prot_Ecto-sp13_S_contig58215.16287.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig58215.16287.1
Unique Nameprot_Ecto-sp13_S_contig58215.16287.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length60
Homology
BLAST of mRNA_Ecto-sp13_S_contig58215.16287.1 vs. uniprot
Match: A0A6H5KWH7_9PHAE (XRN_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWH7_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 5.380e-37
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQVGAV 59
            MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQVG V
Sbjct:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQVGLV 59          
BLAST of mRNA_Ecto-sp13_S_contig58215.16287.1 vs. uniprot
Match: D7FME5_ECTSI (5'-3' exoribonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME5_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 3.660e-31
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQV 56
            MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQ+
Sbjct:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQL 56          
BLAST of mRNA_Ecto-sp13_S_contig58215.16287.1 vs. uniprot
Match: A0A835Z4G8_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G8_9STRA)

HSP 1 Score: 110 bits (275), Expect = 8.450e-27
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQV 56
            MGVPKFYRW+SERYPKINQIVSD++L+PEFDNLYLDMNGILH CTHPNDD LS Q+
Sbjct:    1 MGVPKFYRWLSERYPKINQIVSDTSLIPEFDNLYLDMNGILHGCTHPNDDSLSKQL 56          
BLAST of mRNA_Ecto-sp13_S_contig58215.16287.1 vs. uniprot
Match: A0A7S1XZW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZW9_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.180e-25
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQ 55
            MGVPKFYRW+SER+PKIN ++SD TLLPEFDN+YLDMNGILH CTHP+DD LS +
Sbjct:    1 MGVPKFYRWLSERFPKINTVISDLTLLPEFDNMYLDMNGILHGCTHPSDDELSKE 55          
BLAST of mRNA_Ecto-sp13_S_contig58215.16287.1 vs. uniprot
Match: A0A7S4DF97_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DF97_HETAK)

HSP 1 Score: 97.8 bits (242), Expect = 5.590e-25
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPND 49
            MGVPKFYRW+SERYP INQ++SD TLLPEFDNLYLDMNGILH C+HP D
Sbjct:    1 MGVPKFYRWLSERYPLINQLISDETLLPEFDNLYLDMNGILHNCSHPGD 49          
BLAST of mRNA_Ecto-sp13_S_contig58215.16287.1 vs. uniprot
Match: A0A7S2UCD1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCD1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.900e-24
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPN 48
            MGVPKFYRWISERYPKINQ+++D+ LLPEFD+LYLDMNGI+H CTHPN
Sbjct:    1 MGVPKFYRWISERYPKINQVITDTALLPEFDHLYLDMNGIIHGCTHPN 48          
BLAST of mRNA_Ecto-sp13_S_contig58215.16287.1 vs. uniprot
Match: A0A418FLG0_9STRA (5'-3' exoribonuclease n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FLG0_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.310e-22
Identity = 40/57 (70.18%), Postives = 51/57 (89.47%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQVG 57
            MG+P+FYRWISERYP+INQ +SD +LLPEFDNLYLD+NGI+H CTHP+DD +  ++G
Sbjct:    1 MGIPRFYRWISERYPQINQQISDVSLLPEFDNLYLDLNGIIHQCTHPSDDEVCEELG 57          
BLAST of mRNA_Ecto-sp13_S_contig58215.16287.1 vs. uniprot
Match: W4G3K4_9STRA (5'-3' exoribonuclease 1 n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G3K4_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.310e-22
Identity = 40/57 (70.18%), Postives = 51/57 (89.47%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQVG 57
            MG+P+FYRWISERYP+INQ +SD +LLPEFDNLYLD+NGI+H CTHP+DD +  ++G
Sbjct:    1 MGIPRFYRWISERYPQINQQISDVSLLPEFDNLYLDLNGIIHQCTHPSDDEVCEELG 57          
BLAST of mRNA_Ecto-sp13_S_contig58215.16287.1 vs. uniprot
Match: A0A485LQA0_9STRA (5'-3' exoribonuclease 1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQA0_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.790e-22
Identity = 40/57 (70.18%), Postives = 51/57 (89.47%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQVG 57
            MG+P+FYRWISERYP+INQ +SD +LLPEFDNLYLD+NGI+H CTHP+D  +S ++G
Sbjct:    1 MGIPRFYRWISERYPQINQQISDVSLLPEFDNLYLDLNGIIHQCTHPSDQEVSEELG 57          
BLAST of mRNA_Ecto-sp13_S_contig58215.16287.1 vs. uniprot
Match: A0A0M3IZI5_ANISI (5'-3' exoribonuclease 1 (inferred by orthology to a human protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3IZI5_ANISI)

HSP 1 Score: 93.2 bits (230), Expect = 2.520e-22
Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 0
Query:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQV 56
            MGVPKFYRWISERYP +++IV+D  + PEFDNLYLDMNGI+H+CTHPNDD +S ++
Sbjct:    1 MGVPKFYRWISERYPCLSEIVTDRQI-PEFDNLYLDMNGIIHSCTHPNDDDVSFRI 55          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58215.16287.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWH7_9PHAE5.380e-3798.31XRN_N domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FME5_ECTSI3.660e-3198.215'-3' exoribonuclease 1 n=1 Tax=Ectocarpus silicul... [more]
A0A835Z4G8_9STRA8.450e-2785.71XRN 5'-3' exonuclease N-terminus-domain-containing... [more]
A0A7S1XZW9_9STRA1.180e-2578.18Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4DF97_HETAK5.590e-2583.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2UCD1_9STRA1.900e-2483.33Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A418FLG0_9STRA1.310e-2270.185'-3' exoribonuclease n=4 Tax=Aphanomyces astaci T... [more]
W4G3K4_9STRA1.310e-2270.185'-3' exoribonuclease 1 n=6 Tax=Aphanomyces astaci... [more]
A0A485LQA0_9STRA1.790e-2270.185'-3' exoribonuclease 1 n=1 Tax=Aphanomyces stella... [more]
A0A0M3IZI5_ANISI2.520e-2271.435'-3' exoribonuclease 1 (inferred by orthology to ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.12390coord: 1..58
e-value: 3.7E-24
score: 87.6
IPR004859Putative 5-3 exonucleasePFAMPF03159XRN_Ncoord: 1..50
e-value: 1.2E-17
score: 64.2
IPR0270735'-3' exoribonucleasePANTHERPTHR123415'->3' EXORIBONUCLEASEcoord: 1..50
IPR0164945'-3' exoribonuclease 1PANTHERPTHR12341:SF75'-3' EXORIBONUCLEASE 1coord: 1..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58215contigEcto-sp13_S_contig58215:659..838 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58215.16287.1mRNA_Ecto-sp13_S_contig58215.16287.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig58215 659..838 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig58215.16287.1 ID=prot_Ecto-sp13_S_contig58215.16287.1|Name=mRNA_Ecto-sp13_S_contig58215.16287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDD
GLSAQVGAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004859Put_53exo
IPR0270735_3_exoribonuclease
IPR0164945_3_exoribonuclease_1