mRNA_Ecto-sp13_S_contig58316.16305.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58316.16305.1
Unique NamemRNA_Ecto-sp13_S_contig58316.16305.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58316.16305.1 vs. uniprot
Match: A0A6H5JMU8_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMU8_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 2.110e-76
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 1 
Query:    1 MSGMAGSKRFMSPEVCKGLPYNEKVDVYSFAIVLWEICTLRKPFAGMSVADHYREVITGGLRPPLDPRWPGALQNLLQACWHEDPDRRPSISEARDVLQQIFLAGGGWDI 330
            MSGMAGSKRFMSPEVCKGLPYNEKVDVYSFAIVLWEICTLRKPFAGMSVADHYREVITGGLRPPLDPRWPGALQ+LLQACWHEDPDRRPSISEARDVLQQIFLAGGGWDI
Sbjct:  234 MSGMAGSKRFMSPEVCKGLPYNEKVDVYSFAIVLWEICTLRKPFAGMSVADHYREVITGGLRPPLDPRWPGALQHLLQACWHEDPDRRPSISEARDVLQQIFLAGGGWDI 343
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BLAST of mRNA_Ecto-sp13_S_contig58316.16305.1 vs. uniprot
Match: A0A6H5L2N4_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2N4_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 6.600e-54
Identity = 80/107 (74.77%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    1 MSGMAGSKRFMSPEVCKGLPYNEKVDVYSFAIVLWEICTLRKPFAGMSVADHYREVITGGLRPPLDPRWPGALQNLLQACWHEDPDRRPSISEARDVLQQIFLAGGG 321
            MSGMAGSKRFM+PEVC GL YNEKVDVYSFA+VLW+IC LRKPFAGMS ADHY +V+ GGLRPPLD RWP  L +LLQACWH  PD RP++ +ARD L+QIF  GGG
Sbjct:  193 MSGMAGSKRFMAPEVCTGLSYNEKVDVYSFALVLWQICALRKPFAGMSEADHYLQVVQGGLRPPLDARWPPQLVHLLQACWHVHPDARPTMVQARDTLRQIFAMGGG 299
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BLAST of mRNA_Ecto-sp13_S_contig58316.16305.1 vs. uniprot
Match: A0A6H5K4Q0_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4Q0_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 3.050e-36
Identity = 56/102 (54.90%), Postives = 77/102 (75.49%), Query Frame = 1 
Query:    1 MSGMAGSKRFMSPEVCKGLPYNEKVDVYSFAIVLWEICTLRKPFAGMSVADHYREVITGGLRPPLDPRWPGALQNLLQACWHEDPDRRPSISEARDVLQQIF 306
            M+G  GS+RFM+PEV  G+PYNEK D+YS+ IVLWE+C L+KPFAGMS  +H R+V   G+RPPLD RWP  L++LL++CWH + + RP  ++A + L +I 
Sbjct:  263 MTGQTGSQRFMAPEVFDGMPYNEKADIYSYGIVLWELCALQKPFAGMSSHEHARKVFRHGVRPPLDKRWPDELKSLLRSCWHAEAEERPDAAQAVETLARII 364
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BLAST of mRNA_Ecto-sp13_S_contig58316.16305.1 vs. uniprot
Match: A0A835ZE86_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE86_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.070e-31
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:    1 MSGMAGSKRFMSPEVCKGLPYNEKVDVYSFAIVLWEICTLRKPFAGMSVADHYREVITGGLRPPLDPRWPGALQNLLQACWHEDPDRRPSISEARDVLQQIF 306
            M+G  GS R+M+PEV + LPYNEKVDVY+F ++LWE+   R+ F GMSV D Y+ V+ GG+RPPLD  WP AL+ L+  CWH D D+RP        L+ I+
Sbjct:  326 MTGETGSMRYMAPEVVESLPYNEKVDVYAFGLLLWEMLQYRRVFEGMSVGDFYQRVVNGGIRPPLDSSWPPALRKLIDLCWHADVDKRPDFHYIAAQLKDIY 427
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BLAST of mRNA_Ecto-sp13_S_contig58316.16305.1 vs. uniprot
Match: A0A6H5LAW2_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LAW2_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 3.330e-30
Identity = 53/108 (49.07%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:    1 MSGMAGSKRFMSPEVCKGLPYNEKVDVYSFAIVLWEICTLRKPFAGMSVADHYREVITGGLRPPLDPRWPGALQNLLQACWHEDPDRRPSISEARDVLQQIFLAGGGW 324
