prot_Ecto-sp13_S_contig58386.16314.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig58386.16314.1
Unique Nameprot_Ecto-sp13_S_contig58386.16314.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length38
Homology
BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: A0A835ZK06_9STRA (Ribosomal protein S11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK06_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.670e-10
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0
Query:    1 MRATGGNKTKTPGPGAQSALRALARAGMKV 30
            MRATGGNKTKTPGPGAQSALRALARAGMK+
Sbjct:   94 MRATGGNKTKTPGPGAQSALRALARAGMKI 123          
BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: D7FYS4_ECTSI (40S ribosomal protein S14 n=3 Tax=Sar TaxID=2698737 RepID=D7FYS4_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 5.990e-10
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0
Query:    1 MRATGGNKTKTPGPGAQSALRALARAGMKV 30
            MRATGGNKTKTPGPGAQSALRALARAGMK+
Sbjct:   97 MRATGGNKTKTPGPGAQSALRALARAGMKI 126          
BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: A0A6A2X9C2_HIBSY (40S ribosomal protein S14 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2X9C2_HIBSY)

HSP 1 Score: 57.0 bits (136), Expect = 6.400e-10
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 0
Query:    1 MRATGGNKTKTPGPGAQSALRALARAGMKV 30
            +RATGGNKTKTPGPGAQSALRALAR+GMK+
Sbjct:    6 LRATGGNKTKTPGPGAQSALRALARSGMKI 35          
BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: RS14_TOBAC (40S ribosomal protein S14 (Fragment) n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=RS14_TOBAC)

HSP 1 Score: 57.0 bits (136), Expect = 7.370e-10
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 0
Query:    1 MRATGGNKTKTPGPGAQSALRALARAGMKV 30
            +RATGGNKTKTPGPGAQSALRALAR+GMK+
Sbjct:   12 LRATGGNKTKTPGPGAQSALRALARSGMKI 41          
BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: A0A2U1MX59_ARTAN (Uncharacterized protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MX59_ARTAN)

HSP 1 Score: 57.0 bits (136), Expect = 8.310e-10
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 0
Query:    1 MRATGGNKTKTPGPGAQSALRALARAGMKV 30
            +RATGGNKTKTPGPGAQSALRALAR+GMK+
Sbjct:   17 LRATGGNKTKTPGPGAQSALRALARSGMKI 46          
BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: A0A2U1PPJ3_ARTAN (Ribosomal protein S11 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PPJ3_ARTAN)

HSP 1 Score: 57.0 bits (136), Expect = 1.010e-9
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 0
Query:    1 MRATGGNKTKTPGPGAQSALRALARAGMKV 30
            +RATGGNKTKTPGPGAQSALRALAR+GMK+
Sbjct:   43 LRATGGNKTKTPGPGAQSALRALARSGMKI 72          
BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: A0A7J8PGG2_GOSRA (Uncharacterized protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A7J8PGG2_GOSRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.160e-9
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 0
Query:    1 MRATGGNKTKTPGPGAQSALRALARAGMKV 30
            +RATGGNKTKTPGPGAQSALRALAR+GMK+
Sbjct:   31 LRATGGNKTKTPGPGAQSALRALARSGMKI 60          
BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: UPI001C4B88AD (40S ribosomal protein S14-like n=1 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4B88AD)

HSP 1 Score: 58.2 bits (139), Expect = 1.190e-9
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0
Query:    1 MRATGGNKTKTPGPGAQSALRALARAGMKV 30
            +RATGGNKTKTPGPGAQSALRALARAGMK+
Sbjct:   38 LRATGGNKTKTPGPGAQSALRALARAGMKI 67          
BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: A0A8J5F7Y5_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F7Y5_ZINOF)

HSP 1 Score: 58.2 bits (139), Expect = 1.290e-9
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0
Query:    1 MRATGGNKTKTPGPGAQSALRALARAGMKV 30
            +RATGGNKTKTPGPGAQSALRALARAGMK+
Sbjct:   97 LRATGGNKTKTPGPGAQSALRALARAGMKI 126          
BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: A0A0E0NFZ0_ORYRU (Uncharacterized protein n=6 Tax=Poaceae TaxID=4479 RepID=A0A0E0NFZ0_ORYRU)

HSP 1 Score: 57.0 bits (136), Expect = 1.370e-9
Identity = 27/30 (90.00%), Postives = 30/30 (100.00%), Query Frame = 0
Query:    1 MRATGGNKTKTPGPGAQSALRALARAGMKV 30
            +RATGGNKTKTPGPGAQSALRALAR+GMK+
Sbjct:   38 LRATGGNKTKTPGPGAQSALRALARSGMKI 67          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZK06_9STRA5.670e-1096.67Ribosomal protein S11 n=1 Tax=Tribonema minus TaxI... [more]
D7FYS4_ECTSI5.990e-1096.6740S ribosomal protein S14 n=3 Tax=Sar TaxID=269873... [more]
A0A6A2X9C2_HIBSY6.400e-1090.0040S ribosomal protein S14 n=1 Tax=Hibiscus syriacu... [more]
RS14_TOBAC7.370e-1090.0040S ribosomal protein S14 (Fragment) n=1 Tax=Nicot... [more]
A0A2U1MX59_ARTAN8.310e-1090.00Uncharacterized protein n=1 Tax=Artemisia annua Ta... [more]
A0A2U1PPJ3_ARTAN1.010e-990.00Ribosomal protein S11 n=1 Tax=Artemisia annua TaxI... [more]
A0A7J8PGG2_GOSRA1.160e-990.00Uncharacterized protein n=1 Tax=Gossypium raimondi... [more]
UPI001C4B88AD1.190e-993.3340S ribosomal protein S14-like n=1 Tax=Zingiber of... [more]
A0A8J5F7Y5_ZINOF1.290e-993.33Uncharacterized protein n=2 Tax=Zingiber officinal... [more]
A0A0E0NFZ0_ORYRU1.370e-990.00Uncharacterized protein n=6 Tax=Poaceae TaxID=4479... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036967Ribosomal protein S11 superfamilyGENE3D3.30.420.80coord: 1..34
e-value: 6.9E-13
score: 50.5
IPR001971Ribosomal protein S11PFAMPF00411Ribosomal_S11coord: 8..32
e-value: 1.5E-6
score: 28.6
IPR001971Ribosomal protein S11PANTHERPTHR1175940S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11coord: 1..31
NoneNo IPR availablePANTHERPTHR11759:SF31coord: 1..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58386contigEcto-sp13_S_contig58386:428..541 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58386.16314.1mRNA_Ecto-sp13_S_contig58386.16314.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig58386 428..571 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig58386.16314.1 ID=prot_Ecto-sp13_S_contig58386.16314.1|Name=mRNA_Ecto-sp13_S_contig58386.16314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
MRATGGNKTKTPGPGAQSALRALARAGMKVTAHTALA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036967Ribosomal_S11_sf
IPR001971Ribosomal_S11