mRNA_Ecto-sp13_S_contig58666.16365.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58666.16365.1
Unique NamemRNA_Ecto-sp13_S_contig58666.16365.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58666.16365.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 2.200e-53
Identity = 100/126 (79.37%), Postives = 104/126 (82.54%), Query Frame = 1 
Query:    1 ADSMSPRLVVLDDVWEREVVDTLKLTGLQLLVTTRDRSVVSMPGECVEVGDMEENEALEVLRVGCGASKNLELPRAEALQVVGDCGNLPLSLGLAAPLLKGPPWDPKSWRTLHEALSKAMTTRLGT 378
            ADS+SPRLVVLDDVWERE+VD LKLTGLQLLVTTRDRSVVSMPGECVEVGDMEE+EALEVLRVGCGASKNLELPRAEALQ                    GPP DPKSWRTLHEALSKAM+TRLGT
Sbjct:  332 ADSVSPRLVVLDDVWEREIVDALKLTGLQLLVTTRDRSVVSMPGECVEVGDMEEDEALEVLRVGCGASKNLELPRAEALQ--------------------GPPQDPKSWRTLHEALSKAMSTRLGT 437
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BLAST of mRNA_Ecto-sp13_S_contig58666.16365.1 vs. uniprot
Match: A0A6H5KMV3_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMV3_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 2.030e-43
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:    1 ADSMSPRLVVLDDVWEREVVDTLKLTGLQLLVTTRDRSVVSMPGECVEVGDMEENEALEVLRVGCGASKNLELPRAEALQVVGDCGN 261
            ADS+SPRL+VLDDVWEREVVDTLKLTGLQLLVTTRDRSVVSMPGECVEVGDME+ EALE+LRVGCGASKNLELPRAE LQVV DCGN
Sbjct:  313 ADSVSPRLIVLDDVWEREVVDTLKLTGLQLLVTTRDRSVVSMPGECVEVGDMED-EALELLRVGCGASKNLELPRAEVLQVVVDCGN 398
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BLAST of mRNA_Ecto-sp13_S_contig58666.16365.1 vs. uniprot
Match: A0A6H5KF10_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF10_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 3.120e-33
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:    1 ADSMSPRLVVLDDVWEREVVDTLKLTGLQLLVTTRDRSVVSMPGECVEVGDMEENEALEVLRVGCGASKNLELPRAEALQ 240
            AD+ S RLVVLDDVWE EVV+ L++T LQLLVTTRDRSVVSMPGEC+EVGDMEE+EALEVLRVGCGA KNLELPR +ALQ
Sbjct:  524 ADAESQRLVVLDDVWEPEVVNALQVTELQLLVTTRDRSVVSMPGECIEVGDMEEDEALEVLRVGCGAPKNLELPRLQALQ 603
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BLAST of mRNA_Ecto-sp13_S_contig58666.16365.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.010e-21
Identity = 59/120 (49.17%), Postives = 74/120 (61.67%), Query Frame = 1 
Query:   13 SPRLVVLDDVWEREVVDTLKLTGLQLLVTTRDRSVVSMPGECVEVGDMEENEALEVLRVGCGA-SKNLELPRAEALQVVGDCGNLPLSLGLAA--PLLKGPPWDPKSWRTLHEALSKAMT 363
            SPRLVVLDDVWEREVVD L   G ++LVTTRDRSVV +P  C+E+GDM E EALE+L    G   +  +  R    +VV  CG LPL L +A   P++KG      +W  L + L   +T
Sbjct:  263 SPRLVVLDDVWEREVVDALLPLGFKVLVTTRDRSVVGVPTRCLELGDMTEEEALELLLKTSGTVGRPGDSVRTVMTKVVTLCGRLPLVLAIAGSLPVVKGKGLTAGAWGKLIDELENVVT 382
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BLAST of mRNA_Ecto-sp13_S_contig58666.16365.1 vs. uniprot
Match: D7FH19_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH19_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 4.770e-21
Identity = 57/113 (50.44%), Postives = 68/113 (60.18%), Query Frame = 1 
Query:   22 LVVLDDVWEREVVDTLKLTGLQLLVTTRDRSVVSM--PGECVEVGDMEENEALEVLRVGCGASKNLELPRAEALQVVGDCGNLPLSLGLAAPLLKGPPWDPKSWRTLHEALSK 354
            LVVLD+VW  EVV+    TG  +LVTTR R+V+S    G   EVGDM E +ALEVL     A     LP  EA QV  DCG LPL+LG+   L K  P DP SWR +H+ L +
Sbjct:  362 LVVLDNVWNVEVVNAFASTGFHVLVTTRQRAVISAVHAGVWTEVGDMSEEDALEVLSKASQADG--PLPAEEARQVALDCGMLPLALGMIGALAKDQPLDPLSWRAVHKKLQE 472
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BLAST of mRNA_Ecto-sp13_S_contig58666.16365.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 2.250e-20
Identity = 57/120 (47.50%), Postives = 73/120 (60.83%), Query Frame = 1 
