mRNA_Ecto-sp13_S_contig5846.16326.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5846.16326.1
Unique NamemRNA_Ecto-sp13_S_contig5846.16326.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5846.16326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5846contigEcto-sp13_S_contig5846:1..4578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1020
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionDnaJ domain
Ec32 orthologEc-24_001530.1
Cds size1020
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5846.16326.1prot_Ecto-sp13_S_contig5846.16326.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5846 1..4578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463811.859894-CDS-Ecto-sp13_S_contig5846:0..1171681463811.859894-CDS-Ecto-sp13_S_contig5846:0..117Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5846 1..117 -
1681463811.871205-CDS-Ecto-sp13_S_contig5846:1331..14341681463811.871205-CDS-Ecto-sp13_S_contig5846:1331..1434Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5846 1332..1434 -
1681463811.8827329-CDS-Ecto-sp13_S_contig5846:1646..17571681463811.8827329-CDS-Ecto-sp13_S_contig5846:1646..1757Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5846 1647..1757 -
1681463811.8939915-CDS-Ecto-sp13_S_contig5846:2497..25541681463811.8939915-CDS-Ecto-sp13_S_contig5846:2497..2554Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5846 2498..2554 -
1681463811.9050124-CDS-Ecto-sp13_S_contig5846:3125..34401681463811.9050124-CDS-Ecto-sp13_S_contig5846:3125..3440Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5846 3126..3440 -
1681463811.9160657-CDS-Ecto-sp13_S_contig5846:3696..39031681463811.9160657-CDS-Ecto-sp13_S_contig5846:3696..3903Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5846 3697..3903 -
1681463811.9269483-CDS-Ecto-sp13_S_contig5846:4468..45781681463811.9269483-CDS-Ecto-sp13_S_contig5846:4468..4578Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5846 4469..4578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5846.16326.1

>prot_Ecto-sp13_S_contig5846.16326.1 ID=prot_Ecto-sp13_S_contig5846.16326.1|Name=mRNA_Ecto-sp13_S_contig5846.16326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=340bp
MFAAQDWDMLSEGMIGVLEHEAKERASNRDAIATLRRRSMRKSTGKNNEA
ATCSAPAKREAKPTQHATRGATGVAQTTDVSETATTKRSERRIRRLRSLP
