mRNA_Ecto-sp13_S_contig5856.16344.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5856.16344.1
Unique NamemRNA_Ecto-sp13_S_contig5856.16344.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5856.16344.1 vs. uniprot
Match: D7FSB5_ECTSI (Dice1/dead/H box polypeptide, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB5_ECTSI)

HSP 1 Score: 386 bits (992), Expect = 1.620e-121
Identity = 199/207 (96.14%), Postives = 200/207 (96.62%), Query Frame = 2 
Query:  305 HASLVAAFVIDTSASMSQKTSDGRSLLDHAKDMVEQLTVKSRHTPAHHVLLTNCLLLTTEEWPANVKTSWADWGDKPEKRLARFHEQLRNLEPRGQNAVAPSLGKAFELLGQHRLSSGVDTWGKGRSPWRTEAGAVILITDGKNATAGTTADNGMAMXXXXXXXMPTAASMLSMEAIGQGASRAVGGELCGKPYRWDQRLFTVILGG 925
            HASLVAAFVIDTSASMSQKTSDGRSLLDHAKDMVEQLTVKSRHTPAHHVLLTNCLLLTTEE PAN+KTSWADWGDKPEKRLARFHEQLRNLEPRGQNAVAPSLGKAFELLGQHRLSSGVDTWGKGRSPWRTEAGAVILITDG NATAG TADNGMAM XXXX  MPTAASMLSMEAIGQGAS AVGGELCGKPYRWDQRLFTVILGG
Sbjct:    9 HASLVAAFVIDTSASMSQKTSDGRSLLDHAKDMVEQLTVKSRHTPAHHVLLTNCLLLTTEECPANIKTSWADWGDKPEKRLARFHEQLRNLEPRGQNAVAPSLGKAFELLGQHRLSSGVDTWGKGRSPWRTEAGAVILITDGNNATAGMTADNGMAMGXXXX--MPTAASMLSMEAIGQGASGAVGGELCGKPYRWDQRLFTVILGG 213
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BLAST of mRNA_Ecto-sp13_S_contig5856.16344.1 vs. uniprot
Match: A0A8J1Y828_OWEFU (Ofus.G19323 protein n=2 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1Y828_OWEFU)

HSP 1 Score: 117 bits (292), Expect = 1.710e-25
Identity = 72/201 (35.82%), Postives = 103/201 (51.24%), Query Frame = 2 
Query:  317 VAAFVIDTSASMSQKTSDGRSLLDHAKDMVEQLTVKSRHTPAHHVLLTNCLLLTTEEWPANVKTSWADWGDKPEKRLARFHEQLRNLEPRGQNAVAPSLGKAFELLGQHRLSSGVDTWGKGRSPWRTEAGAVILITDGKNATAGTTADNGMAMXXXXXXXMPTAASMLSMEAIGQGASRAVGGELCGKPYRWDQRLFTVIL 919
            V  F++DTSASM+Q+T  G SLLD AK  VE         PA    +   +LLT E+ PAN+K  W +           F ++L+NLE  G +AV PSL  AF+LL  +R+  G+DT+G G+ P+  E   +I ITDG+  T+ T     + +                        +   G EL  +P+RWDQRLF+++L
Sbjct:    3 VIVFLVDTSASMNQRTYLGTSLLDVAKSAVETFMKFRSRDPASR--MDRYMLLTFEDPPANIKAGWKE-------SHTTFVDKLKNLEALGLSAVGPSLKHAFDLLNVNRMHLGIDTYGMGKCPYYLEPAVIICITDGRKLTSMTGVQQDLNLPMN---------------------TTVPGNELTKEPFRWDQRLFSIVL 173
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BLAST of mRNA_Ecto-sp13_S_contig5856.16344.1 vs. uniprot
Match: F4QCA2_CAVFA (Type A von Willebrand factor domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QCA2_CAVFA)

HSP 1 Score: 114 bits (286), Expect = 1.070e-24
Identity = 73/203 (35.96%), Postives = 108/203 (53.20%), Query Frame = 2 
Query:  314 LVAAFVIDTSASMSQKTSDGRSLLDHAKDMVEQ-LTVKSRHTPAHHVLLTNCLLLTTEEWPANVKTSWADWGDKPEKRLARFHEQLRNLEPRGQNAVAPSLGKAFELLGQHRLSSGVDTWGKGRSPWRTEAGAVILITDGKNATAGTTADNGMAMXXXXXXXMPTAASMLSMEAIGQGASRAVGGELCGKPYRWDQRLFTVIL 919
