mRNA_Ecto-sp13_S_contig58434.16323.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58434.16323.1
Unique NamemRNA_Ecto-sp13_S_contig58434.16323.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: A0A6H5K466_9PHAE (Adaptin_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K466_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 3.650e-68
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 1 
Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVVQV 375
            +VCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQL+NTQSDNNVKLIVLERLA LKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVVQV
Sbjct:  233 KVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLVNTQSDNNVKLIVLERLAALKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVVQV 357
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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: D7G7C5_ECTSI (Coatomer subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C5_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 1.030e-66
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 1 
Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVVQV 375
            +VCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVVQV
Sbjct:  233 KVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVVQV 357
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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: A0A835Z7E2_9STRA (Coatomer subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E2_9STRA)

HSP 1 Score: 194 bits (493), Expect = 3.460e-55
Identity = 106/124 (85.48%), Postives = 113/124 (91.13%), Query Frame = 1 
Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVVQ 372
            +VCRRDP+QK RFVR+LL MLQS SAAV YEAAWTLVSLS APTAIRAAA TYAQLLN+QSDNNVKLIVLERL  LK+ H KVLQEVLMDILRALSSPN+DICRKTL VAMDLV+PRNIEEVVQ
Sbjct:  238 KVCRRDPAQKGRFVRLLLGMLQSDSAAVCYEAAWTLVSLSSAPTAIRAAAATYAQLLNSQSDNNVKLIVLERLDALKRQHAKVLQEVLMDILRALSSPNIDICRKTLTVAMDLVSPRNIEEVVQ 361
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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: W7TX10_9STRA (Coatomer subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TX10_9STRA)

HSP 1 Score: 187 bits (476), Expect = 7.910e-53
Identity = 101/125 (80.80%), Postives = 116/125 (92.80%), Query Frame = 1 
Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVVQV 375
            +VCR+DP+QK+RFVR L ++LQS SAAVSYEAAWTLVSLS APTA+RAAA+TYAQLLN+QSD+NVKLIVLERLA LK+ HT+V+QE LMDILRAL SPN+DICRKTLEVAMDLV+PRNIEEVV V
Sbjct:  242 KVCRKDPAQKARFVRALFNLLQSDSAAVSYEAAWTLVSLSSAPTAVRAAASTYAQLLNSQSDHNVKLIVLERLASLKQGHTRVVQENLMDILRALGSPNLDICRKTLEVAMDLVSPRNIEEVVAV 366
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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: A0A485LCP1_9STRA (Coatomer subunit beta n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCP1_9STRA)

HSP 1 Score: 186 bits (472), Expect = 2.710e-52
Identity = 98/123 (79.67%), Postives = 113/123 (91.87%), Query Frame = 1 
Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVV 369
            +VCR DP+QKSRF+R +  +LQS SAAVSYEAAWTLV+LS APTAIRAAA TYA LLN+QSDNNVKLIVL+RLA LKKHHTKVLQEVLMDI+RAL+SPN+DIC+K L++AMDLV+PRNIEEVV
Sbjct:  239 KVCRVDPTQKSRFIRCIFQLLQSSSAAVSYEAAWTLVTLSSAPTAIRAAAKTYAGLLNSQSDNNVKLIVLDRLADLKKHHTKVLQEVLMDIMRALASPNLDICKKVLDIAMDLVSPRNIEEVV 361
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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: A0A6G0WFC7_9STRA (Coatomer subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WFC7_9STRA)

HSP 1 Score: 186 bits (471), Expect = 3.750e-52
Identity = 96/123 (78.05%), Postives = 113/123 (91.87%), Query Frame = 1 
Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVV 369
            +VCR DPSQK+RF+R +  +LQS SAAVSYEAAWTLV+LS APTA+RAAA TYA LLN+QSDNNVKL+VL+RLA LKKHHTKVLQEVLMDI+RALSSPN+DIC+K L++AMDLVTPRNI++VV
Sbjct:  237 KVCRVDPSQKARFIRCIFQLLQSSSAAVSYEAAWTLVTLSSAPTAVRAAAKTYAGLLNSQSDNNVKLVVLDRLADLKKHHTKVLQEVLMDIMRALSSPNLDICKKVLDIAMDLVTPRNIDDVV 359
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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: A0A067CTT4_SAPPC (Coatomer subunit beta n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CTT4_SAPPC)

