mRNA_Ecto-sp13_S_contig58260.16298.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58260.16298.1
Unique NamemRNA_Ecto-sp13_S_contig58260.16298.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58260.16298.1 vs. uniprot
Match: D7FKY3_ECTSI (Outer dynein arm docking complex protein oda-dc n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKY3_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 7.110e-44
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 1 
Query:    1 EDKRKTAGPDNAQTVKGGVSTTEREIQRVENRLQQTLMKASMLDAANARRKECVNSLRREKMAEAKAQKRLVAELERARAICASTTRATQQVL 279
            EDKRKTAGPDNAQTVKGGVSTTEREIQRVENRLQQTLMKASMLDAANARRKECVNSLRREKMAE KAQKRLVAELERARAICASTTRATQQ++
Sbjct:  125 EDKRKTAGPDNAQTVKGGVSTTEREIQRVENRLQQTLMKASMLDAANARRKECVNSLRREKMAEVKAQKRLVAELERARAICASTTRATQQMV 217
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BLAST of mRNA_Ecto-sp13_S_contig58260.16298.1 vs. uniprot
Match: A0A835Z6M1_9STRA (Plastocyanin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6M1_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 5.930e-5
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:   55 VSTTEREIQRVENRLQQTLMKASMLDAANARRKECVNSLRREKMAEAKAQKRLVAELERARAICASTTRATQ 270
            V  TER +Q++ENRLQQ L++AS L+  N   K  V+ +RR+K++E   ++R+ A+L   RA CA   R TQ
Sbjct:  121 VGQTERHVQKLENRLQQALIRASRLENENETLKVEVDRVRRQKLSEVGGRRRVEAQLAALRAQCAELVRRTQ 192
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58260.16298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKY3_ECTSI7.110e-4496.77Outer dynein arm docking complex protein oda-dc n=... [more]
A0A835Z6M1_9STRA5.930e-544.44Plastocyanin-like domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58260contigEcto-sp13_S_contig58260:154..634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score164.1
Seed ortholog evalue3.2e-38
Seed eggNOG ortholog2880.D7FKY3
Model size279
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2ENQM@1,2SS36@2759
Cds size279
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463809.4707482-CDS-Ecto-sp13_S_contig58260:153..2581681463809.4707482-CDS-Ecto-sp13_S_contig58260:153..258Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58260 154..258 +
1681463809.4815798-CDS-Ecto-sp13_S_contig58260:460..6341681463809.4815798-CDS-Ecto-sp13_S_contig58260:460..634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58260 461..634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58260.16298.1prot_Ecto-sp13_S_contig58260.16298.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58260 154..634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58260.16298.1

>prot_Ecto-sp13_S_contig58260.16298.1 ID=prot_Ecto-sp13_S_contig58260.16298.1|Name=mRNA_Ecto-sp13_S_contig58260.16298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
EDKRKTAGPDNAQTVKGGVSTTEREIQRVENRLQQTLMKASMLDAANARR
KECVNSLRREKMAEAKAQKRLVAELERARAICASTTRATQQVL
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mRNA from alignment at Ecto-sp13_S_contig58260:154..634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58260.16298.1 ID=mRNA_Ecto-sp13_S_contig58260.16298.1|Name=mRNA_Ecto-sp13_S_contig58260.16298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=481bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58260:154..634+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGATAAGCGGAAGACCGCCGGGCCCGACAATGCGCAGACGGTTAAGGG
CGGTGTCTCCACGACCGAGCGAGAGATTCAAAGGGTCGAGAACCGCCTCC
AGCAGGTTGGTTTCCGCGGTGCCATATTCCAAGCAGTCTAAGCCGCTCCG
TGCGCTTGAGTTCTTCTCCAGCTCGACAGGGGGCGGAGGAAGAGCTCTCG
CTTCCATTCGGTCAAACATTGAAGGGAAGCGCCCAGTTTCAGTTCTCCTT
CTCGGCCGCCAGTCCGTTGCATCTGTGCTCACCCACCATTTCCAATTTTT
GTCGCAGACACTGATGAAGGCTAGCATGTTGGACGCGGCCAACGCTCGCC
GTAAGGAGTGCGTCAACAGCCTGAGGAGAGAAAAAATGGCTGAGGCCAAG
GCTCAGAAGCGGCTGGTGGCTGAGCTGGAGCGAGCGAGGGCGATCTGCGC
GAGCACCACAAGGGCAACGCAGCAGGTACTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58260:154..634+

>mRNA_Ecto-sp13_S_contig58260.16298.1 ID=mRNA_Ecto-sp13_S_contig58260.16298.1|Name=mRNA_Ecto-sp13_S_contig58260.16298.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58260:154..634+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGATAAGCGGAAGACCGCCGGGCCCGACAATGCGCAGACGGTTAAGGG
CGGTGTCTCCACGACCGAGCGAGAGATTCAAAGGGTCGAGAACCGCCTCC
AGCAGACACTGATGAAGGCTAGCATGTTGGACGCGGCCAACGCTCGCCGT
AAGGAGTGCGTCAACAGCCTGAGGAGAGAAAAAATGGCTGAGGCCAAGGC
TCAGAAGCGGCTGGTGGCTGAGCTGGAGCGAGCGAGGGCGATCTGCGCGA
GCACCACAAGGGCAACGCAGCAGGTACTT
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