mRNA_Ecto-sp13_S_contig5852.16339.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5852.16339.1
Unique NamemRNA_Ecto-sp13_S_contig5852.16339.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5852.16339.1 vs. uniprot
Match: D8LPG9_ECTSI (EsV-1-143 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPG9_ECTSI)

HSP 1 Score: 296 bits (757), Expect = 2.620e-98
Identity = 162/245 (66.12%), Postives = 191/245 (77.96%), Query Frame = 1 
Query:    1 MNHFQAGGVSPNPHGSAYPAVQTNYPANLFTQMQMLKAFSKSSDSYSSSSSKISIVKYDDHFKKKGADFCHDRLQLEKPNPNTQPGA-PSHIRLTKEELKDNPPLALKFGDNDCQIVLPIPSYKAMCKAAEKMISDYLSHSNLGSSKDTKKQAADAISQMLLQNFVRECGYGDESLNQACYDKGVVDIPNESQAQQKQRLINAASA---ADRPAVASDYDAAAPGDMVGGA---GAQEAKVQPYR 714
            MN F  GGVSPNP G+AYPAVQ     N+F QMQML AF+KSSDSYSSSSSK+SIVKYDDHFKKKGADFC+D+L+L+K NP   PGA P  +R++KEELK+NPPLALKFGD DC IVLPIPSYKAMCKAAE M+ DYLSH+ +G++  +KK+AADAISQMLL NFV +CGYGD++L+ ACYD GV  IPNE+Q +QK RLI  A +    D   V +DYDAA  GD+VG A   G QE KV  Y+
Sbjct:    1 MNQFLPGGVSPNPQGTAYPAVQPM--GNMFAQMQMLNAFNKSSDSYSSSSSKVSIVKYDDHFKKKGADFCYDKLKLKKLNPT--PGATPRLVRISKEELKENPPLALKFGDKDCHIVLPIPSYKAMCKAAEIMVRDYLSHAGIGTTSASKKEAADAISQMLLVNFVEQCGYGDDALDAACYDAGVKTIPNETQDEQKTRLIAEAESITLGDGVGVGTDYDAADVGDLVGHASRTGGQEGKVPNYK 241
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BLAST of mRNA_Ecto-sp13_S_contig5852.16339.1 vs. uniprot
Match: Q8QKX9_ESV1K (EsV-1-143 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKX9_ESV1K)

HSP 1 Score: 294 bits (753), Expect = 1.170e-97
Identity = 160/246 (65.04%), Postives = 191/246 (77.64%), Query Frame = 1 
Query:    1 MNHFQAGGVSPNPHGSAYPAVQT----NYPANLFTQMQMLKAFSKSSDSYSSSSSKISIVKYDDHFKKKGADFCHDRLQLEKPNPNTQPGAPSHIRLTKEELKDNPPLALKFGDNDCQIVLPIPSYKAMCKAAEKMISDYLS-HSNLGSSKDTKKQAADAISQMLLQNFVRECGYGDESLNQACYDKGVVDIPNESQAQQKQRLINAASAA---DRPAVASDYDAAAPGDMVGGAGAQEAKVQPYR 714
            MN FQ GGVSPNP G+AYPA+Q+    N+  N+F QMQM+KAF+KSSDSYSSSSSK+SIVKYDDHFKK GADFC+D L+L K   N   GAP   RL+KEELK+NPPLALKFGD DC IVLPIPSYKAMCKAA+KM+ DYL+ H +LG +  +KK+AADAIS+MLL+NFV +CGYGD+ L+ ACYDKGVVD+P+E+Q  QK+RL+  A AA     P VA++YD A  GD VG   A E KV  YR
Sbjct:    1 MNPFQPGGVSPNPQGTAYPAIQSTGMSNF-GNMFAQMQMIKAFNKSSDSYSSSSSKVSIVKYDDHFKKNGADFCYDTLKLTKNGVNAA-GAPISTRLSKEELKENPPLALKFGDKDCHIVLPIPSYKAMCKAADKMVRDYLNRHPSLGVTSASKKEAADAISKMLLKNFVEQCGYGDDELDPACYDKGVVDVPDETQEDQKKRLVADAEAATPGSGPGVAANYDTADVGDPVGRTAAPEDKVPDYR 244
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5852.16339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPG9_ECTSI2.620e-9866.12EsV-1-143 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QKX9_ESV1K1.170e-9765.04EsV-1-143 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5852contigEcto-sp13_S_contig5852:4395..5132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size738
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-143
Ec32 orthologEc-06_005420.1
Cds size738
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463812.7007616-CDS-Ecto-sp13_S_contig5852:4394..51321681463812.7007616-CDS-Ecto-sp13_S_contig5852:4394..5132Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5852 4395..5132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5852.16339.1prot_Ecto-sp13_S_contig5852.16339.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5852 4395..5132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5852.16339.1