GSAPRYTPTPGPSDSLPPRRRNSIGIDASPSVGSSGATVENNTISSNHPP
PSSPPASGNGGGDLEKTGVGGVSAFWPSSGEGVGERRREGRRRRGVLPDV
VMTDATPAKLSCGYCRKLFRVQILDRHEERCPSRNLDLFATPCVACGLQG
PRCACWALRNGLLKEARTEPDKPLFALFKNSRGGRTPERQQPVPVDGSYT
KRASGFLGGWKAGEGIRRPVPLMEGDDVCGPDGDYDFQGR
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mRNA from alignment at Ecto-sp13_S_contig5846:1..4578-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5846.16326.1 ID=mRNA_Ecto-sp13_S_contig5846.16326.1|Name=mRNA_Ecto-sp13_S_contig5846.16326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4578bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5846:1..4578- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGCCGCGCAAGACTGGGACATGCTGTCGGAGGGAATGATTGGTGT
GCTGGAGCACGAGGCCAAGGAGAGGGCGTCCAACCGAGATGCTATTGCGA
CTCTGAGAAGGTATTGCTCGTTGTTGGGCGGGCACGATGGAAACACCATG
CGGCGGAATTTGTTGGTGATATTCACCTTTCCTCTCACAACGCGCCCACC
TGACCTTTCGTTGCCCCAAGCTTCTACAAGAACGCAAAAAATGTTTAGAA
CGTCTAGTCACCAATGTGCCGAGCGTTTTGGATAGATTGCCAGGGTAGGT
GTATATCGGAGTACCACGCGTGCACATAGATGGTGCGTGCTACGTGCATA
AATACCGTACTGTAGTCTACACGTGCAATCCATGACAGTTGTGATGCACA
CATTTCACCAACAGCGGCATGCGCGTGAACATCATGATGACGCGCGCATG
AACCTGTGCTTCGGAGAGCCTTGAGCGACGGAGAAGCCTGTGCTGATACT
GTGAATCAAGGAAGGGCGACCTGTCGGGAGCTCGGTCTCATGGCGATCAA
CGTTCTCCTGGATGCAACATTAAACGAGTGAACGACCTCGTGTTCTTGAC
CCACCGTCGATTCGATGTTGCCTTGTTCTCCTCTGATGCTGCGTTTTCTG
TCTCACCTTCCGGGTTGACCGCTAGACGATCCATGCGAAAATCGACCGGC
AAGAACAACGAAGCCGCTACATGTTCTGCTCCAGCCAAACGGGAAGCCAA
ACCAACGCAGCACGCCACACGAGGAGCCACCGGAGTAGCACAGACGACGG
ATGTCAGCGAAACTGCAACTACGAAGCGTTCGGAGCGGCGAATCAGGAGG
CTTAGGTCTCTTCCTGGTAGCGCCCCAAGGTAGTGAACCTTTGAACAGCA
ACGTGTCGTGCTTAAGTCGGCATTCCATTCAAGTTCGTTCCGTGGATTGA
TCAACTCTGATTCATTCCGCTAGAGGGATGGCAACCACTATGTAGGCCCT
GACCCTTGATGATGGAATTGTTATGCCTCCTTCCCTCCAACAAAAGTACA
GTAGAATCCACCGGAGAGATTGGTGTGTGGATATCTGTGGACAAGCATTA
TGACTGAAGCCTTCTCGGTCTTTCGTCTCACATCTCAGCACACCAACACC
GGGTCCTTCAGACTCCCTCCCTCCCCGCCGAAGGAATAGCATCGGTATCG
ATGCTAGCCCTAGCGTGGGTAGCTCGGGCGCTACCGTCGAGAACAACACC
ATCAGTAGCAACCATCCGCCACCGTCATCGCCGCCGGCGTCTGGAAACGG
TGGCGGAGATCTGGAGAAAACAGGGGTCGGGGGGGTGTCAGCTTTCTGGC
CATCTTCTGGTGAGGGTGTTGGCGAGCGGCGACGGGAGGGCCGCCGAAGG
AGGGGCGTTCTCCCAGACGTGGTTATGACCGACGCAACGCCGGCTAAGCT
TAGGTAGGCAGCCGTTGGCCGCCCACACGCGAGCTTTTGAGCTCACATAA
ACGTAGCAATTAGCTGCAACATACACAAGAGGGAAAGCAACGAGCTCTTT
