prot_Ecto-sp13_S_contig587.16371.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig587.16371.1
Unique Nameprot_Ecto-sp13_S_contig587.16371.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length92
Homology
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BLAST of mRNA_Ecto-sp13_S_contig587.16371.1 vs. uniprot
Match: D8LB11_ECTSI (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB11_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.060e-26
Identity = 83/90 (92.22%), Postives = 84/90 (93.33%), Query Frame = 0 
Query:    1 MLKYAVARAVRSPSGWSGASSARARVAADGRPIGRKASXXXXXXXXXXXXXXXXXXXXXSRSRGAYKAFFFAGTGFAAGAAYAHLRPDKA 90
            ML Y V RAVRSPSGWSG SSARARVAA GRPIGRKASXXXXXXXXXXXXXXXXXXXXXSR RGAYKAFFFAGTGFAAGAA+AHLRPDKA
Sbjct:    1 MLNYVVGRAVRSPSGWSGVSSARARVAAGGRPIGRKASXXXXXXXXXXXXXXXXXXXXXSRGRGAYKAFFFAGTGFAAGAAFAHLRPDKA 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig587.16371.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB11_ECTSI1.060e-2692.22Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 86..91
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 68..85
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..67
NoneNo IPR availableTMHMMTMhelixcoord: 68..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig587contigEcto-sp13_S_contig587:5043..7326 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig587.16371.1mRNA_Ecto-sp13_S_contig587.16371.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig587 5043..7326 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig587.16371.1 ID=prot_Ecto-sp13_S_contig587.16371.1|Name=mRNA_Ecto-sp13_S_contig587.16371.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
MLKYAVARAVRSPSGWSGASSARARVAADGRPIGRKASSSTSSTTPPAAG
AAPSDGGGGSRSRGAYKAFFFAGTGFAAGAAYAHLRPDKAS*
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