mRNA_Ecto-sp13_S_contig5823.16291.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5823.16291.1
Unique NamemRNA_Ecto-sp13_S_contig5823.16291.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5823.16291.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 263 bits (673), Expect = 4.430e-83
Identity = 133/145 (91.72%), Postives = 139/145 (95.86%), Query Frame = -2
Query:   36 MPGSNREEEDRSRLDGFEIEIFKLVRREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGANGQAGWRGCHGRTLLGAAAFGRSEKMVRTLLTAGATDDVNVLFGGERESALHVAAARGAEDSCRALMIAGADPNLRDRRKRSP 470
            MPGSNREEEDRSRL GFEIEIFKL+RREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGAN +AGWRGCHGRTLLGAAA GRSEKM+RTLLTAGATDDVNVLFGGE ESALHVAAARGA+D+CRALMIAGADPN+RDR  RSP
Sbjct:    1 MPGSNREEEDRSRLVGFEIEIFKLLRREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGANTEAGWRGCHGRTLLGAAALGRSEKMIRTLLTAGATDDVNVLFGGESESALHVAAARGADDTCRALMIAGADPNVRDRVGRSP 145          
BLAST of mRNA_Ecto-sp13_S_contig5823.16291.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 243 bits (620), Expect = 1.570e-75
Identity = 128/156 (82.05%), Postives = 131/156 (83.97%), Query Frame = -2
Query:    3 MPGSNREEEDRSRLDGFEIEIFKLVRREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGANGQAGWRGCHGRTLLGAAAFGRSEKMVRTLLTAGATDDVNVLFGGERESALHVAAARGAEDSCRALMIAGADPNLRDRRKRSPLHLAAVAGHHR 470
            MPGS REEEDRSRLDGFEIEIFKLV+R AT EQWKEWLRAP EHAAAEGNLD FTRLMDAGAN  AGWRGC+GRTLLGAAAFGRSEKMVRT LTAGATDDVNVLFGGERE                ALMI GADPN+RDRRKRSPLHLAAVAGHHR
Sbjct:    1 MPGSKREEEDRSRLDGFEIEIFKLVQRGATSEQWKEWLRAPREHAAAEGNLDFFTRLMDAGANAGAGWRGCNGRTLLGAAAFGRSEKMVRTTLTAGATDDVNVLFGGERE----------------ALMIDGADPNVRDRRKRSPLHLAAVAGHHR 140          
BLAST of mRNA_Ecto-sp13_S_contig5823.16291.1 vs. uniprot
Match: D8LQE2_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE2_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 7.580e-70
Identity = 114/146 (78.08%), Postives = 120/146 (82.19%), Query Frame = -2
Query:    6 RSRLDGFEIEIFKLVRREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGANGQAGWRGCHGRTLLGAAAFGR-SEKMVRTLLTAGATDDVNVLFGGERESALHVAAARGAEDSCRALMIAGADPNLRDRRKRSPLHLAAVAGHH 440
            RSRLDGFEIEIFKLV+ EA PEQWK+W RAPLEHA A GNLDLFTRLMDAGA+G+AGWRGCHGRTLLGAAA G  S+KMVR LL AGA  DVNV FG   ES LHV+AARGAE SC ALMIAGADPNLRD    S LHL A AGHH
Sbjct:   10 RSRLDGFEIEIFKLVKEEAAPEQWKQWFRAPLEHATARGNLDLFTRLMDAGADGEAGWRGCHGRTLLGAAACGNNSDKMVRALLEAGARRDVNVRFGNTNESTLHVSAARGAEASCTALMIAGADPNLRDWEGASSLHLTAKAGHH 155          
BLAST of mRNA_Ecto-sp13_S_contig5823.16291.1 vs. uniprot
Match: D8LQE9_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE9_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 5.090e-64
Identity = 109/150 (72.67%), Postives = 124/150 (82.67%), Query Frame = -2
Query:    3 DRSRLDGFEIEIFKLVRREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGANGQAGWRG--CHGRTLLGAAAFG-RSEKMVRTLLTAGATDDVNVLFGGERESALHVAAARGAEDSCRALMIAGADPNLRDRRKRSPLHLAAVAGHHR 443