Query:   13 SPRLVVLDDVWEREVVDTLKLTGLQLLVTTRDRSVVSMPGECVEVGDMEENEALEVLRVGCGA-SKNLELPRAEALQVVGDCGNLPLSLGLAA--PLLKGPPWDPKSWRTLHEALSKAMT 363
            SPRLVVLDDVWEREVV      GL++LVTTRDRS+V +PG  +E+GDM E+EALE+L    G   +  +  R +  +VV  CG LPL L +A   P++KG      +W  L E      T
Sbjct:  363 SPRLVVLDDVWEREVVAAFLGVGLKVLVTTRDRSIVGVPGGLLELGDMAEDEALELLWKTSGTVGQPGDGVRTQMTKVVDRCGRLPLVLAIAGSMPVVKGKGLKDGAWEELIEEFENVTT 482
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BLAST of mRNA_Ecto-sp13_S_contig58666.16365.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 4.010e-20
Identity = 57/114 (50.00%), Postives = 73/114 (64.04%), Query Frame = 1 
Query:   16 PRLVVLDDVWEREVVDTLKLTGLQLLVTTRDRSVVSMPGECVEVGDMEENEALEVLRVGCGA-SKNLELPRAEALQVVGDCGNLPLSLGLAAPL--LKGPPWDPKSWRTLHEAL 348
            PRLVVLDDVWEREVVD     G ++L+TTRDRSVV +P   +EVGDM E EALE+LR   GA  +  +  R +  +VV  CG+LPL L +A  +  +KG      +W+ L E L
Sbjct:  333 PRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVVVPAGRLEVGDMTEEEALELLRKSSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVKGKGLTAVAWKELAENL 446
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BLAST of mRNA_Ecto-sp13_S_contig58666.16365.1 vs. uniprot
Match: A0A6H5JLW6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW6_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.210e-20
Identity = 60/115 (52.17%), Postives = 72/115 (62.61%), Query Frame = 1 
Query:   13 SPRLVVLDDVWEREVVDTLKLTGLQLLVTTRDRSVVSMPGECVEVGDMEENEALEVLRVGCGA--SKNLELPRAEALQVVGDCGNLPLSLGLAAPLLKGPPWDPKSWRTLHEALS 351
            SPRLVVLDDV EREVV+ L   GL+L+VTTRDRSVV +PG C+EVGDM E EALE+L +  GA  S+  +LP A A  V+G           A    +  P  P +W  LHE LS
Sbjct:   85 SPRLVVLDDVLEREVVEALLPLGLKLVVTTRDRSVVGVPGGCLEVGDMTEEEALELLMLASGAVSSRIADLPLAMA--VIG-----------AMDESRESPHRPDTWTKLHEKLS 186
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BLAST of mRNA_Ecto-sp13_S_contig58666.16365.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.060e-19
Identity = 59/127 (46.46%), Postives = 77/127 (60.63%), Query Frame = 1 
Query:    1 ADSMSPRLVVLDDVWEREVVDTLKLTGLQLLVTTRDRSVVSMPGECVEVGDMEENEALEVLRVGCGASKNLELPRAEALQVVGDCGNLPLSLGLAAPL--LKGPPWDPKSWRTLHEALSKAMTTRLG 375
            A+   PRLVVLDDVWER VVDTL+ TGL+LLVTTR  SVV+M G    VG+M+  EA E+L+   GA   + LP+ EA QV   CG   L+L +A  L  +K  P    +WR L   +++   +  G
Sbjct:  336 AEDKLPRLVVLDDVWERAVVDTLRPTGLRLLVTTRLDSVVAMRGGRTTVGNMDGGEARELLKSRSGA---IALPKTEADQVAAACGWHALTLAIAGSLRFVKDDPNSASTWRRLASEMTQTKNSVRG 459
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BLAST of mRNA_Ecto-sp13_S_contig58666.16365.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.070e-19
Identity = 58/124 (46.77%), Postives = 74/124 (59.68%), Query Frame = 1 
Query:   13 SPRLVVLDDVWEREVVDTLKLTGLQLLVTTRDRSVVSMPGECVEVGDMEENEALEVLRVGCGASKNLELPRAEALQVVGDCGNLPLSLGLAAPL--LKGPPWDPKSWRTL---HEALSKAMTTR 369
            SPRLVVLDDVWEREVVD     G +LL+TTRDRS+V  P   +E+GDM E EALE+LR   G     +  R +  +VV  CG+LPL L +A  +  +KG      +W  L    E ++K M  R
Sbjct:  171 SPRLVVLDDVWEREVVDAFVPLGFKLLLTTRDRSIVCDPAGRLELGDMTEEEALELLRKTSGTVDPGDDVRMKMTKVVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKEFENVAKKMRAR 294
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58666.16365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6W2_ECTSI2.200e-5379.37NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KMV3_9PHAE2.030e-4391.95NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KF10_9PHAE3.120e-3382.50NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KU94_9PHAE1.010e-2149.17NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FH19_ECTSI4.770e-2150.44NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LPV9_ECTSI2.250e-2047.50NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
