mRNA_Ecto-sp13_S_contig58386.16314.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58386.16314.1
Unique NamemRNA_Ecto-sp13_S_contig58386.16314.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: A0A835ZK06_9STRA (Ribosomal protein S11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK06_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.910e-17
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 ELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKV 120
            ELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMK+
Sbjct:   84 ELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKI 123
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BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: D7FYS4_ECTSI (40S ribosomal protein S14 n=3 Tax=Sar TaxID=2698737 RepID=D7FYS4_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.050e-17
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 ELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKV 120
            ELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMK+
Sbjct:   87 ELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKI 126
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BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: A0A7J8PGG2_GOSRA (Uncharacterized protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A7J8PGG2_GOSRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.120e-17
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 ELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKV 120
            ELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMK+
Sbjct:   21 ELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKI 60
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BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: A0A392R8S1_9FABA (40S ribosomal protein S14 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392R8S1_9FABA)

HSP 1 Score: 75.5 bits (184), Expect = 3.690e-17
Identity = 36/40 (90.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 ELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKV 120
            ELGITALHIK+RATGGNKTKTPGPGAQ+ALRALAR+GMK+
Sbjct:    6 ELGITALHIKLRATGGNKTKTPGPGAQAALRALARSGMKI 45
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BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: A0A0E0NFZ0_ORYRU (Uncharacterized protein n=6 Tax=Poaceae TaxID=4479 RepID=A0A0E0NFZ0_ORYRU)

HSP 1 Score: 76.6 bits (187), Expect = 3.750e-17
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 ELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKV 120
            ELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMK+
Sbjct:   28 ELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKI 67
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BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: A0A1D6LPF3_MAIZE (40S ribosomal protein S14 n=4 Tax=Panicoideae TaxID=147369 RepID=A0A1D6LPF3_MAIZE)

HSP 1 Score: 76.6 bits (187), Expect = 3.750e-17
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 ELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKV 120
            ELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMK+
Sbjct:   28 ELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKI 67
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BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: UPI001C4B88AD (40S ribosomal protein S14-like n=1 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4B88AD)

HSP 1 Score: 77.8 bits (190), Expect = 3.770e-17
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 ELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKV 120
            ELGITALHIK+RATGGNKTKTPGPGAQSALRALARAGMK+
Sbjct:   28 ELGITALHIKLRATGGNKTKTPGPGAQSALRALARAGMKI 67
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BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: A0A5P1FHR1_ASPOF (Uncharacterized protein (Fragment) n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FHR1_ASPOF)

HSP 1 Score: 77.0 bits (188), Expect = 4.120e-17
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 ELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKV 120
            ELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMKV
Sbjct:   45 ELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKV 84
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BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: A0A8J5F7Y5_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F7Y5_ZINOF)

HSP 1 Score: 77.8 bits (190), Expect = 4.160e-17
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 ELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKV 120
            ELGITALHIK+RATGGNKTKTPGPGAQSALRALARAGMK+
Sbjct:   87 ELGITALHIKLRATGGNKTKTPGPGAQSALRALARAGMKI 126
[Close]
BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Match: A0A1D6P3S2_MAIZE (40S ribosomal protein S14 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6P3S2_MAIZE)

HSP 1 Score: 76.6 bits (187), Expect = 5.550e-17
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 ELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKV 120
            ELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMK+
Sbjct:   43 ELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKI 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58386.16314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZK06_9STRA1.910e-1797.50Ribosomal protein S11 n=1 Tax=Tribonema minus TaxI... [more]
D7FYS4_ECTSI2.050e-1797.5040S ribosomal protein S14 n=3 Tax=Sar TaxID=269873... [more]
A0A7J8PGG2_GOSRA3.120e-1792.50Uncharacterized protein n=1 Tax=Gossypium raimondi... [more]
A0A392R8S1_9FABA3.690e-1790.0040S ribosomal protein S14 (Fragment) n=1 Tax=Trifo... [more]
A0A0E0NFZ0_ORYRU3.750e-1792.50Uncharacterized protein n=6 Tax=Poaceae TaxID=4479... [more]
A0A1D6LPF3_MAIZE3.750e-1792.5040S ribosomal protein S14 n=4 Tax=Panicoideae TaxI... [more]
UPI001C4B88AD3.770e-1795.0040S ribosomal protein S14-like n=1 Tax=Zingiber of... [more]
A0A5P1FHR1_ASPOF4.120e-1795.00Uncharacterized protein (Fragment) n=1 Tax=Asparag... [more]
A0A8J5F7Y5_ZINOF4.160e-1795.00Uncharacterized protein n=2 Tax=Zingiber officinal... [more]
A0A1D6P3S2_MAIZE5.550e-1792.5040S ribosomal protein S14 n=1 Tax=Zea mays TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58386contigEcto-sp13_S_contig58386:428..571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size144
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size114
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463810.6888711-CDS-Ecto-sp13_S_contig58386:427..5411681463810.6888711-CDS-Ecto-sp13_S_contig58386:427..541Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58386 428..541 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463810.7004883-UTR-Ecto-sp13_S_contig58386:541..5711681463810.7004883-UTR-Ecto-sp13_S_contig58386:541..571Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig58386 542..571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58386.16314.1prot_Ecto-sp13_S_contig58386.16314.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58386 428..541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58386.16314.1

>prot_Ecto-sp13_S_contig58386.16314.1 ID=prot_Ecto-sp13_S_contig58386.16314.1|Name=mRNA_Ecto-sp13_S_contig58386.16314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
MRATGGNKTKTPGPGAQSALRALARAGMKVTAHTALA*
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mRNA from alignment at Ecto-sp13_S_contig58386:428..571-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58386.16314.1 ID=mRNA_Ecto-sp13_S_contig58386.16314.1|Name=mRNA_Ecto-sp13_S_contig58386.16314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58386:428..571- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCTGGGCATCACCGCCCTGCACATCAAGATGCGCGCCACCGGCGGCAA
CAAGACTAAGACCCCCGGCCCCGGCGCACAGTCGGCCCTCCGCGCTCTTG
CTCGCGCAGGAATGAAGGTGACGGCACACACAGCACTCGCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58386:428..571-

>mRNA_Ecto-sp13_S_contig58386.16314.1 ID=mRNA_Ecto-sp13_S_contig58386.16314.1|Name=mRNA_Ecto-sp13_S_contig58386.16314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58386:428..571- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCGCCACCGGCGGCAACAAGACTAAGACCCCCGGCCCCGGCGCACA
GTCGGCCCTCCGCGCTCTTGCTCGCGCAGGAATGAAGGTGACGGCACACA
CAGCACTCGCGTGA
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