mRNA_Ecto-sp13_S_contig5863.16359.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5863.16359.1
Unique NamemRNA_Ecto-sp13_S_contig5863.16359.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5863.16359.1 vs. uniprot
Match: D8LBB1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBB1_ECTSI)

HSP 1 Score: 919 bits (2376), Expect = 0.000e+0
Identity = 504/555 (90.81%), Postives = 515/555 (92.79%), Query Frame = 1 
Query:   67 MEVAPQPTNGDNSSGRSRIDSNASSDWDEWADAMVAQGEFSGESAAAGRAPGXXXXXXXXXXMAVDEQDEEWVRSLMEQGTVGSVIEGMESPAWDYVLQMVVEERERGGAATVGSPAQEIAGVAATEFVSRWLRSNLPITLPALNALTLIEGSCAQQHHRIENRSGDGQEQRRVRGWRALADSVAEPSSVAVVSCSPEQGMHRVNLFSLGANSGAALAAAVVQPGAVGLLVPAVGAAALGEKTVAGGYNSNDTRGSTGEVSGRRSTGPGCSDRGVVFESLDSRILEDALVSAMRRLGLGVKNRSSRSGMWKLRPGAVLPAGDTSITSAEVRPVTLEDAGFIARCCSSGLGGVGRSEALVRGLIGRNPSAGIRRGSQLRAWCLSFDNGLAGTLHIAPQTTESGIPLPILPPLASGGEEEGQFSPRNMVLALLGSLLARSPGTDCAANDTTTAPTDDEATRSFSDVTSSTEEQQVGLSGSSLAHGRGAGGGVSVGLEAVVVDDDSPFVGLFGELELFERVCDADWVRFEPLASCTSGASGVPAVVAPVPLSALVLNP 1731
            MEVAPQPTNGDNSS RSR DSNASSDWD+WADAMVAQGE  GESA       XXXXXXXXXXMAVDEQDEEWVRSLMEQGTVGSVIEGMESPAWDYVLQMVVEERERGGAATV SP QEI GVAATEFVSRWLRSNLPITLPALNAL LIEG CAQQH RI +RSGDGQEQRRVRG RALADSVAEPSSVAVVSCSPEQGMHRVNLFSL ANSGAALAAAVVQPGAVGLLVP VGAAALGE+TVA GYNSNDTRGS+GEVSGRRSTGPGCSDRGVVFESLDSRILEDALVS MRRLGLG+K RS RSGMWKLRPGAVLPAGDTSITSAEVRPVTLED G IARCCSSGLG VGRSEALVRGLIGRNPSAGIRRGSQL AWCLSFDNGLAG L+IAPQTTESG+PLPILPPLASGG+EEGQFSPRNMVLALLGSLLAR PGTD AAN+T TA TDDEATRS SD  SSTEE+QVGLSGSSLAHGRGAGGGVSVGLEAVVVDDDSPFVGLFGELEL ERVCDADWVRFEPL SC+SGASG PAVVAPVPLSALVLNP
Sbjct:    1 MEVAPQPTNGDNSSSRSRADSNASSDWDDWADAMVAQGEPPGESAXXXXXXXXXXXXXXXXXMAVDEQDEEWVRSLMEQGTVGSVIEGMESPAWDYVLQMVVEERERGGAATVESPVQEITGVAATEFVSRWLRSNLPITLPALNALKLIEGGCAQQHQRIGSRSGDGQEQRRVRGGRALADSVAEPSSVAVVSCSPEQGMHRVNLFSLSANSGAALAAAVVQPGAVGLLVPPVGAAALGEETVARGYNSNDTRGSSGEVSGRRSTGPGCSDRGVVFESLDSRILEDALVSTMRRLGLGLKKRS-RSGMWKLRPGAVLPAGDTSITSAEVRPVTLEDVGLIARCCSSGLGEVGRSEALVRGLIGRNPSAGIRRGSQLVAWCLSFDNGLAGALYIAPQTTESGLPLPILPPLASGGQEEGQFSPRNMVLALLGSLLARPPGTDRAANNTPTARTDDEATRSVSDAASSTEEKQVGLSGSSLAHGRGAGGGVSVGLEAVVVDDDSPFVGLFGELELLERVCDADWVRFEPLTSCSSGASGAPAVVAPVPLSALVLNP 554