A0A6H5KXS7_9PHAE4.010e-2050.00NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JLW6_9PHAE5.210e-2052.17NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JJK0_9PHAE1.060e-1946.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUD7_ECTSI1.070e-1946.77NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58666contigEcto-sp13_S_contig58666:231..845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score185.3
Seed ortholog evalue1.8e-44
Seed eggNOG ortholog2880.D7G6W2
Model size378
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
Cds size369
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463815.093626-UTR-Ecto-sp13_S_contig58666:230..2391681463815.093626-UTR-Ecto-sp13_S_contig58666:230..239Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig58666 231..239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463815.1075637-CDS-Ecto-sp13_S_contig58666:239..4701681463815.1075637-CDS-Ecto-sp13_S_contig58666:239..470Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58666 240..470 +
1681463815.1184185-CDS-Ecto-sp13_S_contig58666:707..8451681463815.1184185-CDS-Ecto-sp13_S_contig58666:707..845Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58666 708..845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58666.16365.1prot_Ecto-sp13_S_contig58666.16365.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58666 240..845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58666.16365.1

>prot_Ecto-sp13_S_contig58666.16365.1 ID=prot_Ecto-sp13_S_contig58666.16365.1|Name=mRNA_Ecto-sp13_S_contig58666.16365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
MSPRLVVLDDVWEREVVDTLKLTGLQLLVTTRDRSVVSMPGECVEVGDME
ENEALEVLRVGCGASKNLELPRAEALQVVGDCGNLPLSLGLAAPLLKGPP
WDPKSWRTLHEALSKAMTTRLGT
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mRNA from alignment at Ecto-sp13_S_contig58666:231..845+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58666.16365.1 ID=mRNA_Ecto-sp13_S_contig58666.16365.1|Name=mRNA_Ecto-sp13_S_contig58666.16365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58666:231..845+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGACTCCATGTCACCGCGCTTGGTCGTGCTCGACGACGTGTGGGAGCG
GGAGGTTGTTGACACCCTGAAGCTGACGGGTCTGCAGCTGCTCGTAACCA
CACGCGACCGTTCGGTGGTGTCGATGCCGGGAGAGTGCGTGGAGGTGGGG
GATATGGAGGAGAACGAGGCCCTGGAGGTACTGAGAGTCGGTTGCGGGGC
ATCCAAGAACCTCGAGTTACCGCGTGCTGAGGCGTTGCAGGTGACAGTCT
CGACAATCGAATTGAGATTTGTTATCGCGGACAGATTTGCTTTGCACCAG
CTGCTATCCCACCTGTGCTACGTTCCTCGAAACAGTAGTAGCAGGACGGA
AGTTCTGGCACGATTGGTATTCTTGTCCCTTGTGCTTGGGTTGTTAAATA
GATGGCGCTCGATAGGTAGTGCGGTCGATCTCGGCCTTCTTGGTTCAGCT
TCGAACGCGCCTGCCCCTTCGCCTCAGGTCGTGGGTGACTGTGGGAATCT
ACCACTCTCGCTTGGCCTCGCCGCACCGCTGCTCAAGGGTCCCCCATGGG
ATCCCAAGTCCTGGCGAACTTTGCACGAGGCTTTGAGCAAAGCAATGACG
ACAAGGCTGGGCACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58666:231..845+

>mRNA_Ecto-sp13_S_contig58666.16365.1 ID=mRNA_Ecto-sp13_S_contig58666.16365.1|Name=mRNA_Ecto-sp13_S_contig58666.16365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58666:231..845+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCACCGCGCTTGGTCGTGCTCGACGACGTGTGGGAGCGGGAGGTTGT
TGACACCCTGAAGCTGACGGGTCTGCAGCTGCTCGTAACCACACGCGACC
GTTCGGTGGTGTCGATGCCGGGAGAGTGCGTGGAGGTGGGGGATATGGAG
GAGAACGAGGCCCTGGAGGTACTGAGAGTCGGTTGCGGGGCATCCAAGAA
CCTCGAGTTACCGCGTGCTGAGGCGTTGCAGGTCGTGGGTGACTGTGGGA
ATCTACCACTCTCGCTTGGCCTCGCCGCACCGCTGCTCAAGGGTCCCCCA
TGGGATCCCAAGTCCTGGCGAACTTTGCACGAGGCTTTGAGCAAAGCAAT
GACGACAAGGCTGGGCACC
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