            M+G  GS R+M PEV   LPYNEK DVYSF ++LWE+ +LR+PF G++  +  + VI GG RPPL   W  AL+ L++ CW ED D RP   E  D L QI      W
Sbjct:  252 MTGETGSTRYMCPEVAMQLPYNEKADVYSFGLILWEMLSLRRPFEGLNRKEFVQSVIKGGRRPPLQQEWSAALRELMRRCWDEDMDTRPEFEEVEDTLLQITHREATW 359
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BLAST of mRNA_Ecto-sp13_S_contig58316.16305.1 vs. uniprot
Match: A0A6H5JUQ3_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUQ3_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.340e-29
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:    1 MSGMAGSKRFMSPEVCKGLPYNEKVDVYSFAIVLWEICTLRKPFAGMSVADHYREVITGGLRPPLDPRWPGALQNLLQACWHEDPDRRPSISEARDVLQQIFLAG 315
            M+G  GS R+M+PEV +  PYNEKVDVYSF I+LWE+ TL+KPF GM       +VI G  RPP+  +WP     L+Q+CW EDP +RPS ++  D+LQ +   G
Sbjct:  455 MTGETGSVRYMAPEVAESRPYNEKVDVYSFGIILWEMSTLKKPFDGMGHDRFLSQVIRGSHRPPVHKKWPKPWSELMQSCWAEDPSKRPSFAKVGDLLQGMLQDG 559
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BLAST of mRNA_Ecto-sp13_S_contig58316.16305.1 vs. uniprot
Match: A0A7S3XMV1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMV1_HETAK)

HSP 1 Score: 111 bits (278), Expect = 1.020e-28
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 MSGMAGSKRFMSPEVCKGLPYNEKVDVYSFAIVLWEICTLRKPFAGMS-VADHYREVITGGLRPPLDPRWPGALQNLLQACWHEDPDRRPSISEARDVLQQI 303
            ++G  GS R+M+PEV + LPYN  VDVY +A++ WE+  LR+PF  +  V D +++V+ GGLRPPLDP WP   + L  ACW  DP RRPS  E   +++ +
Sbjct:   77 LTGETGSLRYMAPEVAQQLPYNGAVDVYGWALLTWELMALRRPFHELKGVKDFFKQVVRGGLRPPLDPAWPEDFRELAAACWSPDPGRRPSAQELAALMKML 178
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BLAST of mRNA_Ecto-sp13_S_contig58316.16305.1 vs. uniprot
Match: D7FS28_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS28_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 3.860e-28
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 1 
Query:    1 MSGMAGSKRFMSPEVCKGLPYNEKVDVYSFAIVLWEICTLRKPFAGMSVADHYREVITGGLRPPLDPRWPGALQNLLQACWHEDPDRRPSISEARDVLQQIF 306
            M+G  GS R+M+PEV + LPYNEKVDVY+F ++LWE+   R+ F GM V D Y  V+  G RP LD  WP  L+ L+  CWH D DRRP+     + L+ ++
Sbjct:  179 MTGETGSMRYMAPEVVESLPYNEKVDVYAFGLLLWEMLEDRRVFDGMGVTDFYERVVNAGARPNLDSAWPQDLRKLISQCWHADVDRRPNFRTIAERLRTLY 280
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BLAST of mRNA_Ecto-sp13_S_contig58316.16305.1 vs. uniprot
Match: A0A835Z8G5_9STRA (Serine/threonine-protein kinase CTR1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G5_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.340e-28
Identity = 51/102 (50.00%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:    1 MSGMAGSKRFMSPEVCKGLPYNEKVDVYSFAIVLWEICTLRKPFAGMSVADHYREVITGGLRPPLDPRWPGALQNLLQACWHEDPDRRPSISEARDVLQQIF 306
            M+G  GS R+M+PEV +  PYNEKVDV+S+++VLWE+ TLRKP+ GM+    Y  V+ G +RPPL+ RWP    +LL ACW ED   RPS ++  + LQ++ 
Sbjct:  476 MTGETGSTRYMAPEVAESRPYNEKVDVHSYSMVLWEMATLRKPYDGMARDQFYSAVVRGHVRPPLNKRWPKEFSDLLSACWSEDWRARPSFADICNRLQEML 577
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BLAST of mRNA_Ecto-sp13_S_contig58316.16305.1 vs. uniprot
Match: A0A835Z8J1_9STRA (Serine/threonine-protein kinase CTR1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8J1_9STRA)

