prot_Ecto-sp13_S_contig58434.16323.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig58434.16323.1
Unique Name	prot_Ecto-sp13_S_contig58434.16323.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	125

Homology

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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: A0A6H5K466_9PHAE (Adaptin_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K466_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 3.650e-68
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 0

Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVVQV 125
            +VCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQL+NTQSDNNVKLIVLERLA LKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVVQV
Sbjct:  233 KVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLVNTQSDNNVKLIVLERLAALKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVVQV 357

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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: D7G7C5_ECTSI (Coatomer subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C5_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 1.030e-66
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0

Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVVQV 125
            +VCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVVQV
Sbjct:  233 KVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVVQV 357

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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: A0A835Z7E2_9STRA (Coatomer subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E2_9STRA)

HSP 1 Score: 194 bits (493), Expect = 3.460e-55
Identity = 106/124 (85.48%), Postives = 113/124 (91.13%), Query Frame = 0

Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVVQ 124
            +VCRRDP+QK RFVR+LL MLQS SAAV YEAAWTLVSLS APTAIRAAA TYAQLLN+QSDNNVKLIVLERL  LK+ H KVLQEVLMDILRALSSPN+DICRKTL VAMDLV+PRNIEEVVQ
Sbjct:  238 KVCRRDPAQKGRFVRLLLGMLQSDSAAVCYEAAWTLVSLSSAPTAIRAAAATYAQLLNSQSDNNVKLIVLERLDALKRQHAKVLQEVLMDILRALSSPNIDICRKTLTVAMDLVSPRNIEEVVQ 361

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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: W7TX10_9STRA (Coatomer subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TX10_9STRA)

HSP 1 Score: 187 bits (476), Expect = 7.910e-53
Identity = 101/125 (80.80%), Postives = 116/125 (92.80%), Query Frame = 0

Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVVQV 125
            +VCR+DP+QK+RFVR L ++LQS SAAVSYEAAWTLVSLS APTA+RAAA+TYAQLLN+QSD+NVKLIVLERLA LK+ HT+V+QE LMDILRAL SPN+DICRKTLEVAMDLV+PRNIEEVV V
Sbjct:  242 KVCRKDPAQKARFVRALFNLLQSDSAAVSYEAAWTLVSLSSAPTAVRAAASTYAQLLNSQSDHNVKLIVLERLASLKQGHTRVVQENLMDILRALGSPNLDICRKTLEVAMDLVSPRNIEEVVAV 366

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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: A0A485LCP1_9STRA (Coatomer subunit beta n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCP1_9STRA)

HSP 1 Score: 186 bits (472), Expect = 2.710e-52
Identity = 98/123 (79.67%), Postives = 113/123 (91.87%), Query Frame = 0

Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVV 123
            +VCR DP+QKSRF+R +  +LQS SAAVSYEAAWTLV+LS APTAIRAAA TYA LLN+QSDNNVKLIVL+RLA LKKHHTKVLQEVLMDI+RAL+SPN+DIC+K L++AMDLV+PRNIEEVV
Sbjct:  239 KVCRVDPTQKSRFIRCIFQLLQSSSAAVSYEAAWTLVTLSSAPTAIRAAAKTYAGLLNSQSDNNVKLIVLDRLADLKKHHTKVLQEVLMDIMRALASPNLDICKKVLDIAMDLVSPRNIEEVV 361

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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: A0A6G0WFC7_9STRA (Coatomer subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WFC7_9STRA)

HSP 1 Score: 186 bits (471), Expect = 3.750e-52
Identity = 96/123 (78.05%), Postives = 113/123 (91.87%), Query Frame = 0

Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVV 123
            +VCR DPSQK+RF+R +  +LQS SAAVSYEAAWTLV+LS APTA+RAAA TYA LLN+QSDNNVKL+VL+RLA LKKHHTKVLQEVLMDI+RALSSPN+DIC+K L++AMDLVTPRNI++VV
Sbjct:  237 KVCRVDPSQKARFIRCIFQLLQSSSAAVSYEAAWTLVTLSSAPTAVRAAAKTYAGLLNSQSDNNVKLVVLDRLADLKKHHTKVLQEVLMDIMRALSSPNLDICKKVLDIAMDLVTPRNIDDVV 359

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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: A0A067CTT4_SAPPC (Coatomer subunit beta n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CTT4_SAPPC)

HSP 1 Score: 184 bits (468), Expect = 9.560e-52
Identity = 95/123 (77.24%), Postives = 112/123 (91.06%), Query Frame = 0

Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVV 123
            +VCR DP+QK+RFVR +  +LQS SAAVSYEAAWTLV+LS APTA+RAAA TYA LLN+QSDNNVKLIVL+RLA LKKHHTK+LQEVLMD++RALSSPN+DIC+K LE+AM LV+PRNIEEV+
Sbjct:  237 KVCRADPAQKARFVRCIFQLLQSSSAAVSYEAAWTLVTLSSAPTAVRAAAKTYAGLLNSQSDNNVKLIVLDRLADLKKHHTKILQEVLMDVMRALSSPNLDICKKVLEIAMSLVSPRNIEEVI 359

