prot_Ecto-sp13_S_contig5852.16340.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5852.16340.1
Unique Nameprot_Ecto-sp13_S_contig5852.16340.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length319
Homology
BLAST of mRNA_Ecto-sp13_S_contig5852.16340.1 vs. uniprot
Match: Q8QND6_ESV1K (EsV-1-146 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QND6_ESV1K)

HSP 1 Score: 472 bits (1215), Expect = 7.000e-166
Identity = 246/319 (77.12%), Postives = 264/319 (82.76%), Query Frame = 0
Query:    1 MTRWDCDVKLRRGVPCSFPAFHGWPRARQGLLAEDEDLVSSSTAVRRFVFCPACHQWISGHHCCHSPTAPQCESGLNDSGSTCSSGXXXXXXCSKYVVCSDDTPDTYHCHACKGSIHLTYLHEMKEWVYRDCVEHDGEIIHTTCRGVVRKKSTGSIXXXXXXXXTDPDVYVVCSDDAPYTYHCHLCKDRIHLKYRHEIEEWVYRDCVEHDGDILHKTCRDVVFSGSSGSXXXXXXXXXXXXXXXXXXXXCRGSGPSMDSDSGVYVVCTE-DSASSRCHLCYDRVHLKFIHEIDKWVYRDCVELDGKIVHKVCHNLAFDL 318
            MTRWDCDVKLRRGVPCSFPAFHGWPRARQGLLAED  +VSSST VRRFVFCPACHQWISGHHCCHS      ES L+DS STCSS        S+Y+VCSDDTPD YHCHACKG IHLTY  EMKEWVYR+CVEHDGEIIH TCR VVR+  TG           DP VYVVC  D PYTYHCHLC DR+HL+YRHE+EEWVYRDCVEHDG+++HK CRD VFSGSS  XXXXXXXXXXXXXXXXXXXX   S P +DSD+GVYVVCTE DSASSRCHLCYDRVHLKF+ +IDKWVYRDCVELDG+IVHKVC NLAF+L
Sbjct:    1 MTRWDCDVKLRRGVPCSFPAFHGWPRARQGLLAED--IVSSSTTVRRFVFCPACHQWISGHHCCHS------ESVLDDSRSTCSSESRASSGRSEYLVCSDDTPDAYHCHACKGRIHLTYHKEMKEWVYRECVEHDGEIIHKTCRDVVREMLTGGTGSALSM---DPGVYVVCPSDTPYTYHCHLCMDRLHLEYRHEMEEWVYRDCVEHDGEVVHKLCRDAVFSGSSXXXXXXXXXXXXXXXXXXXXXX---SSPLVDSDAGVYVVCTEGDSASSRCHLCYDRVHLKFLRQIDKWVYRDCVELDGEIVHKVCRNLAFEL 305          
BLAST of mRNA_Ecto-sp13_S_contig5852.16340.1 vs. uniprot
Match: D8LPH0_ECTSI (EsV-1-146 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPH0_ECTSI)

HSP 1 Score: 446 bits (1147), Expect = 2.400e-155
Identity = 240/329 (72.95%), Postives = 260/329 (79.03%), Query Frame = 0
Query:    1 MTRWDCDVKLRRGVPCSFPAFHGWPRARQGLLAEDEDLVSSSTAVRRFVFCPACHQWISGHHCCHSPTAPQCESGLNDSGSTCSSGXXXXXXCSKYVVCSDDTPDTYHCHACKGSIHLTYLHEMKEWVYRDCVEHDGEIIHTTCRGVVRKK---STGSIXXXXXXXXTDPDVYVVCSDDAPYTYHCHLCKDRIHLKYRHEIEEWVYRDCVEHDGDILHKTCRDVVF---SGSSGSXXXXXXXXXXXXXXXXXXXXCRG----SGPSMDSDSGVYVVCTE-DSASSRCHLCYDRVHLKFIHEIDKWVYRDCVELDGKIVHKVCHNLAFDL 318
            MTRWDCDV+L RGVPCSFPAFHGWP ARQGLLA+   LVS       FVFCPACHQWISGHHCCHS +    ESGL+DSGSTCSS        S+YVVCSDDTPDTY CHACKG IHLTYL E+K WVYR+CVEH GEI+H TCR V R+K   S GS          DPDVYVVCS+ AP TYHCHLC+DRIHL+YRHEIEEWVYRDCVEHDG+ILHK CRD+VF   SGSSGS   XXXXXXXXXXXXXXXXX       S P +DS++GVYVVCTE DSASSRC LCY+RVHLKF+ EIDKWVYRDCVELDG+IVHKVC NLAFDL
Sbjct:    1 MTRWDCDVRLHRGVPCSFPAFHGWPDARQGLLADG--LVS-------FVFCPACHQWISGHHCCHSESP---ESGLDDSGSTCSSDSRDWSSRSEYVVCSDDTPDTYFCHACKGRIHLTYLKEIKAWVYRECVEHKGEIMHKTCRDVGREKFPDSPGSTGSNGSTRSKDPDVYVVCSNHAPDTYHCHLCQDRIHLQYRHEIEEWVYRDCVEHDGEILHKACRDLVFGDSSGSSGSGGFXXXXXXXXXXXXXXXXXXXXXXXHSEPLVDSEAGVYVVCTERDSASSRCRLCYERVHLKFLQEIDKWVYRDCVELDGEIVHKVCRNLAFDL 317          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5852.16340.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QND6_ESV1K7.000e-16677.12EsV-1-146 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPH0_ECTSI2.400e-15572.95EsV-1-146 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5852contigEcto-sp13_S_contig5852:6949..7905 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5852.16340.1mRNA_Ecto-sp13_S_contig5852.16340.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5852 6949..7905 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5852.16340.1 ID=prot_Ecto-sp13_S_contig5852.16340.1|Name=mRNA_Ecto-sp13_S_contig5852.16340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=319bp
MTRWDCDVKLRRGVPCSFPAFHGWPRARQGLLAEDEDLVSSSTAVRRFVF
CPACHQWISGHHCCHSPTAPQCESGLNDSGSTCSSGSSGSSGCSKYVVCS
DDTPDTYHCHACKGSIHLTYLHEMKEWVYRDCVEHDGEIIHTTCRGVVRK
KSTGSIGSIGSTGSTDPDVYVVCSDDAPYTYHCHLCKDRIHLKYRHEIEE
WVYRDCVEHDGDILHKTCRDVVFSGSSGSSGSSGSSAPSGCSGCSGSGGC
RGSGPSMDSDSGVYVVCTEDSASSRCHLCYDRVHLKFIHEIDKWVYRDCV
ELDGKIVHKVCHNLAFDL*
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