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5863.16359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBB1_ECTSI0.000e+090.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5863contigEcto-sp13_S_contig5863:125..3800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1762
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionAcyl-CoA N-acyltransferase
Ec32 orthologEc-27_004570.1
Cds size1734
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5863.16359.1prot_Ecto-sp13_S_contig5863.16359.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5863 153..3800 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463814.4100962-UTR-Ecto-sp13_S_contig5863:124..1521681463814.4100962-UTR-Ecto-sp13_S_contig5863:124..152Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5863 125..152 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463814.4260013-CDS-Ecto-sp13_S_contig5863:152..6811681463814.4260013-CDS-Ecto-sp13_S_contig5863:152..681Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5863 153..681 -
1681463814.4378054-CDS-Ecto-sp13_S_contig5863:1099..12571681463814.4378054-CDS-Ecto-sp13_S_contig5863:1099..1257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5863 1100..1257 -
1681463814.4482179-CDS-Ecto-sp13_S_contig5863:1458..15251681463814.4482179-CDS-Ecto-sp13_S_contig5863:1458..1525Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5863 1459..1525 -
1681463814.4586976-CDS-Ecto-sp13_S_contig5863:2171..24831681463814.4586976-CDS-Ecto-sp13_S_contig5863:2171..2483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5863 2172..2483 -
1681463814.4698803-CDS-Ecto-sp13_S_contig5863:2851..31351681463814.4698803-CDS-Ecto-sp13_S_contig5863:2851..3135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5863 2852..3135 -
1681463814.481194-CDS-Ecto-sp13_S_contig5863:3416..38001681463814.481194-CDS-Ecto-sp13_S_contig5863:3416..3800Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5863 3417..3800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5863.16359.1

>prot_Ecto-sp13_S_contig5863.16359.1 ID=prot_Ecto-sp13_S_contig5863.16359.1|Name=mRNA_Ecto-sp13_S_contig5863.16359.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=578bp
MTENGNHKRQRMSPPPTPDIDDMEVAPQPTNGDNSSGRSRIDSNASSDWD
EWADAMVAQGEFSGESAAAGRAPGGGVGGGGGGGMAVDEQDEEWVRSLME
QGTVGSVIEGMESPAWDYVLQMVVEERERGGAATVGSPAQEIAGVAATEF
VSRWLRSNLPITLPALNALTLIEGSCAQQHHRIENRSGDGQEQRRVRGWR