HSP 1 Score: 184 bits (468), Expect = 9.560e-52
Identity = 95/123 (77.24%), Postives = 112/123 (91.06%), Query Frame = 1 
Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVV 369
            +VCR DP+QK+RFVR +  +LQS SAAVSYEAAWTLV+LS APTA+RAAA TYA LLN+QSDNNVKLIVL+RLA LKKHHTK+LQEVLMD++RALSSPN+DIC+K LE+AM LV+PRNIEEV+
Sbjct:  237 KVCRADPAQKARFVRCIFQLLQSSSAAVSYEAAWTLVTLSSAPTAVRAAAKTYAGLLNSQSDNNVKLIVLDRLADLKKHHTKILQEVLMDVMRALSSPNLDICKKVLEIAMSLVSPRNIEEVI 359
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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: A0A024TD70_9STRA (Coatomer subunit beta n=12 Tax=Aphanomyces TaxID=100860 RepID=A0A024TD70_9STRA)

HSP 1 Score: 183 bits (465), Expect = 2.430e-51
Identity = 96/123 (78.05%), Postives = 113/123 (91.87%), Query Frame = 1 
Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVV 369
            +VCR DP+QK+RF+R +  +LQS SAAVSYEAAWTLV+LS APTA+RAAA TYA LLN+QSDNNVKLIVL+RLA LKKHHTKVLQEVLMDILRALSSPN+DIC+K L++AM+LV+PRNI+EVV
Sbjct:  238 KVCRVDPAQKARFIRCIFQLLQSSSAAVSYEAAWTLVTLSSAPTAVRAAAKTYAGLLNSQSDNNVKLIVLDRLADLKKHHTKVLQEVLMDILRALSSPNLDICKKVLDIAMNLVSPRNIDEVV 360
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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: A0A7S3PVB3_9STRA (Coatomer subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVB3_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.630e-50
Identity = 96/123 (78.05%), Postives = 110/123 (89.43%), Query Frame = 1 
Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVV 369
            +VCRRDP+QKSRFVRVLL ML S S +VSYEAAWTLVSLS APTA+RAAA TYA LLN+Q+DNNVK+IVLERL GLKK+HTK+LQE+LMDILRALSSPN DIC+K L+VAMD+V  RN+ EVV
Sbjct:  255 RVCRRDPNQKSRFVRVLLEMLSSNSPSVSYEAAWTLVSLSSAPTAVRAAAVTYANLLNSQNDNNVKMIVLERLDGLKKNHTKILQELLMDILRALSSPNPDICKKVLDVAMDIVNVRNVVEVV 377
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BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Match: A0A8K1C4D7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4D7_PYTOL)

HSP 1 Score: 181 bits (459), Expect = 1.660e-50
Identity = 95/123 (77.24%), Postives = 110/123 (89.43%), Query Frame = 1 
Query:    1 QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAATTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNVDICRKTLEVAMDLVTPRNIEEVV 369
            +VCR+DPSQKSRFVR +  +L S S AVSYEAAWTLV+LS APTA+RAAA TY  LLN+QSDNNVKLIVL+RLA LKKHHTKVLQE+LMDI+RALSSP++DIC+K LE+AMDLV+ RNIEEVV
Sbjct:  253 KVCRQDPSQKSRFVRCIFQLLNSSSPAVSYEAAWTLVTLSSAPTAVRAAAKTYCGLLNSQSDNNVKLIVLDRLADLKKHHTKVLQEILMDIMRALSSPSIDICKKVLEIAMDLVSTRNIEEVV 375
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58434.16323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K466_9PHAE3.650e-6897.60Adaptin_N domain-containing protein n=1 Tax=Ectoca... [more]
D7G7C5_ECTSI1.030e-6699.20Coatomer subunit beta n=1 Tax=Ectocarpus siliculos... [more]
A0A835Z7E2_9STRA3.460e-5585.48Coatomer subunit beta n=1 Tax=Tribonema minus TaxI... [more]
W7TX10_9STRA7.910e-5380.80Coatomer subunit beta n=3 Tax=Monodopsidaceae TaxI... [more]
A0A485LCP1_9STRA2.710e-5279.67Coatomer subunit beta n=1 Tax=Aphanomyces stellatu... [more]
A0A6G0WFC7_9STRA3.750e-5278.05Coatomer subunit beta n=1 Tax=Aphanomyces euteiche... [more]
A0A067CTT4_SAPPC9.560e-5277.24Coatomer subunit beta n=4 Tax=Saprolegniaceae TaxI... [more]
A0A024TD70_9STRA2.430e-5178.05Coatomer subunit beta n=12 Tax=Aphanomyces TaxID=1... [more]
A0A7S3PVB3_9STRA1.630e-5078.05Coatomer subunit beta n=1 Tax=Chaetoceros debilis ... [more]
A0A8K1C4D7_PYTOL1.660e-5077.24Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58434contigEcto-sp13_S_contig58434:107..783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score227.3
Seed ortholog evalue4.1e-57
Seed eggNOG ortholog2880.D7G7C5
Preferred nameCOPB1
Model size375
KEGG koko:K17301
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000902,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006891,GO:0006955,GO:0007275,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010883,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030133,GO:0030134,GO:0030135,GO:0030137,GO:0030141,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0030667,GO:0030903,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032879,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0034613,GO:0036230,GO:0042119,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0045321,GO:0046903,GO:0046907,GO:0048193,GO:0048471,GO:0048475,GO:0048513,GO:0048568,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060429,GO:0061053,GO:0065007,GO:0065008,GO:0070727,GO:0070820,GO:0070821,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0099503,GO:0101002,GO:0101003,GO:1905952
Exons2
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5096@1,KOG1058@2759
Cds size375
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463811.5118492-CDS-Ecto-sp13_S_contig58434:106..3371681463811.5118492-CDS-Ecto-sp13_S_contig58434:106..337Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58434 107..337 -
1681463811.5229304-CDS-Ecto-sp13_S_contig58434:639..7831681463811.5229304-CDS-Ecto-sp13_S_contig58434:639..783Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58434 640..783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58434.16323.1prot_Ecto-sp13_S_contig58434.16323.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58434 107..783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58434.16323.1

