mRNA_Ecto-sp13_S_contig58641.16362.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58641.16362.1
Unique NamemRNA_Ecto-sp13_S_contig58641.16362.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: D8LJR5_ECTSI (Elongator complex protein 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJR5_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.260e-18
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 1
Query:    4 DQTLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKV 126
            ++TLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKV
Sbjct:  471 EETLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKV 511          
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: A0A7S3UVY7_HETAK (Elongator complex protein 3 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVY7_HETAK)

HSP 1 Score: 67.0 bits (162), Expect = 7.090e-12
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    4 DQTLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKV 126
            +  LYGFLRLRIPSG SP++P L+G AL+RELHVYG L++V
Sbjct:  273 ESVLYGFLRLRIPSGNSPLVPGLRGAALVRELHVYGLLRRV 313          
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: A0A836CEU0_9STRA (Elongator complex protein 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEU0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.030e-11
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    4 DQTLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKV 126
            ++ LYGFLRLRIPS  S  L +LKGCALIRELHVYGKLK+V
Sbjct:  469 EKVLYGFLRLRIPSRRSQCLLELKGCALIRELHVYGKLKEV 509          
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: A0A6N1P2T5_9VIRU (Radical SAM core domain-containing protein n=1 Tax=Tupanvirus soda lake TaxID=2126985 RepID=A0A6N1P2T5_9VIRU)

HSP 1 Score: 57.0 bits (136), Expect = 2.540e-8
Identity = 24/42 (57.14%), Postives = 33/42 (78.57%), Query Frame = 1
Query:    4 DQTL-YGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKV 126
            D+T+ YGF RLR+   +S ++P+L GCA+IRELHVYGK+  V
Sbjct:  489 DETIIYGFCRLRLTPNSSTVMPELDGCAMIRELHVYGKMNAV 530          
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: A0A2G9NCJ9_9ARCH (tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 (Fragment) n=1 Tax=Candidatus Pacearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_35_13 TaxID=1974445 RepID=A0A2G9NCJ9_9ARCH)

HSP 1 Score: 55.5 bits (132), Expect = 4.200e-8
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 1
Query:    1 TDQTLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGK 114
            ++  L+G LRLR P   SP++P+L  CA++RE+HVYGK
Sbjct:   91 SENVLFGLLRLRFPGSPSPLIPELNDCAIVREVHVYGK 128          
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: A0A3A0BA09_9BACT (tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 n=1 Tax=Candidatus Microgenomates bacterium TaxID=2093373 RepID=A0A3A0BA09_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 4.760e-8
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1
Query:    4 DQTLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGK 114
            DQ LY  LRLR+P  +SP+ P+L  CA+IRE+H YGK
Sbjct:  413 DQKLYSLLRLRLPEVSSPLFPELSDCAIIREIHTYGK 449          
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: A0A812I3D1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812I3D1_9DINO)

HSP 1 Score: 55.8 bits (133), Expect = 6.500e-8
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 1
Query:    4 DQTLYGFLRLRI---PSGTSPILPDLKGCALIRELHVYGKL 117
            + TLYG LRLR    P   SP+ P+L GCALIRELHVYG L
Sbjct:  583 NATLYGLLRLRFNDDPRAPSPVFPELSGCALIRELHVYGAL 623          
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: A0A6C0LYY4_9ZZZZ (N-acetyltransferase domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LYY4_9ZZZZ)

HSP 1 Score: 55.8 bits (133), Expect = 6.500e-8
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 1
Query:    4 DQTLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKL 117
            ++T+YGF+RLR+    + +  +L GCALIRELHVYGKL
Sbjct:  490 NKTIYGFIRLRLDDAKNKVFEELNGCALIRELHVYGKL 527          
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: K2C2V9_9BACT (Radical SAM core domain-containing protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=K2C2V9_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 8.900e-8
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1
Query:    4 DQTLYGFLRLRIPSG-TSPILPDLKGCALIRELHVYGK 114
            D  L+  LRLR+P G T+P+ P+LKGCALIRE+H YG+
Sbjct:  399 DTKLFSLLRLRLPDGQTAPLFPELKGCALIREIHTYGQ 436          
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Match: A0A6C0BEA8_9ZZZZ (Elp3 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BEA8_9ZZZZ)