GACCATAGGTCGGAGCACTCGCCCAAGCAGATCGCGGAATGCATGTTGGC
TTCGCGACCAAGAGACTTCTAGACCACGTTCCACATGTTACCTGGTGGGT
CTCATTTACTTCCCCCAACGACCCTAGCCAAGCGCCAAAAAATCTAGTTG
GTTCTACCACACAACTATGAGTAAACGCTGTGTAGGTCGCAAGGTGCATG
GTGTGCGCTCCAGCTGTGGCTACGCCGACGCCTGTTGTGGCAAACACAGA
CGCCCCGACACACAACGGGATCATGTCGGAGTACTATTTCAGAGTATCAC
TTCGGAGCGGGGGAGGTGTGACATCAATGGAACCATCACTTGCCGGGCCC
TACCTGAAGTGCTTGATGGAAAATGGAAGAGAGGATTGTGTCATGGACAC
TCTGTTTGAAAACATCCGCATACACAACTTCCTGAGCTCCTCTACCCCTC
CTTTGTCTGATTGTGGCCGGGCAGTTGCGGGTACTGCCGGAAGCTTTTTC
GCGTCCAAATTCTCGACCGACACGAAGAAAGGTGAGCAAGAACAAATGCA
TCAAGAACGCAGTGTGCCAACCAGCTCGTTGCGTTAATGTTGCGATTTCT
TGCGTTTGCTACAAACTACGACTACTCCGGAGTGGGCTGCCTTGTTAGGG
TATTGGTGTCATCCGTATTGGCATCGTCCGTTGGTGTTTCATATGTAGTC
CTCCTGAGCGTTTAGAAGAGTTGTACACTTCGGCGCGGGGTACCTCCATA
TTTTTTTAACTTTGGTGCCCCCAAAAGCTCAAGGGCAACGTCGTAGCAGG
ACCAATCTTATCTCGTTGCGGCGACTGGCTTGGATACGCAGAGAAGGAAC
TTCAAGCATCGCTTTTTTGAGACGAGTCCCAAGATCAAGAATCAATGGAA
CATTTGAAGCATTAGTACCAAAGTGGGTTGTCGCCCCTGCTGGGCCAACT
TTCCATACGGAGAATAGATGACGAATCATCATCAGAATTGCTTGACTCCT
GTTGTTTGATCCGAAATGTTTTTTTTGCTCCTCCTAGTGGTACAGAACAT
CAAACACGTCGTGACCACAAGAGCCAACCGCTTGCTGCAAAATGACTGCC
GCACGATTCCTCAGTGGGTTTGGGAATACTGTTGAACCACAAGTTCTTCC
ACGAGCCATACGCCGAAGGCTACTGTCGGACACCGTTGGGCTTCCCAAAC
CATGCACATTGTGGTTGTCGTAGCCAATCGAACGCTGCTTAAAAACCCCG
AACCCGCTCGAGGAACCGCAGGTGCCCTTCGAGGAATCTAGACCTGTTCG
CCACGCCATGTGTGGCTTGTGGGCTACAGGGGCCGCGCTGTGCGTGCTGG
GCCCTCCGTAACGGGCTGCTCAAGGAGGCCAGGTAGGGAAGGGCCCAACG
TATCTGCACTCGACACCAAGACATGGTGTTGTGGTGTTTAGTTTGTTGTG
GCTTGGTGGCGTCGGGGGTGGTGGTTCAGAGGTGATGAGGTAAGCTTGGT
GTTGCCAGCGCCGCGTTGCATGTCACCATCGCTGTCTCCGCCGTAACGCA
CGTCGCGACTTCTGTGCTTACAAAGCCGTTGCCAAACTATTCAGGACCGA
GCCTGACAAGCCTCTTTTCGCGCTGTTCAAGAACAGCAGAGGCGGCCGAA
CGCCTGAGCGCCAGCAGCCTGTTCCCGTCGATGGCAGTTACACGAAGGTG
ATGCTTCTGTCGCGATGTCCTTTTCCCCTCTTCTTCTGCCTCCAGAATTG
GGTTAATGTTGTCTGGTTGCGTGGATACTTGCCGCACCGGTTGTTCCCAG
TGGGTATTTATAGGAGAGAGTTATGCTTTCGGAGCCGGGAATCCGCATCT
ATCATCGAGTGGAATGCGCGGAGAACGTGGTTTGGGAAATTGTAAAGCAT
TGTATCCGAAAGCGTAGTAGGAGTATTACAAACGGAACATTGGGCGATTT
CAAAGTGGTGCACTGCAAACAGCCCAACCGTGGAGGTAATAGTGCCATAT
CAACCAAAGGCAAACCTTTGGATTGAAGTGAACAGGGCCTTCCAGATCTG
CGTTTCGCTCGCGCATGCTTGTCTATTCATCGAACTTCCATTACCCGGCG
AACCGTTAATAGTAAATACCAGGGTGTTACCCTCTCTCTCTCGTGCTATT
CAAACCCCCTCTTGCTTTCACACATTTGGCCAGCATCTCTCTTGTATCAC