>prot_Ecto-sp13_S_contig58434.16323.1 ID=prot_Ecto-sp13_S_contig58434.16323.1|Name=mRNA_Ecto-sp13_S_contig58434.16323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
QVCRRDPSQKSRFVRVLLSMLQSRSAAVSYEAAWTLVSLSGAPTAIRAAA
TTYAQLLNTQSDNNVKLIVLERLAGLKKHHTKVLQEVLMDILRALSSPNV
DICRKTLEVAMDLVTPRNIEEVVQV
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mRNA from alignment at Ecto-sp13_S_contig58434:107..783-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58434.16323.1 ID=mRNA_Ecto-sp13_S_contig58434.16323.1|Name=mRNA_Ecto-sp13_S_contig58434.16323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=677bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58434:107..783- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTGCCGGCGAGACCCTAGCCAGAAGTCTCGGTTCGTGCGGGTGCT
GCTGTCCATGCTCCAGAGCCGCTCCGCCGCCGTATCCTACGAGGCTGCCT
GGACCCTCGTCAGCCTTAGCGGAGCCCCCACTGCCATCCGGGCGGTGAGA
GATGGGGGGAGAAAGGGAAACAGAGAGGCGGTCATGGGGAGGGAGAGAGA
CGGAGGGAAAGGGGCAGGGAGGAGTGGGAGGAAGACAGACAGACAGACAG
AAGTGATCTCGACCATGGACTTGCATTTCCTCAACCACGCACCACTGCGA
TCGGTGGCGCTTGGCAGGAAAACGAGCGTGTATTGATCGTGTCCGTTCGC
TGGCATCCAAGACATCCAACGCCCAAATTGTTGGGTCGCCCCCGTCACCA
TTGTCAAGGCTGCAAACCATGTTGTTACCCCGCGTGAAAACCCCAGGCGG
CAACGACGTACGCTCAGCTGCTCAACACCCAGAGCGATAATAACGTGAAG
CTCATCGTACTCGAGCGCCTCGCGGGCCTCAAGAAGCACCACACCAAGGT
GCTCCAGGAGGTGCTCATGGACATCCTGCGGGCGCTCTCGAGCCCCAACG
TGGACATCTGCCGCAAGACCCTGGAGGTGGCCATGGACCTAGTCACCCCG
AGAAACATCGAGGAAGTGGTGCAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58434:107..783-

>mRNA_Ecto-sp13_S_contig58434.16323.1 ID=mRNA_Ecto-sp13_S_contig58434.16323.1|Name=mRNA_Ecto-sp13_S_contig58434.16323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58434:107..783- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTGCCGGCGAGACCCTAGCCAGAAGTCTCGGTTCGTGCGGGTGCT
GCTGTCCATGCTCCAGAGCCGCTCCGCCGCCGTATCCTACGAGGCTGCCT
GGACCCTCGTCAGCCTTAGCGGAGCCCCCACTGCCATCCGGGCGGCGGCA
ACGACGTACGCTCAGCTGCTCAACACCCAGAGCGATAATAACGTGAAGCT
CATCGTACTCGAGCGCCTCGCGGGCCTCAAGAAGCACCACACCAAGGTGC
TCCAGGAGGTGCTCATGGACATCCTGCGGGCGCTCTCGAGCCCCAACGTG
GACATCTGCCGCAAGACCCTGGAGGTGGCCATGGACCTAGTCACCCCGAG
AAACATCGAGGAAGTGGTGCAGGTG
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