HSP 1 Score: 55.1 bits (131), Expect = 1.220e-7
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1
Query:    4 DQTLYGFLRLRIPSGTSPILPD-LKGCALIRELHVYGKLKK 123
            ++ LYGF+RLR PS    I+ D LKGCALIRELHVYG L K
Sbjct:  488 NKVLYGFVRLRFPSHDQSIVFDELKGCALIRELHVYGNLTK 528          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58641.16362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJR5_ECTSI1.260e-1895.12Elongator complex protein 3 n=2 Tax=Ectocarpus Tax... [more]
A0A7S3UVY7_HETAK7.090e-1268.29Elongator complex protein 3 (Fragment) n=1 Tax=Het... [more]
A0A836CEU0_9STRA1.030e-1175.61Elongator complex protein 3 n=1 Tax=Tribonema minu... [more]
A0A6N1P2T5_9VIRU2.540e-857.14Radical SAM core domain-containing protein n=1 Tax... [more]
A0A2G9NCJ9_9ARCH4.200e-852.63tRNA uridine(34) 5-carboxymethylaminomethyl modifi... [more]
A0A3A0BA09_9BACT4.760e-859.46tRNA uridine(34) 5-carboxymethylaminomethyl modifi... [more]
A0A812I3D1_9DINO6.500e-863.41Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A6C0LYY4_9ZZZZ6.500e-857.89N-acetyltransferase domain-containing protein n=1 ... [more]
K2C2V9_9BACT8.900e-860.53Radical SAM core domain-containing protein n=1 Tax... [more]
A0A6C0BEA8_9ZZZZ1.220e-765.85Elp3 domain-containing protein n=1 Tax=viral metag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58641contigEcto-sp13_S_contig58641:610..735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score87.4
Seed ortholog evalue1.7e-15
Seed eggNOG ortholog2880.D8LJR5
Model size126
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.radical SAM domain protein
EggNOG OGsCOG1243@1,KOG2535@2759
Cds size126
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463814.7594326-CDS-Ecto-sp13_S_contig58641:609..7351681463814.7594326-CDS-Ecto-sp13_S_contig58641:609..735Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58641 610..735 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58641.16362.1prot_Ecto-sp13_S_contig58641.16362.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58641 610..735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58641.16362.1

>prot_Ecto-sp13_S_contig58641.16362.1 ID=prot_Ecto-sp13_S_contig58641.16362.1|Name=mRNA_Ecto-sp13_S_contig58641.16362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
TDQTLYGFLRLRIPSGTSPILPDLKGCALIRELHVYGKLKKV
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mRNA from alignment at Ecto-sp13_S_contig58641:610..735-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58641.16362.1 ID=mRNA_Ecto-sp13_S_contig58641.16362.1|Name=mRNA_Ecto-sp13_S_contig58641.16362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58641:610..735- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGACCAGACGCTGTATGGATTCCTGAGGCTACGTATCCCTAGCGGGAC AAGTCCCATCCTTCCCGACCTCAAGGGCTGTGCCTTGATCCGGGAGTTGC ACGTCTACGGCAAGCTCAAGAAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58641:610..735-

>mRNA_Ecto-sp13_S_contig58641.16362.1 ID=mRNA_Ecto-sp13_S_contig58641.16362.1|Name=mRNA_Ecto-sp13_S_contig58641.16362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58641:610..735- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGACCAGACGCTGTATGGATTCCTGAGGCTACGTATCCCTAGCGGGAC
AAGTCCCATCCTTCCCGACCTCAAGGGCTGTGCCTTGATCCGGGAGTTGC
ACGTCTACGGCAAGCTCAAGAAGGTA
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