mRNA_Ecto-sp13_S_contig587.16371.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig587.16371.1
Unique NamemRNA_Ecto-sp13_S_contig587.16371.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig587.16371.1 vs. uniprot
Match: D8LB11_ECTSI (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB11_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.060e-26
Identity = 83/90 (92.22%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:    1 MLKYAVARAVRSPSGWSGASSARARVAADGRPIGRKASXXXXXXXXXXXXXXXXXXXXXSRSRGAYKAFFFAGTGFAAGAAYAHLRPDKA 270
            ML Y V RAVRSPSGWSG SSARARVAA GRPIGRKASXXXXXXXXXXXXXXXXXXXXXSR RGAYKAFFFAGTGFAAGAA+AHLRPDKA
Sbjct:    1 MLNYVVGRAVRSPSGWSGVSSARARVAAGGRPIGRKASXXXXXXXXXXXXXXXXXXXXXSRGRGAYKAFFFAGTGFAAGAAFAHLRPDKA 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig587.16371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB11_ECTSI1.060e-2692.22Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig587contigEcto-sp13_S_contig587:5043..7326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score112.1
Seed ortholog evalue1.4e-22
Seed eggNOG ortholog2880.D8LB11
Preferred nameDHODH
Model size276
KEGG rclassRC00051
KEGG koko:K00254
KEGG ReactionR01868
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00051
Hectar predicted targeting categorymitochondrion
GOsGO:0000003,GO:0000166,GO:0001101,GO:0003674,GO:0003824,GO:0004152,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006213,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006950,GO:0007275,GO:0007565,GO:0007584,GO:0007589,GO:0007595,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009163,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009410,GO:0009605,GO:0009987,GO:0009991,GO:0010033,GO:0010181,GO:0010243,GO:0010821,GO:0010941,GO:0010942,GO:0014070,GO:0014074,GO:0016020,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0019866,GO:0022414,GO:0022603,GO:0030879,GO:0031000,GO:0031090,GO:0031667,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0033043,GO:0034404,GO:0034641,GO:0034654,GO:0036094,GO:0036270,GO:0036477,GO:0042221,GO:0042493,GO:0042594,GO:0042981,GO:0043025,GO:0043065,GO:0043067,GO:0043068,GO:0043167,GO:0043168,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043279,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0046112,GO:0046134,GO:0046390,GO:0046483,GO:0046903,GO:0048037,GO:0048038,GO:0048039,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048732,GO:0048856,GO:0050662,GO:0050789,GO:0050793,GO:0050794,GO:0050878,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051704,GO:0055086,GO:0055114,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0072527,GO:0072528,GO:0090140,GO:0090407,GO:0097159,GO:0097367,GO:0097458,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1901698,GO:1901700,GO:1903576
Exons2
EggNOG free text desc.dihydroorotate dehydrogenase activity
EggNOG OGsCOG0167@1,KOG1436@2759
EC1.3.5.2
Cds size276
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463815.7231472-CDS-Ecto-sp13_S_contig587:5042..52431681463815.7231472-CDS-Ecto-sp13_S_contig587:5042..5243Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig587 5043..5243 +