            ++  FV+DTS SM QKTS+G +LLD AK  +E  L ++S+ T           L+TTEE P  VK  W D           F ++L+NL+P+  + +  SL KAF+ L Q R+ S +D +G GR+PW  E   V+L+TDG     G    NG+                  ++ I    S+  GG+L  +PYRW+Q+LF+++L
Sbjct:    1 MLITFVVDTSGSMGQKTSNGMTLLDCAKAAIEHFLKIRSKDTQIFRN--DRYFLITTEECPQAVKIGWRD-------NFNSFLQELKNLQPKDLSNIPYSLVKAFDHLNQFRIQSLIDNYGLGRNPWFIEPAVVVLLTDG-----GAQNSNGL------------------LDNIQIPKSQLSGGDLTIEPYRWEQKLFSLVL 171
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BLAST of mRNA_Ecto-sp13_S_contig5856.16344.1 vs. uniprot
Match: A0A1W0WPV8_HYPDU (Integrator complex subunit 6-A n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0WPV8_HYPDU)

HSP 1 Score: 112 bits (281), Expect = 4.800e-24
Identity = 68/201 (33.83%), Postives = 106/201 (52.74%), Query Frame = 2 
Query:  317 VAAFVIDTSASMSQKTSDGRSLLDHAKDMVEQLTVKSRHTPAHHVLLTNCLLLTTEEWPANVKTSWADWGDKPEKRLARFHEQLRNLEPRGQNAVAPSLGKAFELLGQHRLSSGVDTWGKGRSPWRTEAGAVILITDGKNATAGTTADNGMAMXXXXXXXMPTAASMLSMEAIGQGASRAVGGELCGKPYRWDQRLFTVIL 919
            +  F++D S SMSQ+++ G S LD AK  VE         PAH   L   +L+T +E P ++K  W +        L  F  +L+N++P   +  +  L  AFELL  +RL SG+DT+G+GR+P+  E+  +IL++DG   +                    T+ S L++      +++  G EL  +PYRWDQRLF+V+L
Sbjct:    3 IILFIVDNSISMSQRSNAGTSFLDVAKKAVETFMKLRARDPAHR--LDRIMLMTFDEPPTHLKVGWRE-------SLMVFQNELKNMQPTAMSTGSQILSAAFELLNVNRLQSGIDTYGQGRNPFYLESSVIILLSDGHTFS--------------------TSQSELAITM----SNKIAGLELTMEPYRWDQRLFSVVL 170
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BLAST of mRNA_Ecto-sp13_S_contig5856.16344.1 vs. uniprot
Match: A0A0B7AIB3_9EUPU (VWFA domain-containing protein n=2 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7AIB3_9EUPU)

HSP 1 Score: 112 bits (280), Expect = 6.380e-24
Identity = 75/201 (37.31%), Postives = 112/201 (55.72%), Query Frame = 2 
Query:  317 VAAFVIDTSASMSQKTSDGRSLLDHAKDMVEQLTVKSRHTPAHHVLLTNCLLLTTEEWPANVKTSWADWGDKPEKRLARFHEQLRNLEPRGQNAVAPSLGKAFELLGQHRLSSGVDTWGKGRSPWRTEAGAVILITDGKNATAGTTADNGMAMXXXXXXXMPTAASMLSMEAIGQGASRAVGGELCGKPYRWDQRLFTVIL 919
            +  F++DTSASM+Q+T  G +L+D AK  VE   +KSR   A+       +LLT E+ PANVK  W       E  L  F  +L+NL+  G +++  SL  AF+LL  +R++SG++T+G+GRSP+  E+  +I+ITDG + T                      AS + ME      S   G EL  +P+RWDQR+F+++L
Sbjct:    3 IILFLVDTSASMNQRTYLGTALIDVAKAAVESF-MKSRSRDANS-RWDRYMLLTFEDPPANVKAGWK------ESHLT-FASELKNLKAYGLSSMGSSLKHAFDLLNLNRMTSGIETYGQGRSPFYNESTVIIVITDGGHLTT---------------------ASGIQMELNLPMNSVVPGAELTKEPFRWDQRIFSLVL 173
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BLAST of mRNA_Ecto-sp13_S_contig5856.16344.1 vs. uniprot