ALADSVAEPSSVAVVSCSPEQGMHRVNLFSLGANSGAALAAAVVQPGAVG
LLVPAVGAAALGEKTVAGGYNSNDTRGSTGEVSGRRSTGPGCSDRGVVFE
SLDSRILEDALVSAMRRLGLGVKNRSSRSGMWKLRPGAVLPAGDTSITSA
EVRPVTLEDAGFIARCCSSGLGGVGRSEALVRGLIGRNPSAGIRRGSQLR
AWCLSFDNGLAGTLHIAPQTTESGIPLPILPPLASGGEEEGQFSPRNMVL
ALLGSLLARSPGTDCAANDTTTAPTDDEATRSFSDVTSSTEEQQVGLSGS
SLAHGRGAGGGVSVGLEAVVVDDDSPFVGLFGELELFERVCDADWVRFEP
LASCTSGASGVPAVVAPVPLSALVLNP*
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mRNA from alignment at Ecto-sp13_S_contig5863:125..3800-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5863.16359.1 ID=mRNA_Ecto-sp13_S_contig5863.16359.1|Name=mRNA_Ecto-sp13_S_contig5863.16359.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3676bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5863:125..3800- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGAAAACGGCAACCACAAACGGCAGCGAATGTCACCGCCACCGAC
TCCCGATATTGACGATATGGAGGTTGCACCACAACCGACGAACGGTGACA
ACAGCAGTGGTAGGAGCAGAATAGACTCCAATGCCTCGTCAGACTGGGAC
GAGTGGGCGGACGCTATGGTAGCTCAAGGCGAATTCTCGGGAGAGTCGGC
GGCGGCCGGAAGAGCACCGGGAGGAGGGGTAGGAGGAGGCGGAGGAGGAG
GCATGGCTGTCGACGAACAAGACGAGGAATGGGTTCGATCCTTGATGGAG
CAGGGCACCGTTGGTTCCGTCATCGAAGGCATGGAAAGCCCTGCTTGGGA
CTACGTGTTGCAGATGGTGGTGGAGGAGAGAGAGGTTAGACGCGCGGACG
GGGTACGAGGCGCGTTGCGCAATCTTCGTGTGTGCCGGAAGTCACGAATT
ACGCCGCATTTCGTGATGACGACCGTGATGATAGTACGGACCCACGACGG
TTGTAGCCTACCTCTGTTGCTCCGCGATACGAGCTAAGTCAGTTGTAGAC
ACCGCCGTGCCTGGTGTTTCGTTATAACAAAAAACAAACATGTCAGTGTC
GTCGATAACATACGTCTCTCTTTGCCCTTGCCCGTCGCTCGGCTGGACCC
AAACCACCACAACAGCGAGGCGGGGCGGCGACTGTGGGATCCCCGGCGCA
GGAGATAGCGGGCGTGGCCGCCACCGAATTCGTCTCCCGATGGCTCCGTA
GCAACCTACCGATCACACTACCCGCGCTCAACGCCCTCACGCTCATCGAA
GGCAGCTGCGCGCAGCAGCACCACCGAATTGAGAACAGAAGCGGTGACGG
CCAAGAGCAACGACGCGTGCGTGGTTGGAGGGCGTTGGCCGACTCTGTTG
CGGAGCCATCTTCCGTGGCCGTGGTTTCCTGCTCCCCGGAGCAGGGCATG
TAAGAGTGGAATAATTTGAGATGGCTGCGACGACGGGAGGGTGGCGTGGT
TGCATTGCCGCAAGACGATTGTCTTTTCATCGTACCGTCTGCTCATCTTC
CTCCAGTTCGTGAGCAGAACGCTGCTGTTTTGGCCGTGGCAAGAAAAACC
CTCTCCCTCCAGAATTCGCTGCGCCTGCCTGTGAGCTGTCCCGTAGCTGC
TAAAACACCACCGCCGTAGCTGTTGAAACACGCGCTACTCGACTCGCTCG
AGCTCGTAGAGTGGTGCTTCTTGTCGTAGAGGTGCCCTTTTTCGGCGTTG
CATCTGCAGCCATCCCGCTATACCGATCCTATCTCGGCCCCCAACACCAA
CGCTCCCACGTTTCCAGGCACCGTGTCAACCTGTTCAGTCTAGGCGCCAA
CTCAGGCGCAGCTCTCGCCGCCGCCGTCGTGCAACCCGGGGCGGTCGGGC
