prot_Ecto-sp13_S_contig5842.16321.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5842.16321.1
Unique Nameprot_Ecto-sp13_S_contig5842.16321.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length706
Homology
BLAST of mRNA_Ecto-sp13_S_contig5842.16321.1 vs. uniprot
Match: D7FNE3_ECTSI (Similar to zinc finger CCCH-type containing 12C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE3_ECTSI)

HSP 1 Score: 358 bits (920), Expect = 1.080e-111
Identity = 297/694 (42.80%), Postives = 310/694 (44.67%), Query Frame = 0
Query:   14 PKMMSVVEAAAKSGDPVAAQEAREAVDGITIEQSGAAGGHAEGTSLETSGPTPEELHGETGHSLQTASSVQRNDGDHGIGNNGNDGRTGSDIGTEGTGESAASHDPPLLQPAAEADQEAYLTGGRDERLTWKRSPSGGXXXXXXXSFPLPLETPANDVSTSADGIGGVAGDHASTDTKGKCQGGQEEPLPTRSGGVVRARWRARWGPPPPEPVQRSRFSAPVDGGGDRPRXXXXXXXXXXXXXXXXXXXXXXXEKGREQEDRHLPLRVPSPPSSRLSARIDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQEDLHIPLQAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPPRXXXXXXXXXXXXXXXXXAKLQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVSSIPRXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAGKGKKRQRPGEGGSWSGGKRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTCGXXXXXXXXXXXXXXXXXQEGDTTAPQARREVAATGGGG--VLGAQSSPAGDFGGGSSQGPLEGSSHNDCKRRCNTVPPTAVGCTSTNAVSASPGTTLVAIDGSNVAFAFSDGSMGEKRWSFRGPSAAIQFFKRRGIPCVIFVPNWRMSTLTRNDECYPEFEEALRSGEICRVPANKNDDLFILR 705
            PKMMSVVEAAA SGDPVAAQEAREAVDGITIEQSGAAGGHAEGTS+ETSGPT EEL GETGH LQTA+SVQ NDG +G GNNG+DGR GSDIGTEGT +SA  HDPPLL  AAEADQEAYLT GRDERLTWKRSPSG XXXXXXX                                                                           P  G G   +                                        PP          X                               + +D                                                                                                                                             + R+  GE G   G +R                               TCG        XXXXXXXXXQEGDTTAPQARRE          VLGA   PAGD+GGGSSQGPLE SSHND KRRCN VPP A GCTS+NAVSASPGTTLVAIDGSNVAFAFSDGSMGEKRWSFRGPSAAIQFFKRRGIPCVIFVPNWRMSTLTRNDECYPEFEEALRSGEICRVPANKNDDLFILR
Sbjct:   88 PKMMSVVEAAANSGDPVAAQEAREAVDGITIEQSGAAGGHAEGTSIETSGPTLEELQGETGHPLQTAASVQSNDGHNG-GNNGSDGRAGSDIGTEGTRDSAVLHDPPLLLLAAEADQEAYLTAGRDERLTWKRSPSGXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------------XXXXXXXRPEGGSGXXXQ----------------------------------------PPGXXXXXXXXXX-------------------------------DNDD---------------------------------------------------------------------------------------------------------------------------------------------RGRRWSGESGQGQGDRR-------------------------------TCGDQEAGERGXXXXXXXXXQEGDTTAPQARREXXXXXXXXXXVLGAHGRPAGDYGGGSSQGPLEDSSHNDRKRRCNAVPPAAAGCTSSNAVSASPGTTLVAIDGSNVAFAFSDGSMGEKRWSFRGPSAAIQFFKRRGIPCVIFVPNWRMSTLTRNDECYPEFEEALRSGEICRVPANKNDDLFILR 485          
BLAST of mRNA_Ecto-sp13_S_contig5842.16321.1 vs. uniprot
Match: A0A6H5J5R4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5R4_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 7.850e-20
Identity = 84/131 (64.12%), Postives = 89/131 (67.94%), Query Frame = 0
Query:  468 VAGKGKKRQRPGEGGSWSGGKRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTCGXXXXXXXXXXXXXXXXXQEGDTTAPQARREVAATGGGGVLGAQSSPAGDFGGGSSQGPLEGSSHNDCKRRCNTVP 598
            +AG GKKRQRP EGGSWSGG+ PXXXXXXXXXXXXXXXXXX           R  G                  +GDT APQARRE AA G GGVLGA S  AG++GGGSSQGPLEGSSHND KRRCNTVP