Match: A0A2C9KGT4_BIOGL (VWFA domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9KGT4_BIOGL)

HSP 1 Score: 111 bits (278), Expect = 8.230e-24
Identity = 74/201 (36.82%), Postives = 110/201 (54.73%), Query Frame = 2 
Query:  317 VAAFVIDTSASMSQKTSDGRSLLDHAKDMVEQLTVKSRHTPAHHVLLTNCLLLTTEEWPANVKTSWADWGDKPEKRLARFHEQLRNLEPRGQNAVAPSLGKAFELLGQHRLSSGVDTWGKGRSPWRTEAGAVILITDGKNATAGTTADNGMAMXXXXXXXMPTAASMLSMEAIGQGASRAVGGELCGKPYRWDQRLFTVIL 919
            +  F++DTSASM+Q+T  G +L+D AK  VE   +KSR            +LLT E+ PANVK  W +           F  +L+NL+  G +++ PSL  AF+LL  +R++SG+DT+G+GRSP+  E+  +I+ITDG + T      NG+                L M       S   G EL  +P+RWDQR+F+V++
Sbjct:    3 IILFLVDTSASMNQRTYLGTALIDVAKAAVENF-MKSRSRDGSS-RWDRYMLLTFEDPPANVKAGWKE-------SHMTFASELKNLKASGLSSLGPSLKHAFDLLNLNRMTSGIDTYGQGRSPFYNESTIIIVITDGGHLTT----PNGIQTELN-----------LPMN------SGIPGAELTKEPFRWDQRIFSVVM 173
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BLAST of mRNA_Ecto-sp13_S_contig5856.16344.1 vs. uniprot
Match: A0A3S1HCP7_ELYCH (VWFA domain-containing protein (Fragment) n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1HCP7_ELYCH)

HSP 1 Score: 111 bits (278), Expect = 1.230e-23
Identity = 74/201 (36.82%), Postives = 114/201 (56.72%), Query Frame = 2 
Query:  317 VAAFVIDTSASMSQKTSDGRSLLDHAKDMVEQLTVKSRHTPAHHVLLTNCLLLTTEEWPANVKTSWADWGDKPEKRLARFHEQLRNLEPRGQNAVAPSLGKAFELLGQHRLSSGVDTWGKGRSPWRTEAGAVILITDGKNATAGTTADNGMAMXXXXXXXMPTAASMLSMEAIGQGASRAVGGELCGKPYRWDQRLFTVIL 919
            +  F++DTSASM+Q+T  G +L+D AK  VE   +KSR   A+       +LLT E+ PANVK  W       E  L  F  +L+NL   G +++ PSL  AF+LL  +R++SG++T+G+GRSP+  E+  +I+ITDG + T      +G+                L M ++  GA      EL  +P+RWDQR+F++++
Sbjct:   48 IILFLVDTSASMNQRTYLGTALIDVAKAAVENF-MKSRSRDANS-RWDRYMLLTFEDPPANVKAGWK------ESHLT-FASELKNLRASGLSSLGPSLKHAFDLLNLNRMTSGIETYGQGRSPFYNESTVIIVITDGGHLTT----QSGIQSELN-----------LPMNSVVPGA------ELTKEPFRWDQRIFSLVM 218
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BLAST of mRNA_Ecto-sp13_S_contig5856.16344.1 vs. uniprot
Match: UPI001CF4FF6D (integrator complex subunit 6-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF4FF6D)

HSP 1 Score: 111 bits (277), Expect = 1.680e-23
Identity = 71/202 (35.15%), Postives = 106/202 (52.48%), Query Frame = 2 
Query:  314 LVAAFVIDTSASMSQKTSDGRSLLDHAKDMVEQLTVKSRHTPAHHVLLTNCLLLTTEEWPANVKTSWADWGDKPEKRLARFHEQLRNLEPRGQNAVAPSLGKAFELLGQHRLSSGVDTWGKGRSPWRTEAGAVILITDGKNATAGTTADNGMAMXXXXXXXMPTAASMLSMEAIGQGASRAVGGELCGKPYRWDQRLFTVIL 919
            ++  FV+DTSASM+Q+TS G +LLD AK+ VE  T   +   A        +L+T EE P  +K  W +         A F  +L+NL+  G + +  SL +AF+LL  +RL SG+D +G GR+P+  E   V+ ITDG   ++     NG+         +P   ++              G EL  +P+RWDQRLF++IL