HSP 1 Score: 115 bits (289), Expect = 5.740e-28
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:    1 MSGMAGSKRFMSPEVCKGLPYNEKVDVYSFAIVLWEICTLRKPFAGMSVADHYREVITGGLRPPLDPRWPGALQNLLQACWHEDPDRRPSISEARDVLQQIF 306
            M+G  GS R+M+PEV +  PYNEKVDV+S+ +VLWE+ TLRKP+ GM+    Y  V+ G +RPPL+ RWP    +LL ACW ED   RPS ++  + LQ++ 
Sbjct:  414 MTGETGSTRYMAPEVAESRPYNEKVDVHSYGMVLWEMATLRKPYDGMARDQFYSAVVRGHVRPPLNKRWPKEFSDLLAACWAEDFKARPSFADVCNRLQEML 515
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58316.16305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMU8_9PHAE2.110e-7699.09Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6H5L2N4_9PHAE6.600e-5474.77Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6H5K4Q0_9PHAE3.050e-3654.90Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835ZE86_9STRA2.070e-3151.96Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A6H5LAW2_9PHAE3.330e-3049.07Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6H5JUQ3_9PHAE1.340e-2950.48Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A7S3XMV1_HETAK1.020e-2847.06Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FS28_ECTSI3.860e-2848.04Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835Z8G5_9STRA5.340e-2850.00Serine/threonine-protein kinase CTR1 n=1 Tax=Tribo... [more]
A0A835Z8J1_9STRA5.740e-2850.00Serine/threonine-protein kinase CTR1 n=1 Tax=Tribo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58316contigEcto-sp13_S_contig58316:229..561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score235.3
Seed ortholog evalue1.3e-59
Seed eggNOG ortholog2880.D7FPX1
Model size333
KEGG koko:K14304
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005795,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006914,GO:0006928,GO:0006935,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007528,GO:0008088,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009267,GO:0009605,GO:0009653,GO:0009894,GO:0009987,GO:0009991,GO:0010008,GO:0010506,GO:0010721,GO:0010769,GO:0010771,GO:0010941,GO:0010970,GO:0010975,GO:0010977,GO:0012505,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016197,GO:0016241,GO:0016301,GO:0016310,GO:0016482,GO:0016740,GO:0016772,GO:0016773,GO:0017016,GO:0017137,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019899,GO:0022008,GO:0022603,GO:0022604,GO:0023052,GO:0030030,GO:0030100,GO:0030154,GO:0030182,GO:0030424,GO:0030425,GO:0030705,GO:0031090,GO:0031175,GO:0031267,GO:0031323,GO:0031329,GO:0031344,GO:0031345,GO:0031410,GO:0031594,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0031984,GO:0032418,GO:0032501,GO:0032502,GO:0032879,GO:0032886,GO:0032989,GO:0032990,GO:0033036,GO:0033043,GO:0033267,GO:0033554,GO:0034613,GO:0034976,GO:0035556,GO:0036211,GO:0036465,GO:0036477,GO:0040007,GO:0040011,GO:0042147,GO:0042221,GO:0042330,GO:0042594,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043195,GO:0043198,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043679,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046907,GO:0048311,GO:0048312,GO:0048468,GO:0048488,GO:0048489,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048666,