            DRSR+DGFEIEIFKLV+ EAT  QWK+WLR PLEHAAA+GNLDLFTRLMDAGA G+ GWRG  CH RTLLGAAA G +S+KM+  LL AG TDDVN +FG ERESALHV+AARGAE++ +ALM AGADP+L +    SPLHLAA AGH R
Sbjct:    7 DRSRVDGFEIEIFKLVKEEATAGQWKQWLRTPLEHAAAKGNLDLFTRLMDAGAGGEPGWRGWGCHERTLLGAAACGTKSDKMIWALLEAGVTDDVNAVFGTERESALHVSAARGAEEASKALMAAGADPDLGNFEDESPLHLAAEAGHDR 156          
BLAST of mRNA_Ecto-sp13_S_contig5823.16291.1 vs. uniprot
Match: A0A6H5L7E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E1_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 2.450e-62
Identity = 125/187 (66.84%), Postives = 137/187 (73.26%), Query Frame = -2
Query:    9 SLPAIQRNPRT*HHQK*SSWCSPRPTMPGSNREEEDRSRLDGFEIEIFKLVRREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGANGQAGWRGCHGRTLLGAAAFGRSEKMVRTLLTAGATDDVNVLFGGERESALHVAAARGAEDSCRAL-------MIAGADPNLRDRRKRSPLHLAAVAGH 548
            SLPA QR PRT          +PR TM  S R+EE RS LD FEIEIFKLV++EAT EQWKEWLRAPLEHAAAEGNLD FTRLMDAGAN +AG RGCHGRTLLGA A  RSEKMVRTLLT GATDDV VLFG E ES LHV+AARGAEDSCR +           AD + +   +++PLHLAA  GH
Sbjct:  476 SLPARQRQPRTLTPPT-PIQLAPRNTMSASKRQEEGRSCLDCFEIEIFKLVQKEATSEQWKEWLRAPLEHAAAEGNLDFFTRLMDAGANVEAGRRGCHGRTLLGATACDRSEKMVRTLLTTGATDDVAVLFGVEHESPLHVSAARGAEDSCRVIGENVVRYTSLPADVHAKTTSQQTPLHLAASEGH 661          
BLAST of mRNA_Ecto-sp13_S_contig5823.16291.1 vs. uniprot
Match: A0A6H5KQY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY9_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 2.680e-60
Identity = 110/160 (68.75%), Postives = 122/160 (76.25%), Query Frame = -2
Query:    3 MPGSNREEEDRSRLDGFEIEIFKLVRREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGANGQAGWRGCHGRTLLGAAAFGRSEKMVRTLLTAGATDDVNVLFGGERESALHVAAARGAEDSCRALMIAGADPNLRDR----RKRSPLHLAAVAGHHR 470
            M GS RE  DRSR+DGFE++IFKLV+ E TPEQWK+WL APL HAAA+G LDLFTRL++AGA+G AGWRGCHGRTLLG AA     +MVR  L AGATDDVNV FG   +SAL VAAARGAE SC ALMIAGADPN  D     +  S LHLA  AGHHR
Sbjct:    1 MSGSKRE--DRSRVDGFEMKIFKLVQAEETPEQWKKWLGAPLNHAAAKGKLDLFTRLINAGADGSAGWRGCHGRTLLGEAARSDGNQMVRAFLEAGATDDVNVRFGAISQSALQVAAARGAEGSCSALMIAGADPNWIDYDDTVQLPSLLHLAGAAGHHR 158          
BLAST of mRNA_Ecto-sp13_S_contig5823.16291.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 5.970e-59
Identity = 99/135 (73.33%), Postives = 122/135 (90.37%), Query Frame = -2
Query:   57 SNREEEDRSRLDGFEIEIFKLVRREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGANGQAGWRGCHGRTLLGAAAFGRSEKMVRTLLTAGATDDVNVLFGGERESALHVAAARGAEDSCRALMIAGADPNLR 461
            ++++ +DR+R+DGFE+EIFKLV+REAT +QWKEWLRAPLEHAAA GNL LFTRLMDAGA+ +AGWRGC GRTLLGAAA  +++K++R LLTAGA  DVNVLFG +RESALH+AAARGAE++ +ALMIAGA+PNLR
Sbjct:    6 ASQQSQDRTRVDGFEVEIFKLVQREATSKQWKEWLRAPLEHAAASGNLGLFTRLMDAGASAEAGWRGCDGRTLLGAAACSKNKKILRALLTAGAKSDVNVLFGAKRESALHLAAARGAEEASKALMIAGANPNLR 140          
BLAST of mRNA_Ecto-sp13_S_contig5823.16291.1 vs. uniprot
Match: D7G692_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 5.340e-58
Identity = 103/144 (71.53%), Postives = 117/144 (81.25%), Query Frame = -2
Query:    3 LDGFEIEIFKLVRREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGANGQAGWRGCHGRTLLGAAAFGRSEKMVRTLLTA-GATDDVNVLFGGERESALHVAAARGAEDSCRALMIAGADPNLRDRRKRSPLHLAAVAGHHR 431
            LDG E+EIFKLVR +AT  QW+EWLRAPLEHAAAEGN+DLFTRLMDAGA+G AGWRGCHGRTLLGAAA+G++E++V  LL   GAT+DVNV FG   ESALHVAA R  +   R L+IAGADPNL D   RSPLH+AA  GHHR
Sbjct:   65 LDGLEVEIFKLVREQATSMQWREWLRAPLEHAAAEGNIDLFTRLMDAGADGSAGWRGCHGRTLLGAAAYGKNEEIVERLLAEDGATEDVNVCFGDRLESALHVAAGRDDQHLSRVLLIAGADPNLLDDVGRSPLHVAAEKGHHR 208          
BLAST of mRNA_Ecto-sp13_S_contig5823.16291.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 5.780e-58
Identity = 101/136 (74.26%), Postives = 118/136 (86.76%), Query Frame = -2
Query:   54 NREEEDRSRLDGFEIEIFKLVRREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGA-NGQAGWRGCHGRTLLGAAAFGRSEKMVRTLLTAGATDDVNVLFGGERESALHVAAARGAEDSCRALMIAGADPNLRD 458
            ++ E+ RSRLDGFEIEIFKLV+ E T EQWK+WL+ PLEHAAA GNLDLFTRLMDAG   G+ GWRGC+GRTLLGAAA+G+S+K+VR LL AGA DDVNVLFG E +SALHVAAARGAE++ +ALM+AGADPNL D
Sbjct:    6 SKREDGRSRLDGFEIEIFKLVQEEVTSEQWKQWLQVPLEHAAARGNLDLFTRLMDAGGFGGERGWRGCNGRTLLGAAAWGKSDKVVRALLEAGAGDDVNVLFGPEGKSALHVAAARGAEEASKALMVAGADPNLFD 141          
BLAST of mRNA_Ecto-sp13_S_contig5823.16291.1 vs. uniprot
Match: D7FZ92_ECTSI (Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ92_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 1.170e-57
Identity = 109/159 (68.55%), Postives = 125/159 (78.62%), Query Frame = -2
Query:    3 MPGSNREEEDRSRLDGFEIEIFKLVRREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGANGQAGWRGC--HGRTLLGAAAFG-RSEKMVRTLLTAGATDDVNVLFGGERESALHVAAARGAEDSCRALMIAGADPNLRDRRKRSPLHLAAVAGHHR 470
            M  S REE DRSR+DGFEIEIFKLV+ EAT +QWK+WLR PLEHAAA+GNLDLFTRL+DAGA G+ GW+G     RTLLGAAA G +S+ MV+ LL AG T+ VN  FG  RESALHV  ARGAED+ +ALM+AGADPNL +    SPLHLAA AGHHR
Sbjct:    1 MSASEREE-DRSRVDGFEIEIFKLVKEEATSKQWKQWLRTPLEHAAAKGNLDLFTRLIDAGAGGEPGWQGWGHRERTLLGAAACGNKSDVMVQALLEAGETEFVNTSFGATRESALHVTVARGAEDASKALMMAGADPNLGNVDGDSPLHLAAEAGHHR 158          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5823.16291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQN0_ECTSI4.430e-8391.72Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
A0A6H5L812_9PHAE1.570e-7582.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQE2_ECTSI7.580e-7078.08Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LQE9_ECTSI5.090e-6472.67Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
A0A6H5L7E1_9PHAE2.450e-6266.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQY9_9PHAE2.680e-6068.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD22_ECTSI5.970e-5973.33MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
D7G692_ECTSI5.340e-5871.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LB27_ECTSI5.780e-5874.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZ92_ECTSI1.170e-5768.55Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5823contigEcto-sp13_S_contig5823:3976..4548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size573
