mRNA_Ecto-sp13_S_contig5866.16364.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5866.16364.1
Unique NamemRNA_Ecto-sp13_S_contig5866.16364.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5866.16364.1 vs. uniprot
Match: D7G8Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Z9_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.580e-28
Identity = 80/92 (86.96%), Postives = 83/92 (90.22%), Query Frame = 2 
Query:  251 TQQQGEGEVSAPAEPPASSKLSPGLAARMKAMRSSTDSVPEGEEGEXXXXXXXXXXXXATSGSSSSXSKVSPGLAARMGRAFPIPMPGGGMP 526
            T Q GEGEVSAPAE PA+SKLSPGLAAR+ AMRSSTD VPEGEEGEXXXXXXXXXXX ATSGSSSS SKVSPGLAARMG+AFPIPMPGG  P
Sbjct:  135 TSQHGEGEVSAPAEAPAASKLSPGLAARLNAMRSSTDYVPEGEEGEXXXXXXXXXXXLATSGSSSSFSKVSPGLAARMGKAFPIPMPGGEQP 226
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5866.16364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Z9_ECTSI2.580e-2886.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5866contigEcto-sp13_S_contig5866:942..3126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1481
Hectar predicted targeting categorysignal peptide
Exons4
Cds size963
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5866.16364.1prot_Ecto-sp13_S_contig5866.16364.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5866 1417..3083 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463814.9567893-UTR-Ecto-sp13_S_contig5866:941..14161681463814.9567893-UTR-Ecto-sp13_S_contig5866:941..1416Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5866 942..1416 -
1681463815.0222027-UTR-Ecto-sp13_S_contig5866:3083..31261681463815.0222027-UTR-Ecto-sp13_S_contig5866:3083..3126Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5866 3084..3126 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463814.9686887-CDS-Ecto-sp13_S_contig5866:1416..17191681463814.9686887-CDS-Ecto-sp13_S_contig5866:1416..1719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5866 1417..1719 -
1681463814.978598-CDS-Ecto-sp13_S_contig5866:1742..17871681463814.978598-CDS-Ecto-sp13_S_contig5866:1742..1787Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5866 1743..1787 -
1681463814.9887345-CDS-Ecto-sp13_S_contig5866:2146..22891681463814.9887345-CDS-Ecto-sp13_S_contig5866:2146..2289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5866 2147..2289 -
1681463814.9985638-CDS-Ecto-sp13_S_contig5866:2611..30831681463814.9985638-CDS-Ecto-sp13_S_contig5866:2611..3083Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5866 2612..3083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5866.16364.1

>prot_Ecto-sp13_S_contig5866.16364.1 ID=prot_Ecto-sp13_S_contig5866.16364.1|Name=mRNA_Ecto-sp13_S_contig5866.16364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=321bp
MSASQLVRYLLLLCMQSLRYTGSMRRSRGCLEHIKIKLEQHFANDLTRKI
RALPSPAHIHTLKTQLIKFTQQQGEGEVSAPAEPPASSKLSPGLAARMKA
MRSSTDSVPEGEEGEEEEETPPPPPALATSGSSSSSSKVSPGLAARMGRA
FPIPMPGGGMPAGGVAELKRRKQEKEQAERAAAGMPEEPKPSETAVEQKP
GELQHANLSRPTISQRRRPRDRGSGSSSTSSSSSSSSSSPSVSTVCHGTR
KRNLERAGENSFAASGNNGCIVRKHGREDGCPGSSSSSSSSSSNTSTNGH
ELCWQDELHVKGRVDPCCQR*
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mRNA from alignment at Ecto-sp13_S_contig5866:942..3126-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5866.16364.1 ID=mRNA_Ecto-sp13_S_contig5866.16364.1|Name=mRNA_Ecto-sp13_S_contig5866.16364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2185bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5866:942..3126- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGATGAGATTGGTATCACTCTCTCATATTGGGAAGGTGAACGATGAGTG
