mRNA_Ecto-sp13_S_contig5828.16301.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5828.16301.1
Unique NamemRNA_Ecto-sp13_S_contig5828.16301.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5828.16301.1 vs. uniprot
Match: A0A6H5KR73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR73_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 3.850e-24
Identity = 77/95 (81.05%), Postives = 79/95 (83.16%), Query Frame = 3 
Query:  177 MRTPVRVIGVILSTLVYLSCASVSRALAEEVAVVAPEERDPPQXXXXXXXXXXX---------KFQTEPGPAAGEEGNAVSEDEDLAVIEDDAAA 434
            MRTPVRVI VILSTLVYL CASV RALAEEVAVVAPEERDPPQXXXXXXXXXXX         + QTE GPAAGEEGNAVSEDEDLA +EDD AA
Sbjct:    1 MRTPVRVICVILSTLVYLFCASVGRALAEEVAVVAPEERDPPQXXXXXXXXXXXXXXXXXXLEQLQTESGPAAGEEGNAVSEDEDLAGVEDDTAA 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5828.16301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KR73_9PHAE3.850e-2481.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5828contigEcto-sp13_S_contig5828:7055..7572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size519
Hectar predicted targeting categorysignal peptide
Exons1
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463809.6634467-UTR-Ecto-sp13_S_contig5828:7054..72301681463809.6634467-UTR-Ecto-sp13_S_contig5828:7054..7230Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5828 7055..7230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463809.6746616-CDS-Ecto-sp13_S_contig5828:7230..75721681463809.6746616-CDS-Ecto-sp13_S_contig5828:7230..7572Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5828 7231..7572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5828.16301.1prot_Ecto-sp13_S_contig5828.16301.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5828 7231..7572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5828.16301.1

>prot_Ecto-sp13_S_contig5828.16301.1 ID=prot_Ecto-sp13_S_contig5828.16301.1|Name=mRNA_Ecto-sp13_S_contig5828.16301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
MRTPVRVIGVILSTLVYLSCASVSRALAEEVAVVAPEERDPPQPQEQHQQ
QQREKFQTEPGPAAGEEGNAVSEDEDLAVIEDDAAAPAAAAPVASAGDAT
CSSAAAAGSSCTDD
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mRNA from alignment at Ecto-sp13_S_contig5828:7055..7572+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5828.16301.1 ID=mRNA_Ecto-sp13_S_contig5828.16301.1|Name=mRNA_Ecto-sp13_S_contig5828.16301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=518bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5828:7055..7572+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGTCGAGAGGCACTCACACAGCGAGGAGTACTTCTGCGCGAGGTGCT
GTCAGGAGGGAAAAGGCGGGCATCCACAACCGCAAGGCAAGCCCTAGCAT
CTGATCTACAGTGCACGATCCTTGTTGGTTTGGGTCTCGTGCTACTGCTG
CTGTGTGTACTAGAAGGAGGAGGATCATGCGCACTCCTGTGCGCGTGATC
GGCGTGATCCTGTCGACGTTGGTCTACCTTTCCTGCGCTTCTGTGAGCAG
GGCGCTCGCGGAGGAGGTGGCGGTTGTTGCGCCCGAGGAACGAGACCCAC
CGCAACCTCAGGAGCAGCACCAGCAGCAGCAGCGGGAGAAATTTCAAACA
GAACCAGGACCTGCGGCTGGGGAGGAGGGAAACGCGGTGAGCGAGGACGA
GGACCTAGCTGTTATCGAAGACGACGCCGCCGCCCCCGCCGCTGCCGCTC
CCGTTGCCAGCGCTGGTGACGCCACCTGCTCATCAGCGGCCGCCGCCGGG
TCTTCTTGTACCGACGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5828:7055..7572+

>mRNA_Ecto-sp13_S_contig5828.16301.1 ID=mRNA_Ecto-sp13_S_contig5828.16301.1|Name=mRNA_Ecto-sp13_S_contig5828.16301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5828:7055..7572+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCACTCCTGTGCGCGTGATCGGCGTGATCCTGTCGACGTTGGTCTA
CCTTTCCTGCGCTTCTGTGAGCAGGGCGCTCGCGGAGGAGGTGGCGGTTG
TTGCGCCCGAGGAACGAGACCCACCGCAACCTCAGGAGCAGCACCAGCAG
CAGCAGCGGGAGAAATTTCAAACAGAACCAGGACCTGCGGCTGGGGAGGA
GGGAAACGCGGTGAGCGAGGACGAGGACCTAGCTGTTATCGAAGACGACG
CCGCCGCCCCCGCCGCTGCCGCTCCCGTTGCCAGCGCTGGTGACGCCACC
TGCTCATCAGCGGCCGCCGCCGGGTCTTCTTGTACCGACGAC
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