TTCTAGTCCCGGCGGTGGGGGCGGCGGCGTTGGGTGAGAAAACCGTGGCC
GGGGGTTACAACAGCAACGACACCAGAGGAAGCACGGGCGAGGTTTCGGG
GAGACGGTCGACGGGGCCAGGGTGCAGCGATCGTGGGGTCGTGTTCGAGT
CCTTGGACTCGAGGATTTTGGAGGACGCCCTAGTTTCGGCGATGAGGAGG
CTCGGACTTGGTGTCAAGAATCGATCGAGGTGTGTCGTAGAGGGGAGGAG
GTCGCAGTGTTCCAAGTGGTGTAGGCGGTATGCGTTTGGTCCTTGGTGTG
CTTGCCCTAGCGCCTGAATGTTGAGCCAAGCCATACCCACCGCATGTCGA
ATGTCGATGCATGTATGTTGTGTGCGTTCTATTAGCTGGATTGGACGTTT
CGTCCTTGTGATCTGCCATCCTGCCTGTATGGGGCGTGATTTCCTGCTCG
TCTTCTCGGTCGGATTTCGGCAATGGCCATCTTGCGGCAACTCGCTGAGA
GTAGCAGCGTTCGAGGTTCCCCTGAAGCGCCGGCCGCTGTGCTTGGTGAA
ACTAGTCTCCACGATCTCTTGACGGTCGTCAGTACGCATAGGGAAAAGTA
CCCAGACACCGTTGGTTGACTACTGCTAGCAACACAACAGCTTGCCCAAC
GTTCCACGGGAATCGTCGATCACGTCCGTGAGCCCCCTTGTTTGGCCGGC
CGGCCGCCCTTCGTGCCTTACGTATACATGCCCTAGTGGATGGGGTTGCA
TGCGGAAAAGAGACGTGTCGTGAACCCAAAGTGGACCTGTTTGTCGGAAC
AGCTTTTCCCACGAAAAAAATGAACAACACATAAACGTAGTCTGCTGAAG
AGCACTTATTTCCTCGTATCTCGAGCAGGAGCGGGATGTGGAAGCTTCGA
CCCGGCGCCGTGCTACCCGCCGGCGATACCTCGATAACATCGGTAAGGGA
TTGCTGTGCGTTCCCACCATAAAAACTCACGAAAACATGGACCGCGTGTC
GTTTTGTTTGTGGCTTTTCCCGGTTTGAAGTGACGAGCGCATCTCGAACG
GGCAGTCTATCTTTGATTGTATGCAAATCTTGTGTAACATTTGCGTCGAA
AAACACCCGCTTCCCGTCCCTGTTTGGCGTCCTATTTGTCCAGGCGGAAG
TGAGACCCGTCACCCTCGAAGATGCGGGCTTCATCGCCCGCTGCTGCTCC
AGTGGACTCGGGGGGGTCGGTAGATCAGAGGCACTGGTGCGTGGTCTGAT
TGGCCGAAACCCTTCCGCCGGAATTCGGAGAGGAAGTCAGCTCAGAGCGT
GGTGAGTGTGTGCGTCCGTAGCCGGTACAAAACGTAGTGGCCGTATGTAT
GGATTCAAGTGGAAGGCCTTTGGAGGGGTCGCTTTGGAAGGGACACATAT
GCGCGAACGCATGGACTCACTCAAGTACATGCGAAAAATCGACAATTTTC
TTTCCGTCGGTGCATGTTCATTGGCCAGCCACGTGACTAGACTCGAGCCA
ATGTTATTGTGGAAAAGAAGGAAAGGAACGCCTTGTGCGGCTTGGGAACA
CCAGACGTGCCATTTACCACTGCACTTCATACCACTGCACTTCATCTTGT
AGAAAAGAAGCTACCTTGGCCTTGAAGTTTTCAACAGACGACCAAACACG
TACACGTGCAAACCGGGCGCGAACCAGCACCTCCTTCCATCTGTCAACAC
CCAAAACAACCTGCCGCAGGTGTCTTTCTTTCGACAACGGACTGGCCGGA
ACCCTTCACATCGCCCCCCAGACGACAGAGTCGGGCATCCCCCTTCCTAT
TCTTCCACCCCTTGCAAGCGGAGGAGAAGAAGAGGGACAATTCTCGCCGC
GAAATATGGTCCTGGCTCTCCTGGGGTCGCTGTTGGCTCGGTCACCCGGC
ACCGATTGCGCCGCAAATGACACAACTACCGCTCCCACGGACGACGAAGC
AACACGGTCTTTTTCAGATGTGACATCGAGCACGGAGGAGCAACAAGTGG
GCCTCTCAGGCTCATCGTTGGCGCATGGCCGCGGTGCCGGTGGCGGCGTT
AGCGTTGGCTTGGAGGCCGTTGTGGTTGACGACGATTCGCCGTTCGTTGG
CCTCTTCGGGGAGCTGGAATTATTTGAGAGGGTGTGCGATGCGGATTGGG
TTCGATTTGAACCTCTTGCTAGCTGCACCAGCGGCGCCAGCGGAGTGCCG