CGTCCCAGCTTGTCCGCTACTTGCTTTTGCTGTGTATGCAAAGCTTGCGC
TACACAGGTAGCATGCGTAGGTCCAGAGGGTGCTTGGAGCACATAAAGAT
AAAGTTAGAACAACATTTCGCAAACGACCTCACACGAAAAATCCGTGCCC
TGCCATCTCCCGCTCATATCCATACCTTGAAAACACAACTGATCAAATTT
ACCCAGCAGCAAGGTGAAGGTGAAGTATCCGCACCGGCAGAACCTCCCGC
CTCGTCCAAGCTTTCGCCTGGGCTTGCAGCCCGTATGAAGGCGATGAGAT
CGAGCACAGATTCTGTGCCGGAGGGGGAGGAGGGGGAGGAAGAGGAAGAG
ACTCCGCCCCCCCCGCCTGCTTTGGCCACGTCCGGGTCGAGCTCTTCGTC
TTCGAAGGTGTCCCCCGGTCTCGCGGCTCGTATGGGGAGAGCCTTCCCAA
TTCCTATGCCTGGTGGTGAGCAGCCCTGTTGATAAATTGGATACTCTCCC
GGTTGTCCATGCGTATGTGAACCGTTGCAAGGATTTCGAACTTATGGCGT
GGTTTGCTGCTTTCAGTAGCTTGCTGGAGCTTTGGTGGTTGGTTTACACT
CCGATGTCAACAACATACACGCGGTTCAAGGCCGCCTTGGTTTCTGCGTA
GAAGATTAGCTGTTGACAAGAGCTTTTGTTTTGATAAGAGCTTTTGTCTT
GTCGTCTTGTCTAGTGTGAGTCCTGATTGAAAGTAGTGAACAACAACAAG
AAGAGCTTTGGTTATAATTTGGCGCACGTGTTCCCAGGTGGTATGCCGGC
AGGGGGTGTCGCGGAGCTGAAACGTCGCAAACAAGAGAAAGAACAGGCGG
AGAGAGCGGCAGCAGGCATGCCCGAGGAGCCAAAGCCGTCCGAGACTGCA
GTGGAGCAAAAGCCCGGCGAGCTGCAGCACGTGAGTATTTATGTCCCTGT
ACATCAGGAGGAAAAAAGTCGACCGGTTGGTACATACATTAGTGGACCGT
CACCGTTCCTGATGCGACTATTATGTAAAGCGTGTTGTGGTCGTCTACCG
TTGGTGGAAGTGATAATCTGTCACGCTGGTCTTGGCTACGCGACACCGGT
ACACCCGGGGGTTGGGTGGAGGATTATTATTTTACATGTGACACGGACAG
GAAACGTTCGGCACTCAGGTTTGTGGGGCGATCGTGGCAATTCTCCTTGT
GTGTTGCGAATGCTTGCTGCACCTCAAGTCACGATGCCGACGTGCACGCC
GCCCCCCCCCCATCTCGACCTTGTCCCCGAATCAAACAGGCGAACCTATC
CCGTCCTACTATTTCTCAAAGAAGGCGGCCCCGTAAGGCAACCAGGCCGT
TCAAACCGACCGCGGCAGCGGCAGCAGCAGTACCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCCCCAGCGTCTCCACCGTATGCCACGGAACCAGAAAA
CGCAACCTCGAACGTGCCGGAGAAAACAGCTTCGCCGCCTCCGGCAACAA
CGGGTGCATCGTCAGAAAACACGGCAGAGAAGACGGCTGCCCCGGCAGCA
GCAGTAGCAGCAGCAGCAGCAGCAGTAACACCAGCACAAATGGACACGAA
CTCTGTTGGCAAGATGAGCTCCATGTTAAAGGCCGCGTCGATCCATGTTG
CCAACGATGACGAGGATGATGACGAATGGGACGAGTAGAAGTGACGTGCA
CGACGAGGCGCATCCAAGCTTAGATCCACTGGGTAGGTTTGCCAATCGTT
TGCAATACGGGGCGTGTGCGCGTACGTGTGCTTCGATCACAAGAGGGTGC
CGCATAAGTGAGTTCTAGTTTCTGAGACCCTTGAGGTACGTAGATGCTTG
CACCTTCGGCCTTTTCGTTGTTCGACATAAGCCTTCATTGTTTGGATTGG
GTTGTGCCGTGTTGCATCGGAGGTCCTTCCCAGCGGCCTTGCATCCACCG
CTCTCTGCGTAGAACACCATAACCACGCATACCTACGAGTAGCTTGGACT
CGTCGGTACACGTTGTTGAAGCCCCATGTACAGCATGGGGTCCTTCGTAG
GGCAGGGGAACCCCCAAAGCCTGGGCCTAGCTGGCCCACGTACCGACACA
GTTTGTTGGCTACTCGCCCTGCACACACCTTTCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5866:942..3126-

>mRNA_Ecto-sp13_S_contig5866.16364.1 ID=mRNA_Ecto-sp13_S_contig5866.16364.1|Name=mRNA_Ecto-sp13_S_contig5866.16364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5866:942..3126- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTGCGTCCCAGCTTGTCCGCTACTTGCTTTTGCTGTGTATGCAAAG
CTTGCGCTACACAGGTAGCATGCGTAGGTCCAGAGGGTGCTTGGAGCACA
TAAAGATAAAGTTAGAACAACATTTCGCAAACGACCTCACACGAAAAATC
CGTGCCCTGCCATCTCCCGCTCATATCCATACCTTGAAAACACAACTGAT
CAAATTTACCCAGCAGCAAGGTGAAGGTGAAGTATCCGCACCGGCAGAAC
CTCCCGCCTCGTCCAAGCTTTCGCCTGGGCTTGCAGCCCGTATGAAGGCG
ATGAGATCGAGCACAGATTCTGTGCCGGAGGGGGAGGAGGGGGAGGAAGA
GGAAGAGACTCCGCCCCCCCCGCCTGCTTTGGCCACGTCCGGGTCGAGCT
CTTCGTCTTCGAAGGTGTCCCCCGGTCTCGCGGCTCGTATGGGGAGAGCC
TTCCCAATTCCTATGCCTGGTGGTGGTATGCCGGCAGGGGGTGTCGCGGA
GCTGAAACGTCGCAAACAAGAGAAAGAACAGGCGGAGAGAGCGGCAGCAG
GCATGCCCGAGGAGCCAAAGCCGTCCGAGACTGCAGTGGAGCAAAAGCCC
GGCGAGCTGCAGCACGCGAACCTATCCCGTCCTACTATTTCTCAAAGAAG
GCGGCCCCGTGACCGCGGCAGCGGCAGCAGCAGTACCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCCCCAGCGTCTCCACCGTATGCCACGGAACCAGA
AAACGCAACCTCGAACGTGCCGGAGAAAACAGCTTCGCCGCCTCCGGCAA
CAACGGGTGCATCGTCAGAAAACACGGCAGAGAAGACGGCTGCCCCGGCA
GCAGCAGTAGCAGCAGCAGCAGCAGCAGTAACACCAGCACAAATGGACAC
GAACTCTGTTGGCAAGATGAGCTCCATGTTAAAGGCCGCGTCGATCCATG
TTGCCAACGATGA
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