1681463815.7509942-CDS-Ecto-sp13_S_contig587:7251..73261681463815.7509942-CDS-Ecto-sp13_S_contig587:7251..7326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig587 7252..7326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig587.16371.1prot_Ecto-sp13_S_contig587.16371.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig587 5043..7326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig587.16371.1

>prot_Ecto-sp13_S_contig587.16371.1 ID=prot_Ecto-sp13_S_contig587.16371.1|Name=mRNA_Ecto-sp13_S_contig587.16371.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
MLKYAVARAVRSPSGWSGASSARARVAADGRPIGRKASSSTSSTTPPAAG
AAPSDGGGGSRSRGAYKAFFFAGTGFAAGAAYAHLRPDKAS*
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mRNA from alignment at Ecto-sp13_S_contig587:5043..7326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig587.16371.1 ID=mRNA_Ecto-sp13_S_contig587.16371.1|Name=mRNA_Ecto-sp13_S_contig587.16371.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2284bp|location=Sequence derived from alignment at Ecto-sp13_S_contig587:5043..7326+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGAAGTATGCGGTGGCAAGGGCCGTTCGTTCGCCGTCCGGCTGGTC
CGGGGCGTCTTCGGCGAGGGCGCGAGTTGCTGCGGACGGACGGCCGATCG
GCAGAAAAGCAAGCTCAAGCACCAGCTCCACCACACCACCTGCAGCAGGA
GCTGCGCCCTCTGATGGCGGGGGAGGATCTCGGAGCAGAGGTGCTTACAA
GGTGACAATAAGAGGAGCATAAGCTTGATGATGTTTGGAGCAGGGGCCAG
TGAACCGGGCGCGTAGCCAGAGTTGAAAGTTACACATGTTGCTCCGTACA
CACGACGTGCCTGGTGCTGTTGTTGCGGAGTAATGTGCTGGGAAGCGAGG
TTATTATGGAAAAGCAGCTGGCCTGCTGGTAGCGTGTAGAGACGTACCAG
CAGAAGAGGCGCAGCTAGGACGGGCGTCGACCAATACACGCATGACGGCT
CCCTGCCGGGTCTTGGTTTTCTGAAAAGATGTTGAACTTGCCGCAACTAC
TGTATCGATGCTTGGTAGAATAGTAATGTGCGTCACCATCTCTTTCATGT
GCAGGTCGAAGAACATCGGAGGCAACCGTGTGTGTGCCTGCGGTTAAAGT
GTTCGGCACGATGTCCACCTCTGCTCCGGTGTGATTGTTTCCGTGCATCA
TGGAGACGTACGCGTTTGCATAAAAGTTTTCTTGTTCCCAACGTGTGGAA
AATTTGAAAAATTGCTTCGAACTTGAACCAGAGCGTGTTTGCAGCAGGTG
TCCCATTTCAGACCCCGTCGCATCATATGTGCTGCATATTTACATTTGCG
CACACAGCAGTACCTCGTACCGTCACAGAAGCGACCCGGTTATCAAATCA
GATGGCATCTAGGCATTTGAACGTACCAGGATTCATTCTTGGCGTGCCGG
GCTTCTTGTCCTCCCCTGAAGGTGTGAACGAGGAAGGGGCTTAACCCCCA
GCAACGAAACACGAACAGGGCCTGAGGGAACTCGGAAAAACTTCCTGTTC
GATAAGCACTTCCGTGTCTCGAAGTCATACGTATAACAGGCACCAAAGAG
TACGGTACACCCGTCCGAACAGAGATTTGTACATGGAGCGAACGAACTCG
AGAAGTCTTCAGACATGGCAGAGGGAAATTTTCGCACACCCGCCGTCCAC
AGGGACAGAGGCACAACGAGAAATGAGGTGTAGGGTTTGAAGGAAGCCGT
TGACGGGCGCTTGGAGCATGCTTGGTTCTAGCCACAGAGCAGACGAAGGG
CATCCATGTACTGCTGTCCTTGGGAGTGGGACTCCGCAGAGATATGTTGT
CGTCTTAGGGGACCCTACCCTGTCGCGAAGAAATTTGGCGGGGAAGCGCA
TTCCCGCCCGATGTTCACACGCGTTAGTTGCCATTCGTGAGCGCATCGTC
CATGTCCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTCTCTCG
AAATACTTGCAATTTTCTCGCTTGAAATTGCCACAGCGGCAACGGTTAGT
ACATGGGGAGGATACCTGAAATACTGACTTCTAATCTCTCTGGATACCTG
AAATACTGACTTTTAATCTCTTTGCGCTTCCTGGCGGTGTCGCTCTCTGA
CTCCCGCAGGCGTTCTTTTTCGCCGGTACCGGGTTTGCGGCGGGAGCGGC
GTACGCACACCTGCGCCCGGACAAGGCAAGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig587:5043..7326+

>mRNA_Ecto-sp13_S_contig587.16371.1 ID=mRNA_Ecto-sp13_S_contig587.16371.1|Name=mRNA_Ecto-sp13_S_contig587.16371.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig587:5043..7326+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGAAGTATGCGGTGGCAAGGGCCGTTCGTTCGCCGTCCGGCTGGTC
CGGGGCGTCTTCGGCGAGGGCGCGAGTTGCTGCGGACGGACGGCCGATCG
GCAGAAAAGCAAGCTCAAGCACCAGCTCCACCACACCACCTGCAGCAGGA
GCTGCGCCCTCTGATGGCGGGGGAGGATCTCGGAGCAGAGGTGCTTACAA
GGCGTTCTTTTTCGCCGGTACCGGGTTTGCGGCGGGAGCGGCGTACGCAC
ACCTGCGCCCGGACAAGGCAAGTTGA
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