mRNA_Ecto-sp13_S_contig587.16374.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig587.16374.1
Unique NamemRNA_Ecto-sp13_S_contig587.16374.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig587.16374.1 vs. uniprot
Match: D8LB10_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB10_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 4.730e-7
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = -3 
Query:  483 YLGYPDCAGTKQTPINIAADIMGTATV 563
            YLGYPDCAGTKQTPINIAAD+MGTAT+
Sbjct:   66 YLGYPDCAGTKQTPINIAADVMGTATM 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig587.16374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB10_ECTSI4.730e-792.59Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig587contigEcto-sp13_S_contig587:18207..18771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size565
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463815.514739-UTR-Ecto-sp13_S_contig587:18206..182131681463815.514739-UTR-Ecto-sp13_S_contig587:18206..18213Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig587 18207..18213 +
1681463815.533989-UTR-Ecto-sp13_S_contig587:18549..187711681463815.533989-UTR-Ecto-sp13_S_contig587:18549..18771Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig587 18550..18771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463815.5247095-CDS-Ecto-sp13_S_contig587:18213..185491681463815.5247095-CDS-Ecto-sp13_S_contig587:18213..18549Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig587 18214..18549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig587.16374.1prot_Ecto-sp13_S_contig587.16374.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig587 18214..18549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig587.16374.1

>prot_Ecto-sp13_S_contig587.16374.1 ID=prot_Ecto-sp13_S_contig587.16374.1|Name=mRNA_Ecto-sp13_S_contig587.16374.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MRRNRVSAAPRGDLPNAMMLLRHFQDFDFIAHPDPASHGDEMFSQGLEDV
ERNKRLFVGVSGTYMARYMTRPRRFHSTCTSRFFSYIHYLCMACYNLDAR
FLEPAPRNVWS*
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mRNA from alignment at Ecto-sp13_S_contig587:18207..18771+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig587.16374.1 ID=mRNA_Ecto-sp13_S_contig587.16374.1|Name=mRNA_Ecto-sp13_S_contig587.16374.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=565bp|location=Sequence derived from alignment at Ecto-sp13_S_contig587:18207..18771+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGGAGATGCGACGGAACCGAGTATCCGCGGCCCCGCGCGGGGACCTCC
CAAACGCGATGATGCTTTTGCGTCACTTTCAGGATTTTGATTTCATTGCA
CACCCAGACCCGGCTTCGCATGGAGACGAGATGTTCTCCCAAGGATTAGA
AGATGTAGAACGGAACAAGCGACTATTCGTGGGTGTTAGTGGTACATACA
TGGCGAGGTACATGACCCGTCCACGCCGGTTCCATTCAACCTGTACGAGC
AGGTTTTTCAGCTACATACATTATCTCTGCATGGCCTGTTACAATTTGGA
CGCCCGCTTCCTAGAACCTGCTCCACGCAATGTCTGGTCATGATCGAGCA
CGCGACAAACATCAGGTTGACCGCGCCATACACCTGTGCATTTCTTCGTT
TTGCGTGCTCAACATCGACATGCTGCCCGCCTTCATCAGCACTGTCGTTC
CTAACATTCTTTGCATGCAATTCAACACCACTTACGGTAGCCGTGCCCAT
GATGTCTGCGGCGATGTTGATTGGCGTCTGCTTGGTCCCTGCGCAGTCGG
GGTATCCCAAGTACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig587:18207..18771+

>mRNA_Ecto-sp13_S_contig587.16374.1 ID=mRNA_Ecto-sp13_S_contig587.16374.1|Name=mRNA_Ecto-sp13_S_contig587.16374.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig587:18207..18771+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGACGGAACCGAGTATCCGCGGCCCCGCGCGGGGACCTCCCAAACGC
GATGATGCTTTTGCGTCACTTTCAGGATTTTGATTTCATTGCACACCCAG
ACCCGGCTTCGCATGGAGACGAGATGTTCTCCCAAGGATTAGAAGATGTA
GAACGGAACAAGCGACTATTCGTGGGTGTTAGTGGTACATACATGGCGAG
GTACATGACCCGTCCACGCCGGTTCCATTCAACCTGTACGAGCAGGTTTT
TCAGCTACATACATTATCTCTGCATGGCCTGTTACAATTTGGACGCCCGC
TTCCTAGAACCTGCTCCACGCAATGTCTGGTCATGA
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