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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: A0A024TD70_9STRA (Coatomer subunit beta n=12 Tax=Aphanomyces TaxID=100860 RepID=A0A024TD70_9STRA)

HSP 1 Score: 183 bits (465), Expect = 2.430e-51
Identity = 96/123 (78.05%), Postives = 113/123 (91.87%), Query Frame = 0

Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVV 123
            +VCR DP+QK+RF+R +  +LQS SAAVSYEAAWTLV+LS APTA+RAAA TYA LLN+QSDNNVKLIVL+RLA LKKHHTKVLQEVLMDILRALSSPN+DIC+K L++AM+LV+PRNI+EVV
Sbjct:  238 KVCRVDPAQKARFIRCIFQLLQSSSAAVSYEAAWTLVTLSSAPTAVRAAAKTYAGLLNSQSDNNVKLIVLDRLADLKKHHTKVLQEVLMDILRALSSPNLDICKKVLDIAMNLVSPRNIDEVV 360

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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: A0A7S3PVB3_9STRA (Coatomer subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVB3_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.630e-50
Identity = 96/123 (78.05%), Postives = 110/123 (89.43%), Query Frame = 0

Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVV 123
            +VCRRDP+QKSRFVRVLL ML S S +VSYEAAWTLVSLS APTA+RAAA TYA LLN+Q+DNNVK+IVLERL GLKK+HTK+LQE+LMDILRALSSPN DIC+K L+VAMD+V  RN+ EVV
Sbjct:  255 RVCRRDPNQKSRFVRVLLEMLSSNSPSVSYEAAWTLVSLSSAPTAVRAAAVTYANLLNSQNDNNVKMIVLERLDGLKKNHTKILQELLMDILRALSSPNPDICKKVLDVAMDIVNVRNVVEVV 377

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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: A0A8K1C4D7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4D7_PYTOL)

HSP 1 Score: 181 bits (459), Expect = 1.660e-50
Identity = 95/123 (77.24%), Postives = 110/123 (89.43%), Query Frame = 0

Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVV 123
            +VCR+DPSQKSRFVR +  +L S S AVSYEAAWTLV+LS APTA+RAAA TY  LLN+QSDNNVKLIVL+RLA LKKHHTKVLQE+LMDI+RALSSP++DIC+K LE+AMDLV+ RNIEEVV
Sbjct:  253 KVCRQDPSQKSRFVRCIFQLLNSSSPAVSYEAAWTLVTLSSAPTAVRAAAKTYCGLLNSQSDNNVKLIVLDRLADLKKHHTKVLQEILMDIMRALSSPSIDICKKVLEIAMDLVSTRNIEEVV 375

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K466_9PHAE	3.650e-68	97.60	Adaptin_N domain-containing protein n=1 Tax=Ectoca...	[more]
D7G7C5_ECTSI	1.030e-66	99.20	Coatomer subunit beta n=1 Tax=Ectocarpus siliculos...	[more]
A0A835Z7E2_9STRA	3.460e-55	85.48	Coatomer subunit beta n=1 Tax=Tribonema minus TaxI...	[more]
W7TX10_9STRA	7.910e-53	80.80	Coatomer subunit beta n=3 Tax=Monodopsidaceae TaxI...	[more]
A0A485LCP1_9STRA	2.710e-52	79.67	Coatomer subunit beta n=1 Tax=Aphanomyces stellatu...	[more]
A0A6G0WFC7_9STRA	3.750e-52	78.05	Coatomer subunit beta n=1 Tax=Aphanomyces euteiche...	[more]
A0A067CTT4_SAPPC	9.560e-52	77.24	Coatomer subunit beta n=4 Tax=Saprolegniaceae TaxI...	[more]
A0A024TD70_9STRA	2.430e-51	78.05	Coatomer subunit beta n=12 Tax=Aphanomyces TaxID=1...	[more]
A0A7S3PVB3_9STRA	1.630e-50	78.05	Coatomer subunit beta n=1 Tax=Chaetoceros debilis ...	[more]
A0A8K1C4D7_PYTOL	1.660e-50	77.24	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 1..125 e-value: 5.6E-19 score: 69.9
IPR002553	Clathrin/coatomer adaptor, adaptin-like, N-terminal	PFAM	PF01602	Adaptin_N	coord: 2..124 e-value: 5.0E-23 score: 81.4
None	No IPR available	PANTHER	PTHR10635:SF0	COATOMER SUBUNIT BETA	coord: 1..125
IPR016460	Coatomer beta subunit (COPB1)	PANTHER	PTHR10635	COATOMER SUBUNIT BETA	coord: 1..125
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 2..124

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig58434	contig	Ecto-sp13_S_contig58434:107..783 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig58434.16323.1	mRNA_Ecto-sp13_S_contig58434.16323.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig58434 107..783 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig58434.16323.1 ID=prot_Ecto-sp13_S_contig58434.16323.1|Name=mRNA_Ecto-sp13_S_contig58434.16323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAA
TTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNV
DICRKTLEVAMDLVTPRNIEEVVQV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR002553	Clathrin/coatomer_adapt-like_N
IPR016460	COPB1
IPR016024	ARM-type_fold