Sbjct:   10 VIFVFVVDTSASMNQRTSVGTTLLDVAKNAVETFTKLRQRDQASRT--DRYMLVTLEEPPGAIKAGWRE-------NQATFMNELKNLQATGLSTLGTSLKEAFDLLNLYRLHSGIDNYGMGRNPFYVEPALVVCITDGSKLSS----QNGV----HEELHLPMHTTL-------------PGHELTTEPFRWDQRLFSIIL 181
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BLAST of mRNA_Ecto-sp13_S_contig5856.16344.1 vs. uniprot
Match: UPI000359CBCA (integrator complex subunit 6 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359CBCA)

HSP 1 Score: 109 bits (273), Expect = 5.420e-23
Identity = 73/201 (36.32%), Postives = 113/201 (56.22%), Query Frame = 2 
Query:  317 VAAFVIDTSASMSQKTSDGRSLLDHAKDMVEQLTVKSRHTPAHHVLLTNCLLLTTEEWPANVKTSWADWGDKPEKRLARFHEQLRNLEPRGQNAVAPSLGKAFELLGQHRLSSGVDTWGKGRSPWRTEAGAVILITDGKNATAGTTADNGMAMXXXXXXXMPTAASMLSMEAIGQGASRAVGGELCGKPYRWDQRLFTVIL 919
            +  F++DTSASM+Q+T  G +L+D AK  VE   +KSR   A        +LLT E+ PANVK  W       E  L  F  +L+NL   G +++ PSL  AF+LL  +R++SG++T+G+GRSP+  E+  +I+ITDG + T     ++G+                L M ++        G EL  +P+RWDQR+F++++
Sbjct:    3 IILFLVDTSASMNQRTYLGTALIDVAKAAVESF-MKSRSRDASS-RWDRYMLLTFEDPPANVKAGWK------ESHLT-FASELKNLRASGLSSLGPSLKHAFDLLNLNRMTSGIETYGQGRSPFYNESTIIIVITDGGHLTT----NSGIQTELN-----------LPMNSV------VPGTELTKEPFRWDQRIFSLVM 173
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BLAST of mRNA_Ecto-sp13_S_contig5856.16344.1 vs. uniprot
Match: A0A0T6B998_9SCAR (VWA domain-containing protein (Fragment) n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6B998_9SCAR)

HSP 1 Score: 102 bits (255), Expect = 5.840e-23
Identity = 66/203 (32.51%), Postives = 102/203 (50.25%), Query Frame = 2 
Query:  317 VAAFVIDTSASMSQKTSDG--RSLLDHAKDMVEQLTVKSRHTPAHHVLLTNCLLLTTEEWPANVKTSWADWGDKPEKRLARFHEQLRNLEPRGQNAVAPSLGKAFELLGQHRLSSGVDTWGKGRSPWRTEAGAVILITDGKNATAGTTADNGMAMXXXXXXXMPTAASMLSMEAIGQGASRAVGGELCGKPYRWDQRLFTVIL 919
            +  F+IDTSASM Q+T  G   +LLD AK  VE      + +P   +     +LLT EE P N+K  W +        LA F  +L+NL+      +  ++ +AF++L  +R++SG+DT+G+GR P+  E   ++LITDG   ++     NG+          P                   G EL  +P+RWDQR+F ++L
Sbjct:    3 IIVFLIDTSASMFQRTYVGGRTTLLDVAKSAVETFVKIRQKSPESRI--DRYMLLTFEEQPNNIKAGWKE-------NLATFMNELKNLQCYSMTTMGIAVKQAFDILNVNRMTSGIDTYGQGRCPYFLETSVIVLITDGGKLSS----VNGLHEEFNLPMNSPIP-----------------GSELTREPFRWDQRMFALVL 175
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5856.16344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSB5_ECTSI1.620e-12196.14Dice1/dead/H box polypeptide, putative n=1 Tax=Ect... [more]
A0A8J1Y828_OWEFU1.710e-2535.82Ofus.G19323 protein n=2 Tax=Owenia fusiformis TaxI... [more]
F4QCA2_CAVFA1.070e-2435.96Type A von Willebrand factor domain-containing pro... [more]
