prot_Ecto-sp13_S_contig58256.16296.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig58256.16296.1
Unique Nameprot_Ecto-sp13_S_contig58256.16296.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length35
Homology
BLAST of mRNA_Ecto-sp13_S_contig58256.16296.1 vs. uniprot
Match: D1J792_ECTSI (ATP synthase subunit a, chloroplastic n=40 Tax=Phaeophyceae TaxID=2870 RepID=D1J792_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.770e-12
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0
Query:    1 MNILQSTNIINLNSLIFLSDIEVGKHLYWEVNEKT 35
            MNILQSTN INLNSLIFLSDIEVGKHLYWEVN+ T
Sbjct:    1 MNILQSTNTINLNSLIFLSDIEVGKHLYWEVNDIT 35          
BLAST of mRNA_Ecto-sp13_S_contig58256.16296.1 vs. uniprot
Match: A0A8F0F721_9PHAE (ATP synthase CF0 A subunit subunit IV n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F721_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 8.970e-7
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 0
Query:    1 MNILQSTNIINLNSLIFLSDIEVGKHLYWEVNEKT 35
            M+I Q+ N   LNSLIFL+DIEVGKHLYWE N+ T
Sbjct:    1 MDIFQNENFSGLNSLIFLADIEVGKHLYWEFNDIT 35          
BLAST of mRNA_Ecto-sp13_S_contig58256.16296.1 vs. uniprot
Match: A0A141BSD6_9PHAE (ATP synthase subunit a, chloroplastic n=14 Tax=Fucales TaxID=3009 RepID=A0A141BSD6_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 1.630e-5
Identity = 22/32 (68.75%), Postives = 28/32 (87.50%), Query Frame = 0
Query:    1 MNILQSTNIINLNSLIFLSDIEVGKHLYWEVN 32
            MN LQS+++IN +SL+FLSDIEVGKH Y E+N
Sbjct:    1 MNTLQSSSLINFDSLLFLSDIEVGKHFYLELN 32          
BLAST of mRNA_Ecto-sp13_S_contig58256.16296.1 vs. uniprot
Match: D1GJH7_FUCVE (ATP synthase subunit a, chloroplastic n=5 Tax=Fucales TaxID=3009 RepID=D1GJH7_FUCVE)

HSP 1 Score: 48.5 bits (114), Expect = 1.660e-5
Identity = 24/32 (75.00%), Postives = 25/32 (78.12%), Query Frame = 0
Query:    1 MNILQSTNIINLNSLIFLSDIEVGKHLYWEVN 32
            MN  QSTN IN  SLIFLSDIEVGK LY E+N
Sbjct:    1 MNTFQSTNFINFKSLIFLSDIEVGKRLYLELN 32          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58256.16296.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D1J792_ECTSI4.770e-1291.43ATP synthase subunit a, chloroplastic n=40 Tax=Pha... [more]
A0A8F0F721_9PHAE8.970e-768.57ATP synthase CF0 A subunit subunit IV n=1 Tax=Prot... [more]
A0A141BSD6_9PHAE1.630e-568.75ATP synthase subunit a, chloroplastic n=14 Tax=Fuc... [more]
D1GJH7_FUCVE1.660e-575.00ATP synthase subunit a, chloroplastic n=5 Tax=Fuca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58256contigEcto-sp13_S_contig58256:745..849 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58256.16296.1mRNA_Ecto-sp13_S_contig58256.16296.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig58256 745..849 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig58256.16296.1 ID=prot_Ecto-sp13_S_contig58256.16296.1|Name=mRNA_Ecto-sp13_S_contig58256.16296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
MNILQSTNIINLNSLIFLSDIEVGKHLYWEVNEKT
back to top