Hectar predicted targeting categorymitochondrion
Exons1
Cds size573
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463809.118774-CDS-Ecto-sp13_S_contig5823:3975..45481681463809.118774-CDS-Ecto-sp13_S_contig5823:3975..4548Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5823 3976..4548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5823.16291.1prot_Ecto-sp13_S_contig5823.16291.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5823 3976..4548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5823.16291.1

>prot_Ecto-sp13_S_contig5823.16291.1 ID=prot_Ecto-sp13_S_contig5823.16291.1|Name=mRNA_Ecto-sp13_S_contig5823.16291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=191bp
TRWCPATAARWSGLRFLRSRKFGSAPAIMSALHESSAPRAAATWRADSRS
PPKRTFTSSVAPAVSRVRTIFSLLPNAAAPSSVRPWQPRQPACPLAPASI
SRVKRSKFPSAAACSRGARSHSFHCSGVASLRTSLKISISKPSSRERSSS
SRFEPGMVGLGLHQLDYFWWCYVRGLRCIAGRLCCLGWQE*
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mRNA from alignment at Ecto-sp13_S_contig5823:3976..4548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5823.16291.1 ID=mRNA_Ecto-sp13_S_contig5823.16291.1|Name=mRNA_Ecto-sp13_S_contig5823.16291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5823:3976..4548+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACTCGATGGTGCCCAGCTACGGCAGCGAGGTGGAGCGGGCTGCGTTTCCT CCGATCGCGCAAGTTCGGGTCTGCTCCAGCGATCATGAGCGCCCTGCATG AGTCTTCAGCACCCCGAGCTGCTGCAACGTGGAGGGCGGACTCGCGTTCA CCTCCGAAGAGGACGTTTACATCATCCGTCGCCCCCGCGGTGAGCAGAGT GCGTACCATTTTCTCACTCCTACCAAATGCAGCCGCACCCAGCAGTGTTC GGCCATGGCAACCCCGCCAGCCTGCTTGCCCGTTGGCACCAGCATCCATC AGCCGTGTGAAGAGATCCAAATTTCCCTCGGCCGCGGCATGCTCCAGAGG TGCCCGAAGCCACTCCTTCCACTGCTCCGGAGTTGCCTCCCTCCGAACGA GTTTGAAAATCTCGATCTCGAAGCCGTCAAGCCGCGAGCGGTCCTCTTCT TCACGGTTCGAACCTGGCATGGTCGGTCTTGGACTGCACCAACTGGATTA CTTCTGGTGGTGTTATGTACGAGGGTTGCGCTGTATCGCTGGCAGGCTCT GCTGTCTTGGCTGGCAAGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5823:3976..4548+

>mRNA_Ecto-sp13_S_contig5823.16291.1 ID=mRNA_Ecto-sp13_S_contig5823.16291.1|Name=mRNA_Ecto-sp13_S_contig5823.16291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5823:3976..4548+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACTCGATGGTGCCCAGCTACGGCAGCGAGGTGGAGCGGGCTGCGTTTCCT
CCGATCGCGCAAGTTCGGGTCTGCTCCAGCGATCATGAGCGCCCTGCATG
AGTCTTCAGCACCCCGAGCTGCTGCAACGTGGAGGGCGGACTCGCGTTCA
CCTCCGAAGAGGACGTTTACATCATCCGTCGCCCCCGCGGTGAGCAGAGT
GCGTACCATTTTCTCACTCCTACCAAATGCAGCCGCACCCAGCAGTGTTC
GGCCATGGCAACCCCGCCAGCCTGCTTGCCCGTTGGCACCAGCATCCATC
AGCCGTGTGAAGAGATCCAAATTTCCCTCGGCCGCGGCATGCTCCAGAGG
TGCCCGAAGCCACTCCTTCCACTGCTCCGGAGTTGCCTCCCTCCGAACGA
GTTTGAAAATCTCGATCTCGAAGCCGTCAAGCCGCGAGCGGTCCTCTTCT
TCACGGTTCGAACCTGGCATGGTCGGTCTTGGACTGCACCAACTGGATTA
CTTCTGGTGGTGTTATGTACGAGGGTTGCGCTGTATCGCTGGCAGGCTCT
GCTGTCTTGGCTGGCAAGAGTGA
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