A0A1W0WPV8_HYPDU4.800e-2433.83Integrator complex subunit 6-A n=1 Tax=Hypsibius d... [more]
A0A0B7AIB3_9EUPU6.380e-2437.31VWFA domain-containing protein n=2 Tax=Arion vulga... [more]
A0A2C9KGT4_BIOGL8.230e-2436.82VWFA domain-containing protein n=1 Tax=Biomphalari... [more]
A0A3S1HCP7_ELYCH1.230e-2336.82VWFA domain-containing protein (Fragment) n=1 Tax=... [more]
UPI001CF4FF6D1.680e-2335.15integrator complex subunit 6-like n=2 Tax=Acropora... [more]
UPI000359CBCA5.420e-2336.32integrator complex subunit 6 n=1 Tax=Aplysia calif... [more]
A0A0T6B998_9SCAR5.840e-2332.51VWA domain-containing protein (Fragment) n=1 Tax=O... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5856contigEcto-sp13_S_contig5856:194..3303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score389.4
Seed ortholog evalue1.1e-105
Seed eggNOG ortholog2880.D7FSB5
Preferred nameINTS6
Model size927
KEGG koko:K13143,ko:K13180
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0003674,GO:0004888,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005856,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009301,GO:0009987,GO:0010467,GO:0015629,GO:0016070,GO:0016073,GO:0016180,GO:0016591,GO:0018130,GO:0019438,GO:0023052,GO:0030880,GO:0031123,GO:0031974,GO:0031981,GO:0032039,GO:0032774,GO:0032991,GO:0034470,GO:0034472,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0038023,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055029,GO:0060089,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons4
EggNOG free text desc.snRNA processing
EggNOG OGsKOG3768@1,KOG3768@2759
Cds size657
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463813.0414045-CDS-Ecto-sp13_S_contig5856:193..4491681463813.0414045-CDS-Ecto-sp13_S_contig5856:193..449Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5856 194..449 -
1681463813.0594153-CDS-Ecto-sp13_S_contig5856:1154..12711681463813.0594153-CDS-Ecto-sp13_S_contig5856:1154..1271Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5856 1155..1271 -
1681463813.0768118-CDS-Ecto-sp13_S_contig5856:1579..18631681463813.0768118-CDS-Ecto-sp13_S_contig5856:1579..1863Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5856 1580..1863 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463813.0878444-UTR-Ecto-sp13_S_contig5856:1863..19001681463813.0878444-UTR-Ecto-sp13_S_contig5856:1863..1900Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5856 1864..1900 -
