mRNA_Ecto-sp13_S_contig58256.16296.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58256.16296.1
Unique NamemRNA_Ecto-sp13_S_contig58256.16296.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58256.16296.1 vs. uniprot
Match: D1J792_ECTSI (ATP synthase subunit a, chloroplastic n=40 Tax=Phaeophyceae TaxID=2870 RepID=D1J792_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.770e-12
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 MNILQSTNIINLNSLIFLSDIEVGKHLYWEVNEKT 105
            MNILQSTN INLNSLIFLSDIEVGKHLYWEVN+ T
Sbjct:    1 MNILQSTNTINLNSLIFLSDIEVGKHLYWEVNDIT 35
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BLAST of mRNA_Ecto-sp13_S_contig58256.16296.1 vs. uniprot
Match: A0A8F0F721_9PHAE (ATP synthase CF0 A subunit subunit IV n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F721_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 8.970e-7
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 MNILQSTNIINLNSLIFLSDIEVGKHLYWEVNEKT 105
            M+I Q+ N   LNSLIFL+DIEVGKHLYWE N+ T
Sbjct:    1 MDIFQNENFSGLNSLIFLADIEVGKHLYWEFNDIT 35
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BLAST of mRNA_Ecto-sp13_S_contig58256.16296.1 vs. uniprot
Match: A0A141BSD6_9PHAE (ATP synthase subunit a, chloroplastic n=14 Tax=Fucales TaxID=3009 RepID=A0A141BSD6_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 1.630e-5
Identity = 22/32 (68.75%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:    1 MNILQSTNIINLNSLIFLSDIEVGKHLYWEVN 96
            MN LQS+++IN +SL+FLSDIEVGKH Y E+N
Sbjct:    1 MNTLQSSSLINFDSLLFLSDIEVGKHFYLELN 32
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BLAST of mRNA_Ecto-sp13_S_contig58256.16296.1 vs. uniprot
Match: D1GJH7_FUCVE (ATP synthase subunit a, chloroplastic n=5 Tax=Fucales TaxID=3009 RepID=D1GJH7_FUCVE)

HSP 1 Score: 48.5 bits (114), Expect = 1.660e-5
Identity = 24/32 (75.00%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:    1 MNILQSTNIINLNSLIFLSDIEVGKHLYWEVN 96
            MN  QSTN IN  SLIFLSDIEVGK LY E+N
Sbjct:    1 MNTFQSTNFINFKSLIFLSDIEVGKRLYLELN 32
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58256.16296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D1J792_ECTSI4.770e-1291.43ATP synthase subunit a, chloroplastic n=40 Tax=Pha... [more]
A0A8F0F721_9PHAE8.970e-768.57ATP synthase CF0 A subunit subunit IV n=1 Tax=Prot... [more]
A0A141BSD6_9PHAE1.630e-568.75ATP synthase subunit a, chloroplastic n=14 Tax=Fuc... [more]
D1GJH7_FUCVE1.660e-575.00ATP synthase subunit a, chloroplastic n=5 Tax=Fuca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58256contigEcto-sp13_S_contig58256:745..849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score66.6
Seed ortholog evalue2.6e-09
Seed eggNOG ortholog2880.D1J792
Preferred nameATP6
Model size105
KEGG koko:K02108,ko:K02126,ko:K02967
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,ko03010,ko04714,ko05010,ko05012,ko05016,map00190,map00195,map01100,map03010,map04714,map05010,map05012,map05016
KEGG ModuleM00157,M00158,M00178,M00179
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000276,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005886,GO:0005887,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006950,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008324,GO:0008340,GO:0008553,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009544,GO:0009579,GO:0009628,GO:0009987,GO:0010259,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019829,GO:0019866,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031090,GO:0031224,GO:0031226,GO:0031966,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033177,GO:0034220,GO:0034357,GO:0034641,GO:0034654,GO:0036296,GO:0036442,GO:0040011,GO:0042407,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042651,GO:0042776,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044455,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046716,GO:0046907,GO:0046933,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055035,GO:0055085,GO:0055086,GO:0055093,GO:0060249,GO:0061024,GO:0065007,GO:0065008,GO:0070050,GO:0070482,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098807,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600,GO:1990542
Exons1
EggNOG free text desc.ATP synthesis coupled proton transport
EggNOG OGsCOG0356@1,KOG4665@2759
Cds size105
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko00194,ko03011,ko03029,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463809.3783152-CDS-Ecto-sp13_S_contig58256:744..8491681463809.3783152-CDS-Ecto-sp13_S_contig58256:744..849Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58256 745..849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58256.16296.1prot_Ecto-sp13_S_contig58256.16296.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58256 745..849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58256.16296.1

>prot_Ecto-sp13_S_contig58256.16296.1 ID=prot_Ecto-sp13_S_contig58256.16296.1|Name=mRNA_Ecto-sp13_S_contig58256.16296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
MNILQSTNIINLNSLIFLSDIEVGKHLYWEVNEKT
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mRNA from alignment at Ecto-sp13_S_contig58256:745..849+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58256.16296.1 ID=mRNA_Ecto-sp13_S_contig58256.16296.1|Name=mRNA_Ecto-sp13_S_contig58256.16296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58256:745..849+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATATTCTCCAAAGTACTAATATTATTAATTTAAACTCATTAATCTT
TTTATCAGACATTGAAGTTGGAAAACATCTCTATTGGGAAGTGAACGAGA
AAACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58256:745..849+

>mRNA_Ecto-sp13_S_contig58256.16296.1 ID=mRNA_Ecto-sp13_S_contig58256.16296.1|Name=mRNA_Ecto-sp13_S_contig58256.16296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58256:745..849+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATATTCTCCAAAGTACTAATATTATTAATTTAAACTCATTAATCTT
TTTATCAGACATTGAAGTTGGAAAACATCTCTATTGGGAAGTGAACGAGA
AAACA
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