mRNA_Ecto-sp13_S_contig58375.16312.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58375.16312.1
Unique NamemRNA_Ecto-sp13_S_contig58375.16312.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58375.16312.1 vs. uniprot
Match: A0A6H5KFF6_9PHAE (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFF6_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 3.430e-38
Identity = 85/99 (85.86%), Postives = 88/99 (88.89%), Query Frame = 1 
Query:   97 MVTLLHVTAIATALAVVVNAARPSALSVQLTNNKNHAGGGRGNKLGAAAGRRLSEGGGVGMVDVNDCENMEYTGVISLGTPPQEFRVIFSIAASYLWVS 393
            MV LL VTA+A ALAVVVNAA PSALSVQLT+NKNHAG GR N L AAAGRRL EGGGVG VDVNDCENMEYTGVISLGTPPQEFRVIFSIA SYLWV+
Sbjct:    1 MVALLRVTAVAAALAVVVNAAHPSALSVQLTSNKNHAGRGR-NMLSAAAGRRLGEGGGVGTVDVNDCENMEYTGVISLGTPPQEFRVIFSIATSYLWVA 98
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BLAST of mRNA_Ecto-sp13_S_contig58375.16312.1 vs. uniprot
Match: A0A6H5KFQ5_9PHAE (Peptidase A1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFQ5_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 5.280e-5
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:  271 VGMVDVNDCENMEYTGVISLGTPPQEFRVIFSIAASYLWVS 393
             G+V+V DCEN EY+GV+ +GTPPQEF V+    +  LWV+
Sbjct:   80 AGVVEVMDCENTEYSGVVGIGTPPQEFEVVLDTGSYNLWVT 120
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58375.16312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFF6_9PHAE3.430e-3885.86Peptidase A1 domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KFQ5_9PHAE5.280e-553.66Peptidase A1 domain-containing protein n=2 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58375contigEcto-sp13_S_contig58375:2..661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size660
Hectar predicted targeting categorysignal peptide
Exons1
Cds size408
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463810.5189025-UTR-Ecto-sp13_S_contig58375:1..971681463810.5189025-UTR-Ecto-sp13_S_contig58375:1..97Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig58375 2..97 +
1681463810.539218-UTR-Ecto-sp13_S_contig58375:505..6611681463810.539218-UTR-Ecto-sp13_S_contig58375:505..661Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig58375 506..661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463810.5292158-CDS-Ecto-sp13_S_contig58375:97..5051681463810.5292158-CDS-Ecto-sp13_S_contig58375:97..505Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58375 98..505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58375.16312.1prot_Ecto-sp13_S_contig58375.16312.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58375 98..505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58375.16312.1

>prot_Ecto-sp13_S_contig58375.16312.1 ID=prot_Ecto-sp13_S_contig58375.16312.1|Name=mRNA_Ecto-sp13_S_contig58375.16312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
MVTLLHVTAIATALAVVVNAARPSALSVQLTNNKNHAGGGRGNKLGAAAG
RRLSEGGGVGMVDVNDCENMEYTGVISLGTPPQEFRVIFSIAASYLWVSL
FLSVALALCSLRPSLLSKKSPKKLPTPARESSSNT*
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mRNA from alignment at Ecto-sp13_S_contig58375:2..661+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58375.16312.1 ID=mRNA_Ecto-sp13_S_contig58375.16312.1|Name=mRNA_Ecto-sp13_S_contig58375.16312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58375:2..661+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAACACCCTACACACCTTTTCGGCCGCCTTTTGCTTCCCGAGAACACCCT
AAACTGTGTCGAGCACACCCTAGCACGCACGCTCTTCACGAAGGAGATGG
TAACACTGCTGCACGTTACAGCTATAGCCACGGCTTTGGCTGTGGTTGTT
AACGCAGCCCGTCCATCTGCGCTCTCGGTTCAGCTCACCAACAACAAGAA
CCATGCAGGAGGAGGAAGAGGGAATAAGCTCGGCGCTGCCGCCGGCAGGA
GGCTAAGCGAAGGCGGCGGGGTGGGCATGGTCGACGTCAATGACTGCGAG
AACATGGAGTACACTGGCGTTATCTCCCTGGGAACTCCACCGCAGGAGTT
TAGGGTAATTTTTTCGATCGCGGCTAGCTACCTCTGGGTGAGTCTTTTTC
TCTCCGTTGCTCTCGCTCTCTGCTCTCTTCGTCCGTCTCTCCTCTCTAAG
AAGTCACCTAAAAAGTTGCCGACCCCGGCAAGGGAAAGCAGCAGCAACAC
ATGATTGAACAACACAAATATCTGTCGCCACACGATAACACGAGAACATC
GCGCGTGGGTGTGTAGGTAAAGCTCTGATTTGTAATATGTTTGCCTCGTT
TTCTCTATCTTTCGACCGCCACTTGTAAGCTCTTGCTGTGTTTGCGGCTT
GCTGTTGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58375:2..661+

>mRNA_Ecto-sp13_S_contig58375.16312.1 ID=mRNA_Ecto-sp13_S_contig58375.16312.1|Name=mRNA_Ecto-sp13_S_contig58375.16312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58375:2..661+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAACACTGCTGCACGTTACAGCTATAGCCACGGCTTTGGCTGTGGT
TGTTAACGCAGCCCGTCCATCTGCGCTCTCGGTTCAGCTCACCAACAACA
AGAACCATGCAGGAGGAGGAAGAGGGAATAAGCTCGGCGCTGCCGCCGGC
AGGAGGCTAAGCGAAGGCGGCGGGGTGGGCATGGTCGACGTCAATGACTG
CGAGAACATGGAGTACACTGGCGTTATCTCCCTGGGAACTCCACCGCAGG
AGTTTAGGGTAATTTTTTCGATCGCGGCTAGCTACCTCTGGGTGAGTCTT
TTTCTCTCCGTTGCTCTCGCTCTCTGCTCTCTTCGTCCGTCTCTCCTCTC
TAAGAAGTCACCTAAAAAGTTGCCGACCCCGGCAAGGGAAAGCAGCAGCA
ACACATGA
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