTCCCTAGCGCGTGCA
ACTCGACCGAGTTGGTCTTCCAGTCGGACTTCGCCGTGTGGCAGGTTAGA
AGAGGGAGGGGGGATGATGTCGTTGTGTACCTTCGGCACGTTTCACTAGA
TCCGGGATTAAGCTATTGCCATCTAGTGTGCTCTCACAGCGAACACGTCT
AGTCAGGAAACCCTCGCTGCATGGAATCTTGTTTGAATAATTTAGTATTT
TGGAAACGTTTGTTGTGTTGTTTTTTTTAAAGCAATTTCAGCCATTTGCT
GTTCTGCTACAACTTCCAAAAATATATGTTCCTTCATGTTGGCTTCTTGG
TCTTCCTTGTGTTTTTCCAGGTTGACTTCTCCGGGTGCACCACTGCGCCC
TACCTCCAGTACCAGGGCGAGACCTACAACCTTCTCCAGTTCCACATCCA
CTCGCCCTCCGAGCACGTGGTGAGTGCTGACCCGGCGTTTCTCCTCTTGC
CGTCGAATCGCGCACCGGAGCCTGATGGATGGCATACTCTTGAAGCACCC
GGGGAGAGATGCGCTTGCCCAGCAGCTGCAGCACGCCCTTGTTTCGCAGA
CATCCGTGTATTGACAACTACACGCAGCTTGCAGTACGCCCTTGACTCGG
AGGCGTGGTGTTTTAAAAACTACATCTAGCTGCCGTTCGCCCCTGATTCG
CAGGCGTAGTGTTTCAAAGGACTTCACCGCACCATCGAAATGTGGCATCT
TCTTTGCTTGCCCTCTTGGCTTTCGTGAAAGCCCGCGTTCCGCCTGTGAG
ACTACTGTGTCCACGTGCTTTTGGGCAAAAAACTTCAGACCGCGGTTGTA
GGAGTACTCAAAGCGAACCCTCTCACGTGATGGCGATTTCGCGCCGGTTC
TTTCGGCGACGACCGAATCGAGAGACGGCGTTTCGTGACGTGATGACCGT
TCCGTCTGATAATGTGACATCAGCGTCGGCTAAGTGTGTTGTTGCGTTTT
CGTCCTTTCGCTCGCTTCTGTCCACTCAGCTCGGTGGCGCAGAATACGCG
GCGGAGATCCACCTGGTTCACCTCAAGGAGAACACTGACGACGGGTTGCT
CGTAGTGGGGATCATGTTCGAAGTCAGCGAGTACGGCCAGAACGTTGAGG
TGAGACCCACAGAGCAAGACACGGGGCGCAGCGGATAGATATCGGTGGTG
CGCTGCTTGACAACCCAGTGGAGATGCTTCGGATTTTGTTGCTTTGTATT
TTTCGGGGATTGCCAGTTATATCATATCCACCTCTAGGAGCTTCCTAAAC
CAGCCGTTCCCTTCGCGCGTCCGTCCATAGCGTGATCGGTCACTGATACC
GGGCATCCTCCCCCGCCCCTTTGCACCCGACGACAGCTGGAGCCCATGTG
GAACGTGATGGACTTGGAGCAGGACGTCGCGGAGGAGGAGTTCATGGCCG
CGGCGTACTCGCTCTTGCCCTCTACCCCTAGCTTCACCACGTACTCCGGG
TCGCTCACCACCCCCCCGTGCTCCGAGGTGCGTGTGGCCATTTGCTTGCG
AAGCCTACTTTTAGCCTGCGAGCGCGGCTTGTGGTGTTGCCTCTGTGATG
TATTTGTTCGGTAGATTTCTGGGGCACCACGGTAGGATGGTGTCGGGTAT
ACCCTCCTGCCATCGCTCGTGCGTGTATTGAGGAGCTGGCTACGGTACAT
CCCTTGCCACGAGTTAGATGACACCACGACACGAGCCATGCGATGAAGGA
AAGTGACACGCGTTTTTTTTTTTCAATAAAATCACTCGGGTGCATCCAAC
CCAAACGCCCGTGTTCGTCGTGGCAGGGCGTGAGGTGGATCGTCATGAAC
GAGCCCAACTACATGAGCACGATGCAGCTGGACAACTACCGCCGCGCGGT
TGCGTTGTACGACGGCTCCAAGGTGCGATGCCGCTGTTGTTTTTTGTCTG
ATGTTGTTGATGTTATAAATGGTTGAGCGTATAGGCAATAATAAACTCAA
ACGAAGCCGAGTCCCAGCCGTTTTTTCTCCCACCCACTGCAAGGGTTGAT
GGAACATTGTGATTGTACTTCAAACCGGTGGTCGTTCTAGAGCTAAGCTG
TCGGTCACGAGGAAAAACATCGCGAAATGGAGAGAACAACCGTCGTTTTA
ACACGCCCTCCCTCTCCTGTGCCGTTACCTTTAGGTGAGCGAGACGGGCG
CCACTAACCGCCCCATCCAGGAGCTCAACGGTCGCGACGTTTTGTACGTG
ACCCCTTAGGCTCGTCGCCGATCGAGCGGGTGTTTCGTCGCACCTTGTAG
TTATTGACGTATTGGCGGAGACCACACCTTCCACCCCTTGCAGCAGGGAC
CCTGAGCGGGAAGGAAAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig587:15774..21791-

>mRNA_Ecto-sp13_S_contig587.16373.1 ID=mRNA_Ecto-sp13_S_contig587.16373.1|Name=mRNA_Ecto-sp13_S_contig587.16373.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp13_S_contig587:15774..21791- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTTCCTTCGCGCAAGTGACTTCGTCTTTGCTGGTGCTGGCCCTTGC
AGCACAGGCGAGCGGCCGCAAGATCCAAGAGAAGGGAGGTGAGCTCCTAC
GCAACCTCGCCGAGACCGACGACGAAGCTGCCGCGGAATGGACTTACCGC
GCGACGGGAGTCGTCGGGGAACAGCCGTACGGCCCAGATGACTGGTACTT
GGGATACCCCGACTGCGCAGGGACCAAGCAGACGCCAATCAACATCGCCG
CAGACATCATGGGCACGGCTACCATGCAGGAGCAGGCCATCGCGTTCTTC
CCTAGCGCGTGCAACTCGACCGAGTTGGTCTTCCAGTCGGACTTCGCCGT
GTGGCAGGTTGACTTCTCCGGGTGCACCACTGCGCCCTACCTCCAGTACC
AGGGCGAGACCTACAACCTTCTCCAGTTCCACATCCACTCGCCCTCCGAG
CACGTGCTCGGTGGCGCAGAATACGCGGCGGAGATCCACCTGGTTCACCT
CAAGGAGAACACTGACGACGGGTTGCTCGTAGTGGGGATCATGTTCGAAG
TCAGCGAGTACGGCCAGAACGTTGAGCTGGAGCCCATGTGGAACGTGATG
GACTTGGAGCAGGACGTCGCGGAGGAGGAGTTCATGGCCGCGGCGTACTC
GCTCTTGCCCTCTACCCCTAGCTTCACCACGTACTCCGGGTCGCTCACCA
CCCCCCCGTGCTCCGAGGTGCCTCAACGGTCGCGACGTTTTGTACGTGAC
CCCTTAGGCTCGTCGCCGATCGAGCGGGTGTTTCGTCGCACCTTGTAG
back to top