CTCCCTTCACACCATTTTCAAGCCTCGTTCTCATTAATTCACTTTTCGTA
CGCAAACGTACACGCGCACACCGATTGACAGCCACAAGCCAACCAAATGA
GGAAATGGCGTTGCCGGTGCGACGACTCAGAGACCCTCTGGGTGCAAAGT
TAAACTATTTTGTAGAACCCTTGATGGGCTAGTTGACGACCATCCAACAG
GGCCATTCATCACCAATACGTTTCACGACACAATTGTGTGATAGACCTAT
TTGCTTGTTGGCTTGTAGTTAAAGTAGAGGCTATATTTCATGCGTGAATT
GGTGAGTGGGCTGAGAAATACTATTCATCCCCCCTGCCTCGCCGCAAGTC
GATTACCTAAGAGGTGTCCAACATCTCACTGGTGACGTAAAGTGATCGCG
GGGGGGGGCATCATCTCTACACGAATCCTGATCGTGCGTTGCCTTCGGGA
TAAACATGCACGAGACACAGTTGTGAGCACAGGCTTGCTTCCTCGACTTC
AAACGTTCATTTCATTGGAGCAGCCTTTGGCAAAAATATTCTGATGTTTT
GACAGACTACGATGTTTGTAGTCACAGGGAAACAACCGGTATTCCGAACC
TATTGTTGATAAAATAAACCCACTTCCAATCAATGTCCTGCCTTCTGTTT
TTATTTGTGCCCACTAACGTGTGTGGGGGGTGAATCTTCATTCGGTGCCA
ACCCAACCAAGAGAGCATCGGGCTTTCTGGGCGGGTGGAAGGCTGGAGAA
GGGATACGTCGGCCAGTGCCTTTGATGGAAGGCGATGATGTTTGTGGGCC
TGACGGTGATTACGATTTCCAAGGCCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5846:1..4578-

>mRNA_Ecto-sp13_S_contig5846.16326.1 ID=mRNA_Ecto-sp13_S_contig5846.16326.1|Name=mRNA_Ecto-sp13_S_contig5846.16326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1020bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5846:1..4578- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGCCGCGCAAGACTGGGACATGCTGTCGGAGGGAATGATTGGTGT
GCTGGAGCACGAGGCCAAGGAGAGGGCGTCCAACCGAGATGCTATTGCGA
CTCTGAGAAGACGATCCATGCGAAAATCGACCGGCAAGAACAACGAAGCC
GCTACATGTTCTGCTCCAGCCAAACGGGAAGCCAAACCAACGCAGCACGC
CACACGAGGAGCCACCGGAGTAGCACAGACGACGGATGTCAGCGAAACTG
CAACTACGAAGCGTTCGGAGCGGCGAATCAGGAGGCTTAGGTCTCTTCCT
GGTAGCGCCCCAAGGTACACACCAACACCGGGTCCTTCAGACTCCCTCCC
TCCCCGCCGAAGGAATAGCATCGGTATCGATGCTAGCCCTAGCGTGGGTA
GCTCGGGCGCTACCGTCGAGAACAACACCATCAGTAGCAACCATCCGCCA
CCGTCATCGCCGCCGGCGTCTGGAAACGGTGGCGGAGATCTGGAGAAAAC
AGGGGTCGGGGGGGTGTCAGCTTTCTGGCCATCTTCTGGTGAGGGTGTTG
GCGAGCGGCGACGGGAGGGCCGCCGAAGGAGGGGCGTTCTCCCAGACGTG
GTTATGACCGACGCAACGCCGGCTAAGCTTAGTTGCGGGTACTGCCGGAA
GCTTTTTCGCGTCCAAATTCTCGACCGACACGAAGAAAGGTGCCCTTCGA
GGAATCTAGACCTGTTCGCCACGCCATGTGTGGCTTGTGGGCTACAGGGG
CCGCGCTGTGCGTGCTGGGCCCTCCGTAACGGGCTGCTCAAGGAGGCCAG
GACCGAGCCTGACAAGCCTCTTTTCGCGCTGTTCAAGAACAGCAGAGGCG
GCCGAACGCCTGAGCGCCAGCAGCCTGTTCCCGTCGATGGCAGTTACACG
AAGAGAGCATCGGGCTTTCTGGGCGGGTGGAAGGCTGGAGAAGGGATACG
TCGGCCAGTGCCTTTGATGGAAGGCGATGATGTTTGTGGGCCTGACGGTG
ATTACGATTTCCAAGGCCGG
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