>prot_Ecto-sp13_S_contig5852.16339.1 ID=prot_Ecto-sp13_S_contig5852.16339.1|Name=mRNA_Ecto-sp13_S_contig5852.16339.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=246bp
MNHFQAGGVSPNPHGSAYPAVQTNYPANLFTQMQMLKAFSKSSDSYSSSS
SKISIVKYDDHFKKKGADFCHDRLQLEKPNPNTQPGAPSHIRLTKEELKD
NPPLALKFGDNDCQIVLPIPSYKAMCKAAEKMISDYLSHSNLGSSKDTKK
QAADAISQMLLQNFVRECGYGDESLNQACYDKGVVDIPNESQAQQKQRLI
NAASAADRPAVASDYDAAAPGDMVGGAGAQEAKVQPYRDQTAALI*
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mRNA from alignment at Ecto-sp13_S_contig5852:4395..5132+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5852.16339.1 ID=mRNA_Ecto-sp13_S_contig5852.16339.1|Name=mRNA_Ecto-sp13_S_contig5852.16339.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5852:4395..5132+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATCATTTTCAAGCCGGTGGTGTTTCCCCGAACCCTCACGGTAGTGC
CTACCCTGCAGTACAAACGAATTATCCTGCCAACTTGTTTACGCAGATGC
AAATGCTGAAGGCGTTTTCGAAGTCGTCAGATTCGTACTCGTCGTCCAGC
TCCAAGATCTCCATCGTCAAGTACGACGACCACTTCAAGAAAAAAGGGGC
AGACTTTTGTCACGATAGACTCCAACTCGAAAAGCCTAATCCGAATACCC
AGCCCGGTGCCCCCTCCCACATCAGACTTACCAAAGAAGAACTGAAGGAC
AACCCTCCTCTCGCGCTCAAGTTCGGCGACAATGACTGCCAGATCGTCCT
ACCTATCCCCTCGTACAAAGCCATGTGCAAGGCCGCGGAAAAAATGATCT
CGGATTACTTGAGCCACTCTAATTTAGGGTCATCGAAAGATACAAAAAAG
CAAGCCGCCGATGCTATATCGCAGATGTTGCTTCAGAACTTTGTTCGAGA
ATGTGGCTACGGCGACGAATCGTTGAATCAAGCGTGTTACGATAAAGGTG
TCGTGGACATACCCAATGAATCACAAGCACAACAGAAACAAAGACTTATC
AATGCGGCCTCTGCTGCTGATAGACCAGCTGTAGCCAGTGACTATGATGC
AGCCGCCCCAGGCGACATGGTCGGTGGCGCAGGCGCGCAAGAAGCTAAAG
TACAACCATATAGGGATCAAACCGCTGCATTGATTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5852:4395..5132+

>mRNA_Ecto-sp13_S_contig5852.16339.1 ID=mRNA_Ecto-sp13_S_contig5852.16339.1|Name=mRNA_Ecto-sp13_S_contig5852.16339.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5852:4395..5132+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATCATTTTCAAGCCGGTGGTGTTTCCCCGAACCCTCACGGTAGTGC
CTACCCTGCAGTACAAACGAATTATCCTGCCAACTTGTTTACGCAGATGC
AAATGCTGAAGGCGTTTTCGAAGTCGTCAGATTCGTACTCGTCGTCCAGC
TCCAAGATCTCCATCGTCAAGTACGACGACCACTTCAAGAAAAAAGGGGC
AGACTTTTGTCACGATAGACTCCAACTCGAAAAGCCTAATCCGAATACCC
AGCCCGGTGCCCCCTCCCACATCAGACTTACCAAAGAAGAACTGAAGGAC
AACCCTCCTCTCGCGCTCAAGTTCGGCGACAATGACTGCCAGATCGTCCT
ACCTATCCCCTCGTACAAAGCCATGTGCAAGGCCGCGGAAAAAATGATCT
CGGATTACTTGAGCCACTCTAATTTAGGGTCATCGAAAGATACAAAAAAG
CAAGCCGCCGATGCTATATCGCAGATGTTGCTTCAGAACTTTGTTCGAGA
ATGTGGCTACGGCGACGAATCGTTGAATCAAGCGTGTTACGATAAAGGTG
TCGTGGACATACCCAATGAATCACAAGCACAACAGAAACAAAGACTTATC
AATGCGGCCTCTGCTGCTGATAGACCAGCTGTAGCCAGTGACTATGATGC
AGCCGCCCCAGGCGACATGGTCGGTGGCGCAGGCGCGCAAGAAGCTAAAG
TACAACCATATAGGGATCAAACCGCTGCATTGATTTAA
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