Sbjct:    1 MAGTGKKRQRP-EGGSWSGGQPPXXXXXXXXXXXXXXXXXX-----------RWSGERG---------------QGDTMAPQARREAAAAGSGGVLGAHSRRAGEYGGGSSQGPLEGSSHNDGKRRCNTVP 104          
BLAST of mRNA_Ecto-sp13_S_contig5842.16321.1 vs. uniprot
Match: A0A6H5JA30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA30_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 5.450e-14
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0
Query:   14 PKMMSVVEAAAKSGDPVAAQEAREAVDGITIEQSGAAGGHAEGTSLETSGP 64
            PKM SVVEAAA SGDPVAAQEARE VDGITIEQSGAAGG++EGTSLETS P
Sbjct:   69 PKMTSVVEAAADSGDPVAAQEAREVVDGITIEQSGAAGGYSEGTSLETSCP 119          
BLAST of mRNA_Ecto-sp13_S_contig5842.16321.1 vs. uniprot
Match: A0A6H5KK30_9PHAE (RNase NYN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK30_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.930e-8
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 0
Query:  619 VAIDGSNVAFAFSDGSMGEKRWSFRGPSAAIQFFKRRGIPCVIFVPNWRMSTLTRNDECYPEFEEALRSGEICRVPANKNDDLFILR 705
            V IDG++VA     G+ G+  WS +G   AIQFF+RRG+PCV F+P  RM+ ++  D C   F+EA   G I  +P  +  DL IL+
Sbjct:  664 VVIDGNDVALCHR-GAHGQ--WSAQGALLAIQFFERRGVPCVAFLPRERMAGVSPRDGCNTAFQEARAKGAINEIPRGEKADLSILK 747          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5842.16321.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FNE3_ECTSI1.080e-11142.80Similar to zinc finger CCCH-type containing 12C n=... [more]
A0A6H5J5R4_9PHAE7.850e-2064.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA30_9PHAE5.450e-1488.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK30_9PHAE1.930e-843.68RNase NYN domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 311..332
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 351..367
score: 42.35
coord: 337..349
score: 58.46
coord: 398..419
score: 42.73
coord: 378..390
score: 44.62
NoneNo IPR availableGENE3D3.40.50.11980coord: 617..705
e-value: 2.4E-11
score: 45.6
IPR021869Ribonuclease Zc3h12a-like, NYN domainPFAMPF11977RNase_Zc3h12acoord: 618..677
e-value: 4.1E-5
score: 23.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5842contigEcto-sp13_S_contig5842:1111..8758 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5842.16321.1mRNA_Ecto-sp13_S_contig5842.16321.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5842 1111..8758 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5842.16321.1 ID=prot_Ecto-sp13_S_contig5842.16321.1|Name=mRNA_Ecto-sp13_S_contig5842.16321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=706bp
PPPPPPALPSPFLPKMMSVVEAAAKSGDPVAAQEAREAVDGITIEQSGAA
GGHAEGTSLETSGPTPEELHGETGHSLQTASSVQRNDGDHGIGNNGNDGR
TGSDIGTEGTGESAASHDPPLLQPAAEADQEAYLTGGRDERLTWKRSPSG
GGGGGGGSSFPLPLETPANDVSTSADGIGGVAGDHASTDTKGKCQGGQEE
PLPTRSGGVVRARWRARWGPPPPEPVQRSRFSAPVDGGGDRPRQQQQLDH
HHHEQQQQQQQPQQQREKGREQEDRHLPLRVPSPPSSRLSARIDGGGGSS
HQQQQLDYHHKQQQQQQQQQQQREKRREQEDLHIPLQAPTPIPTPKPTPS
PLPRTPTPAQQPPPPPPPQPPRPLASTPTPAKLQPPPSPAKLQAPPPPPP
PPPPPPPLVPKTTTTRLPPAPPPPPPPPPPPPSVSSIPRPPPPPPPPPPP
PLSSTPLPLPPPAPIPAVAGKGKKRQRPGEGGSWSGGKRPDGQRPNGDDD
HDNDDQGRRWSGESGQGDRRTCGDQQAGERGGGERESSQRQEGDTTAPQA
RREVAATGGGGVLGAQSSPAGDFGGGSSQGPLEGSSHNDCKRRCNTVPPT
AVGCTSTNAVSASPGTTLVAIDGSNVAFAFSDGSMGEKRWSFRGPSAAIQ
FFKRRGIPCVIFVPNWRMSTLTRNDECYPEFEEALRSGEICRVPANKNDD
LFILR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021869RNase_Zc3h12_NYN