mRNA_Ecto-sp13_S_contig5831.16304.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5831.16304.1
Unique NamemRNA_Ecto-sp13_S_contig5831.16304.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5831.16304.1 vs. uniprot
Match: D7G8P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P5_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.840e-41
Identity = 80/91 (87.91%), Postives = 83/91 (91.21%), Query Frame = 1 
Query:   91 MIEYAARLLRFADELEEGADVDSRVSLLRHGVEAVLTLAGAIDRDSSTAGHEGPSSADADELRHQGDKVIQFACALGFDAVDEDSDNEEQT 363
            MIEYAARLLRFADELEEGADVDSRVSLLR+GVEAVLTLAGAI+ DSS AGHEGPS ADADELRHQ DKVIQFACALGFDA DE  D+EE T
Sbjct:    1 MIEYAARLLRFADELEEGADVDSRVSLLRYGVEAVLTLAGAIEGDSSRAGHEGPSRADADELRHQEDKVIQFACALGFDAADEPCDSEEIT 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5831.16304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8P5_ECTSI1.840e-4187.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5831contigEcto-sp13_S_contig5831:5273..7054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size365
Hectar predicted targeting categoryother localisation
Exons3
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463810.0282774-CDS-Ecto-sp13_S_contig5831:5272..52961681463810.0282774-CDS-Ecto-sp13_S_contig5831:5272..5296Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5831 5273..5296 -
1681463810.0418968-CDS-Ecto-sp13_S_contig5831:5787..60841681463810.0418968-CDS-Ecto-sp13_S_contig5831:5787..6084Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5831 5788..6084 -
1681463810.0641851-CDS-Ecto-sp13_S_contig5831:7012..70541681463810.0641851-CDS-Ecto-sp13_S_contig5831:7012..7054Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5831 7013..7054 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5831.16304.1prot_Ecto-sp13_S_contig5831.16304.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5831 5273..7054 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5831.16304.1

>prot_Ecto-sp13_S_contig5831.16304.1 ID=prot_Ecto-sp13_S_contig5831.16304.1|Name=mRNA_Ecto-sp13_S_contig5831.16304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
LEHSHTTRTTRVRQVPEGSGWYHGLVSAETMIEYAARLLRFADELEEGAD
VDSRVSLLRHGVEAVLTLAGAIDRDSSTAGHEGPSSADADELRHQGDKVI
QFACALGFDAVDEDSDNEEQT
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mRNA from alignment at Ecto-sp13_S_contig5831:5273..7054-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5831.16304.1 ID=mRNA_Ecto-sp13_S_contig5831.16304.1|Name=mRNA_Ecto-sp13_S_contig5831.16304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1782bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5831:5273..7054- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGAACATAGCCACACCACACGCACGACACGAGTGCGGCAGGTGAGCAG
ACGATTGCCAGACCTTGACTTGATAACTCCTCGCACCCCGCGCATATGGG
GTTGTTTCACCACACGTTTCCGTTGCGGGCATCTACTCGCTGCGGCGGCA
GGTGTTGAATTTTCGATGTCAATTTTCAGATGTTCAAATTTGCATGTCGG
GCATGTGCTGGTGTCTTCAATGACGCTGCGCGTGACCGTCGTGATCTCTT
AGTGCCATATCACTTACTTGTAGATGGGTCAGTGATGTATGCATGACTTA
GGGCGTATGCTTCGATCACCCGTCTCCTCGAAAGCCGTGCTCGCATACAG
CAGTCTGTGCCACTGCTGCGTAAATCGGTTCTCTCTCTCTCTTCTCTCTC
TCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCCCTCGCACACACACACTGCCCCCCCGCC
CTCTCCCTCCATCTCCACCTCCCTCTCTCCCTCTCTCCGCACACACAACA
AATCAATGTGTCTGTCTCTGAAGATAGATCTGCATAATAGTCATTGCGCG
AAGGAACAAGCTCATCAGAAGCAAGGCAACTTTTATTAGGTTCAGATTTT
GAATTGATTGTATCGTACTCCGCACATCGTGCTGAAGTCTACGTAGTCTA
CTGCTGTAGCAGAGATATACATGCGCTGCGAACGCCAGCCATCGTCAAAC
ACATCCCGCCGATTAGCACCAGAGGACCGATTTGACGTATGTGCAAGGCT
GTGCGCTGTGCGCAAACCATGAGCGACAGCTTTTTCCCCACGCGTCCCCG
CGTCCGTTCGGGTGTGGACGCTCTGCTGTTTCACCCTTTTCCTGCTACTC
AGCATTTGTATAATACTTGTAGACAACATGAACACCGTCTAGTTTGAGTA
ACTCCCGCTGCTCTTGTCAGGTGCCCGAGGGTTCGGGTTGGTACCACGGT
CTCGTGTCTGCAGAAACCATGATCGAATATGCCGCTCGTTTGCTTCGGTT
CGCGGACGAGCTCGAGGAGGGCGCCGATGTGGATTCGCGCGTGTCGCTGC
TCCGACACGGGGTTGAGGCTGTCCTAACGCTCGCCGGTGCAATAGATCGA
GATTCCAGCACGGCAGGGCACGAGGGCCCGTCAAGCGCCGACGCTGACGA
GTTGCGCCACCAAGGAGACAAAGTGATTCAGTTCGCCTGTGCCTTGGGAT
TCGACGCGGTTGATGAGGTGGGTGTTTTGTTATCATGTTGGAATGCGGTA
TATGGAAAAAGGTCTGTTTGTACGAGCGTTTGGAGTGCGTTTCCTAACCT
CCCCATATATTTTCGTTTGTGACGACGTACATACAAGATGCATTCGTTCG
TTGCGTATGCCGGACCTTCGCGGCGCACCTCGAGCTTATCTCTGGGTACG
CGCCCGAAATGTAGTTGTCTGTGTTTCCGACCGACAGCATTGGCATGACG
TGGTGCGTCGTCTTCTCAGCCATGTCCACAGCCTCCTCATCTCCGCTCGT
AATGTCAAGTCCGAACTGCTCGATGCCCCACCTCATTTCCACGTGATTTC
GGCCGAAGTTGGTGTGGATGTTTGCTAATTCGTCTCTTTTCCCCGCCAAA
ACCACAGCGCCCGGGTTCGTGGCTCTAGTACACATTTCATTTTCCCTCGC
GACACGCTCCACCGCCTGCGATCGTTCTTCGACTCTGTCCGCTATGATAC
ACCTCCAGGATTCCGACAACGAGGAACAGACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5831:5273..7054-

>mRNA_Ecto-sp13_S_contig5831.16304.1 ID=mRNA_Ecto-sp13_S_contig5831.16304.1|Name=mRNA_Ecto-sp13_S_contig5831.16304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5831:5273..7054- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGAACATAGCCACACCACACGCACGACACGAGTGCGGCAGGTGCCCGA
GGGTTCGGGTTGGTACCACGGTCTCGTGTCTGCAGAAACCATGATCGAAT
ATGCCGCTCGTTTGCTTCGGTTCGCGGACGAGCTCGAGGAGGGCGCCGAT
GTGGATTCGCGCGTGTCGCTGCTCCGACACGGGGTTGAGGCTGTCCTAAC
GCTCGCCGGTGCAATAGATCGAGATTCCAGCACGGCAGGGCACGAGGGCC
CGTCAAGCGCCGACGCTGACGAGTTGCGCCACCAAGGAGACAAAGTGATT
CAGTTCGCCTGTGCCTTGGGATTCGACGCGGTTGATGAGGATTCCGACAA
CGAGGAACAGACC
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