GO:0048667,GO:0048675,GO:0048699,GO:0048731,GO:0048812,GO:0048814,GO:0048846,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050808,GO:0050896,GO:0051020,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051493,GO:0051640,GO:0051641,GO:0051645,GO:0051646,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051683,GO:0051716,GO:0051960,GO:0051961,GO:0060284,GO:0060341,GO:0060548,GO:0060560,GO:0060627,GO:0061174,GO:0061564,GO:0061845,GO:0061919,GO:0065007,GO:0065008,GO:0070507,GO:0070727,GO:0071212,GO:0071496,GO:0071704,GO:0071840,GO:0090128,GO:0097447,GO:0097458,GO:0097479,GO:0097480,GO:0097485,GO:0097708,GO:0098588,GO:0098657,GO:0098693,GO:0098791,GO:0098793,GO:0098805,GO:0098852,GO:0099003,GO:0099111,GO:0099174,GO:0099504,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0140096,GO:0150034,GO:1900242,GO:1901214,GO:1901215,GO:1901564,GO:1902115,GO:1902284,GO:1903421,GO:1990033,GO:1990138,GO:2000026,GO:2000171,GO:2000331,GO:2000785
Exons1
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Cds size333
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463810.099659-CDS-Ecto-sp13_S_contig58316:228..5611681463810.099659-CDS-Ecto-sp13_S_contig58316:228..561Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58316 229..561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58316.16305.1prot_Ecto-sp13_S_contig58316.16305.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58316 229..561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58316.16305.1

>prot_Ecto-sp13_S_contig58316.16305.1 ID=prot_Ecto-sp13_S_contig58316.16305.1|Name=mRNA_Ecto-sp13_S_contig58316.16305.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
MSGMAGSKRFMSPEVCKGLPYNEKVDVYSFAIVLWEICTLRKPFAGMSVA
DHYREVITGGLRPPLDPRWPGALQNLLQACWHEDPDRRPSISEARDVLQQ
IFLAGGGWDI*
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mRNA from alignment at Ecto-sp13_S_contig58316:229..561+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58316.16305.1 ID=mRNA_Ecto-sp13_S_contig58316.16305.1|Name=mRNA_Ecto-sp13_S_contig58316.16305.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58316:229..561+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGGCATGGCCGGCAGCAAGCGTTTCATGAGCCCAGAGGTTTGCAA
GGGCCTCCCGTACAACGAGAAGGTCGACGTTTACTCGTTCGCCATCGTGC
TCTGGGAGATTTGCACCCTCCGAAAGCCGTTCGCCGGAATGAGCGTGGCC
GACCACTACCGAGAGGTCATCACCGGCGGCTTGAGGCCGCCGCTGGACCC
CCGATGGCCGGGAGCTCTCCAAAACCTCCTGCAGGCTTGCTGGCACGAGG
ACCCGGATCGACGGCCGTCGATTTCGGAGGCCAGGGATGTCTTGCAGCAA
ATTTTCCTGGCTGGGGGTGGGTGGGATATTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58316:229..561+

>mRNA_Ecto-sp13_S_contig58316.16305.1 ID=mRNA_Ecto-sp13_S_contig58316.16305.1|Name=mRNA_Ecto-sp13_S_contig58316.16305.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58316:229..561+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGGCATGGCCGGCAGCAAGCGTTTCATGAGCCCAGAGGTTTGCAA
GGGCCTCCCGTACAACGAGAAGGTCGACGTTTACTCGTTCGCCATCGTGC
TCTGGGAGATTTGCACCCTCCGAAAGCCGTTCGCCGGAATGAGCGTGGCC
GACCACTACCGAGAGGTCATCACCGGCGGCTTGAGGCCGCCGCTGGACCC
CCGATGGCCGGGAGCTCTCCAAAACCTCCTGCAGGCTTGCTGGCACGAGG
ACCCGGATCGACGGCCGTCGATTTCGGAGGCCAGGGATGTCTTGCAGCAA
ATTTTCCTGGCTGGGGGTGGGTGGGATATTTGA
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