1681463813.101047-UTR-Ecto-sp13_S_contig5856:3072..33031681463813.101047-UTR-Ecto-sp13_S_contig5856:3072..3303Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5856 3073..3303 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5856.16344.1prot_Ecto-sp13_S_contig5856.16344.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5856 194..1863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5856.16344.1

>prot_Ecto-sp13_S_contig5856.16344.1 ID=prot_Ecto-sp13_S_contig5856.16344.1|Name=mRNA_Ecto-sp13_S_contig5856.16344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=219bp
MSQQQQQQQQQQHASLVAAFVIDTSASMSQKTSDGRSLLDHAKDMVEQLT
VKSRHTPAHHVLLTNCLLLTTEEWPANVKTSWADWGDKPEKRLARFHEQL
RNLEPRGQNAVAPSLGKAFELLGQHRLSSGVDTWGKGRSPWRTEAGAVIL
ITDGKNATAGTTADNGMAMGMGIGMGMPTAASMLSMEAIGQGASRAVGGE
LCGKPYRWDQRLFTVILGG
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mRNA from alignment at Ecto-sp13_S_contig5856:194..3303-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5856.16344.1 ID=mRNA_Ecto-sp13_S_contig5856.16344.1|Name=mRNA_Ecto-sp13_S_contig5856.16344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3110bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5856:194..3303- (Ectocarpus species13 EcNAP12_S_4_19m)
AGATCACCTTGCCAGGACAACGTCGTGTGCGTTGCGCGTTCGCCGCACGG
TGTTCGCCTATCCCTGCGAGAGCTTGGTCAGTATTAAGCGCGTTGATTGT
GCCCTGCTGAGAGCGGCGTTGAAGAGCACAGGAGCCAGTTCGAGACTGCT
GTCGCCCTCTCGGTGCTGCACAGGCCGCTCGCCGGCAGAAAGGACGTAAG
ACCTGCTCGTGCTGGCCTCCTGTGGACAGGGGTGAGGACTTGGAAGAGGG
GTAGTAAGGGCGTCCGTTCCAAGTACAGCAGGTTGGTGGTGGTGCTTGTG
TTGAGACGAACACCTGAACAATCAGCCGCCGCAAAAAATGGAAATGGAGA
CGTGTGCTCTTCCGATCTTAGACACCAGCCGGGCATCTGATGTAATGTTT
GTTTGGGAGCGAGAGTCTAGACTAAGATGTACCAGGTATAGAGCAGAAGT
ACGACTATTTACCATGTTTGACCGACACATGTTTTCGTATCCACAAGTAA
GGGGTGTTGTCGGGTACAGAGGACCGTGTCTGCAATTGATCTCAACACAC
AGCCTCTCACCCCGCAAAGCACACGGGAGAGCCCCCCTGGCTTTTCGTTC
CAATACATTGTTGTGTACGACAGCAGTGTTGGATTCTACAACACACCCGT
AGTGTTCGGCACCGCGCGCCCAGAGACCGAAAGCAGCGTGCACAGGATCC
CTGCTCTATTATTGGCATGCCATTGCCCGAACATGCTCCCGGTATGATGC
CCGCTCATCATATCAGTTCACTACACGCCATTCTTCGTCAATTGGATGCG
CCAACAAGTACGCAGTGTTCGGTCACGTCTTCCCGTCGTCTTGTCCTAGA
TGCAACCGCCAAGAGGCGGAGAGATAGCGTCCCCCGTAGACTGATGTCAC
AGATTGATTAGACCATAACCAAGCTTGCTCCGATACCAACGATGGTGGTT
AAGAGATATCTCGCCGAGGGCTCTCCGCAGACGTATCGGGCTCTTTCCGC
ACCCACAGCGTTGTGGGGCAATTTTTTTCGCTCTGAATATAACCCAACGA
ATCCCTTCTCTATCTTAGGAAAGAGTCTGAAGATAGATTAGCAATGAATT
TATAGCGTCAGAGACAGCTATTTGAAAGACGGTCGACAGTACACTGGGGG
AGTGCCATCTCTCCGCCTCCTACAGTATTCACATCACCCATCACCGCCCA
CCTTAGTGCTGTAGTCCCGACATCGTCTTGTCTTAGCCCCCAACACCATT
GCCGTGTTATTCGTGATTCGAGCGCGACCAGCAGACCACAACCACGCAGC
GGCAAATTCCTCGAAAATAACGGGTAACAGCACGCATTAATACTAGCGCC
CGCTCACCGTCCCGCTCCGTACGTAACGCTGCTTGACTTTTCTGTGCTGC
AAGATACACGCTAGGTGAACAAATACTCCCCCAGGTCAACATGTCGCAGC
AGCAGCAGCAACAGCAGCAGCAGCAGCATGCCAGCTTGGTAGCCGCCTTC
GTGATCGACACGAGCGCGTCCATGTCCCAGAAGACGTCCGACGGCCGGTC