GCAGTGGTGGCGCCGGTACCCTTGTCAGCGTTGGTGTTGAATCCTTGATG
TATTTGCGATTCTTGTGCTATCACTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5863:125..3800-

>mRNA_Ecto-sp13_S_contig5863.16359.1 ID=mRNA_Ecto-sp13_S_contig5863.16359.1|Name=mRNA_Ecto-sp13_S_contig5863.16359.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1734bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5863:125..3800- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGAAAACGGCAACCACAAACGGCAGCGAATGTCACCGCCACCGAC
TCCCGATATTGACGATATGGAGGTTGCACCACAACCGACGAACGGTGACA
ACAGCAGTGGTAGGAGCAGAATAGACTCCAATGCCTCGTCAGACTGGGAC
GAGTGGGCGGACGCTATGGTAGCTCAAGGCGAATTCTCGGGAGAGTCGGC
GGCGGCCGGAAGAGCACCGGGAGGAGGGGTAGGAGGAGGCGGAGGAGGAG
GCATGGCTGTCGACGAACAAGACGAGGAATGGGTTCGATCCTTGATGGAG
CAGGGCACCGTTGGTTCCGTCATCGAAGGCATGGAAAGCCCTGCTTGGGA
CTACGTGTTGCAGATGGTGGTGGAGGAGAGAGAGCGAGGCGGGGCGGCGA
CTGTGGGATCCCCGGCGCAGGAGATAGCGGGCGTGGCCGCCACCGAATTC
GTCTCCCGATGGCTCCGTAGCAACCTACCGATCACACTACCCGCGCTCAA
CGCCCTCACGCTCATCGAAGGCAGCTGCGCGCAGCAGCACCACCGAATTG
AGAACAGAAGCGGTGACGGCCAAGAGCAACGACGCGTGCGTGGTTGGAGG
GCGTTGGCCGACTCTGTTGCGGAGCCATCTTCCGTGGCCGTGGTTTCCTG
CTCCCCGGAGCAGGGCATGCACCGTGTCAACCTGTTCAGTCTAGGCGCCA
ACTCAGGCGCAGCTCTCGCCGCCGCCGTCGTGCAACCCGGGGCGGTCGGG
CTTCTAGTCCCGGCGGTGGGGGCGGCGGCGTTGGGTGAGAAAACCGTGGC
CGGGGGTTACAACAGCAACGACACCAGAGGAAGCACGGGCGAGGTTTCGG
GGAGACGGTCGACGGGGCCAGGGTGCAGCGATCGTGGGGTCGTGTTCGAG
TCCTTGGACTCGAGGATTTTGGAGGACGCCCTAGTTTCGGCGATGAGGAG
GCTCGGACTTGGTGTCAAGAATCGATCGAGCAGGAGCGGGATGTGGAAGC
TTCGACCCGGCGCCGTGCTACCCGCCGGCGATACCTCGATAACATCGGCG
GAAGTGAGACCCGTCACCCTCGAAGATGCGGGCTTCATCGCCCGCTGCTG
CTCCAGTGGACTCGGGGGGGTCGGTAGATCAGAGGCACTGGTGCGTGGTC
TGATTGGCCGAAACCCTTCCGCCGGAATTCGGAGAGGAAGTCAGCTCAGA
GCGTGGTGTCTTTCTTTCGACAACGGACTGGCCGGAACCCTTCACATCGC
CCCCCAGACGACAGAGTCGGGCATCCCCCTTCCTATTCTTCCACCCCTTG
CAAGCGGAGGAGAAGAAGAGGGACAATTCTCGCCGCGAAATATGGTCCTG
GCTCTCCTGGGGTCGCTGTTGGCTCGGTCACCCGGCACCGATTGCGCCGC
AAATGACACAACTACCGCTCCCACGGACGACGAAGCAACACGGTCTTTTT
CAGATGTGACATCGAGCACGGAGGAGCAACAAGTGGGCCTCTCAGGCTCA
TCGTTGGCGCATGGCCGCGGTGCCGGTGGCGGCGTTAGCGTTGGCTTGGA
GGCCGTTGTGGTTGACGACGATTCGCCGTTCGTTGGCCTCTTCGGGGAGC
TGGAATTATTTGAGAGGGTGTGCGATGCGGATTGGGTTCGATTTGAACCT
CTTGCTAGCTGCACCAGCGGCGCCAGCGGAGTGCCGGCAGTGGTGGCGCC
GGTACCCTTGTCAGCGTTGGTGTTGAATCCTTGA
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