CCTGCTCGACCACGCCAAGGACATGGTGGAACAGCTCACGGTAAAGAGCA
GACACACGCCCGCGCACCACGTGCTCCTGACAAACTGCCTCCTCCTCACC
ACGGAGGAGTGGCCTGCGAACGTCAAGACGTCGTGGGCGGACTGGGGCGA
CAAGCCGGAGAAGAGGCTGGCGAGGTATGTAGGTGGGGCGGCGGCAATTG
AACGGTCTTCTCTCTCCCCCAGGTGTACGCTTGAGGCATCATGACGGTGA
CGACGTTGATGGTAACCACTTTTGCCTCAACATTGTCCCATCTGCTGTTA
GGGTTGCCGATCCTAGCCGGATCCACGAGCGAGAGAAGCAAGCCTCCTGC
AGCAGTACGCAAGAGGACCGGATACTTGGTCCTATCGTTGTTCAAACATG
GTTCTTCAACACACACGCCATCGGGAGCTCACAACCTTTCTCGGCGTTTT
ACACGGGGGGTGGATGGGCGCGTGTTTCTTAGGTTTCATGAGCAGCTGAG
GAACCTGGAGCCCAGGGGACAGAACGCGGTTGCCCCCTCACTGGGCAAGG
CTTTCGAGCTCTTGGGGCAACATCGCTTAAGCTCGGGAGTGGACACTTGG
TGAGACGCTACTGTGAGTGGACTTCGGAGGGGTCGGTGCAGTGGGCAGTC
CACGACGCCATGCGTGTTCACCAGTAAGTTTTCAAACTACAAACCATGGT
ACACATCACGGTTTGGCATAGATGCGGAAAACTCGGAGTGTTGCAGAGCA
TGTTTCTGCTGCTGCTGTGTTGAGGAGGGTGCACAGCTATGACGAGGTAG
AGAAGCGGGGGGGGGGGCGGGGGAGTTGCTCCCGGACAGTGTTTAAGGAG
CGGAGGACAAAGGCAAGAGAAACCGAACCATCCAATCCAATGCTGTGTCG
ATCTCGACCTACACCAGTCCAAGTGGAAGCGATGACGGCTTTGCCTACAC
CACCGTGACCTTCCTGATCTATACTTCAGATCCAACGCAAGAGGCAATGC
AAAGGCAACAAGTAAGCTTGTCCCTTTTATTTCGTGACATTCCTCCGTCT
CCGTTCTTTATTACCCATCAAGCGTTTTTCACATTAGCCCTTTTCCTCAG
ACAATTGGTACGGTATTGACCAGCGGTGGCATTACCTCCCACGGTCGGTG
TGGCCACTTCCATTCCTCCCTTTCTCCGTGTTCTATAACCATGTCGGATA
ACAACTCTCGACAGGCCTACGATAGTCCTTGTAATAACATTTTTAACCCC
TTCTCTCTCTCTTCCCCCCACCAAAATCCCACCGCCCAACCCTGATACCC
GAAGGGGCAAAGGCCGCAGCCCGTGGCGAACCGAAGCGGGTGCAGTGATC
CTCATCACCGATGGGAAAAACGCCACGGCAGGTACGACCGCGGACAACGG
CATGGCGATGGGCATGGGCATTGGCATGGGCATGCCGACAGCTGCTTCGA
TGCTCAGCATGGAGGCCATCGGGCAGGGAGCAAGCAGGGCGGTGGGCGGC
GAGCTTTGCGGGAAGCCGTACCGATGGGACCAGCGGCTGTTTACGGTCAT
CCTGGGGGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5856:194..3303-

>mRNA_Ecto-sp13_S_contig5856.16344.1 ID=mRNA_Ecto-sp13_S_contig5856.16344.1|Name=mRNA_Ecto-sp13_S_contig5856.16344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=657bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5856:194..3303- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCATGCCAGCTTGGT
AGCCGCCTTCGTGATCGACACGAGCGCGTCCATGTCCCAGAAGACGTCCG
ACGGCCGGTCCCTGCTCGACCACGCCAAGGACATGGTGGAACAGCTCACG
GTAAAGAGCAGACACACGCCCGCGCACCACGTGCTCCTGACAAACTGCCT
CCTCCTCACCACGGAGGAGTGGCCTGCGAACGTCAAGACGTCGTGGGCGG
ACTGGGGCGACAAGCCGGAGAAGAGGCTGGCGAGGTTTCATGAGCAGCTG
AGGAACCTGGAGCCCAGGGGACAGAACGCGGTTGCCCCCTCACTGGGCAA
GGCTTTCGAGCTCTTGGGGCAACATCGCTTAAGCTCGGGAGTGGACACTT
GGGGCAAAGGCCGCAGCCCGTGGCGAACCGAAGCGGGTGCAGTGATCCTC
ATCACCGATGGGAAAAACGCCACGGCAGGTACGACCGCGGACAACGGCAT
GGCGATGGGCATGGGCATTGGCATGGGCATGCCGACAGCTGCTTCGATGC
TCAGCATGGAGGCCATCGGGCAGGGAGCAAGCAGGGCGGTGGGCGGCGAG
CTTTGCGGGAAGCCGTACCGATGGGACCAGCGGCTGTTTACGGTCATCCT
GGGGGGA
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