mRNA_Ecto-sp13_S_contig58206.16283.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58206.16283.1
Unique NamemRNA_Ecto-sp13_S_contig58206.16283.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig58206.16283.1 vs. uniprot
Match: D7FUU6_ECTSI (Small heat shock protein heat shock protein 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU6_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 1.210e-47
Identity = 80/89 (89.89%), Postives = 83/89 (93.26%), Query Frame = 1
Query:    1 IDDVFGSIEREMLAPWGLASRFPTARDMVPSFSSSLFRDGSRSLDMHLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERK 267
            I+DVFGSIEREMLAPWGLASRFPT RDM P+F +SLF DGSRSL M LDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERK
Sbjct:   20 INDVFGSIEREMLAPWGLASRFPTTRDMFPTFPTSLFGDGSRSLGMSLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERK 108          
BLAST of mRNA_Ecto-sp13_S_contig58206.16283.1 vs. uniprot
Match: A0A6H5JPQ3_9PHAE (HSP20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ3_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.560e-44
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 1
Query:   34 MLAPWGLASRFPTARDMVPSFSSSLFRDGSRSLDMHLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERK 267
            MLAPWG ASRFPTARDMVPS SSSLFRDGSRSLDM+LDFHETKDGFELIADLPGMK+EDVSIDVDQESGVLTVSGERK
Sbjct:    1 MLAPWGFASRFPTARDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERK 78          
BLAST of mRNA_Ecto-sp13_S_contig58206.16283.1 vs. uniprot
Match: A0A6H5JFM4_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM4_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 4.100e-44
Identity = 86/129 (66.67%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    1 IDDVFGSIEREMLAPWGLASRFPTA----------------------------------------RDMVPSFSSSLFRDGSRSLDMHLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERK 267
            IDDVFGSIEREMLAPWGLASRFPTA                                        RDMVPS SSSLFRDGSRSLDM+LDFHETKDGFELIADLPGMK+EDVSIDVDQESGVLTVSGERK
Sbjct:    5 IDDVFGSIEREMLAPWGLASRFPTASHMRYSTLRVHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXRDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERK 133          
BLAST of mRNA_Ecto-sp13_S_contig58206.16283.1 vs. uniprot
Match: A0A6H5KKF0_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF0_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 2.510e-43
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 1
Query:   34 MLAPWGLASRFPTARDMVPSFSSSLFRDGSRSLDMHLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERK 267
            MLAPWGLA RFPTARDMVPS SSSLFRDGSRSLDM+LDFHETKDGFELIADLPGMK+EDVSIDVDQESGVLTVSGERK
Sbjct:    1 MLAPWGLAFRFPTARDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERK 78          
BLAST of mRNA_Ecto-sp13_S_contig58206.16283.1 vs. uniprot
Match: B3VMZ8_FUCSE (Heat shock protein 20 n=2 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ8_FUCSE)

HSP 1 Score: 91.7 bits (226), Expect = 2.770e-21
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 1
Query:    7 DVFGSIEREMLAPWGLASRF-----PTARDMVPSFSSSLFRDGSRSLDMHLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERK 267
            DVF S+ER+++AP G++SRF     P +   + S   S+  +G   L M+LDFHET  G+EL ADLPGMKKED+ +D+D ESGVLTV+GERK
Sbjct:   18 DVFDSMERDLMAPSGMSSRFHTMDFPGSSVALVSAVPSMGVEGG--LGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERK 107          
BLAST of mRNA_Ecto-sp13_S_contig58206.16283.1 vs. uniprot
Match: A0A0D2UFN1_CAPO3 (Small HspC2 heat shock protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UFN1_CAPO3)

HSP 1 Score: 53.9 bits (128), Expect = 8.000e-7
Identity = 27/62 (43.55%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   82 MVPSFSSSLFRDGSRSLDMHLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERK 267
            + P++ SS +   S S    +D HE+ DG+ + ADLPGMKK+++S++   E+G+LT+SGE+K
Sbjct:   57 LTPAWPSSRWMT-SPSTSFAVDVHESSDGYHISADLPGMKKDEISVNC--ENGILTISGEKK 115          
BLAST of mRNA_Ecto-sp13_S_contig58206.16283.1 vs. uniprot
Match: UPI000B8C862A (17.6 kDa class I heat shock protein 2-like n=3 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C862A)

HSP 1 Score: 52.8 bits (125), Expect = 1.550e-6
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   88 PSFSSSLFRDGSRSLDMHLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGER 264
            PS SSSL R+ S  +D  +D+ ET +     ADLPGMKKE+V ++V +++ VL +SGER
Sbjct:   30 PSRSSSLSRESSAIVDTRVDWKETPEAHVFKADLPGMKKEEVKVEV-EDNRVLKISGER 87          
BLAST of mRNA_Ecto-sp13_S_contig58206.16283.1 vs. uniprot
Match: HSP22_ARATH (22.0 kDa heat shock protein n=29 Tax=Brassicaceae TaxID=3700 RepID=HSP22_ARATH)

HSP 1 Score: 53.1 bits (126), Expect = 1.940e-6
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   61 RFPTARDMVPSFSSSLFRDGSRSLD-MHLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERK 267
            RFP    ++      L RD S +L    +D+ ET +G E++ D+PG+KK++V I+V +E+GVL VSGERK
Sbjct:   45 RFPDPFKILERIPLGLERDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEV-EENGVLRVSGERK 113          
BLAST of mRNA_Ecto-sp13_S_contig58206.16283.1 vs. uniprot
Match: A0A5S9XQZ9_ARATH ((thale cress) hypothetical protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A5S9XQZ9_ARATH)

HSP 1 Score: 53.1 bits (126), Expect = 1.940e-6
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   61 RFPTARDMVPSFSSSLFRDGSRSLD-MHLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERK 267
            RFP    ++      L RD S +L    +D+ ET +G E++ D+PG+KK++V I+V +E+GVL VSGERK
Sbjct:   45 RFPDPFKILERIPLGLERDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEV-EENGVLRVSGERK 113          
BLAST of mRNA_Ecto-sp13_S_contig58206.16283.1 vs. uniprot
Match: UPI001E387ADE (Hsp20/alpha crystallin family protein n=1 Tax=Pontibacter sp. XAAS-A31 TaxID=2894083 RepID=UPI001E387ADE)

HSP 1 Score: 52.8 bits (125), Expect = 2.130e-6
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   58 SRFPTARDMVPS-FSSSLFRDGSRSLDM--------HLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERK 267
            +R+   +D++P+ FSS L R  + S++         H+D  ET++GFE+   LPG+KKED+SID  +  G LT+SGERK
Sbjct:    4 NRYNGMQDVMPNTFSSMLDRFFNESVNSRNFAGFTPHVDACETEEGFEIELALPGVKKEDISIDFQE--GKLTISGERK 80          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58206.16283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUU6_ECTSI1.210e-4789.89Small heat shock protein heat shock protein 20 n=1... [more]
A0A6H5JPQ3_9PHAE1.560e-4494.87HSP20 protein (Fragment) n=1 Tax=Ectocarpus sp. CC... [more]
A0A6H5JFM4_9PHAE4.100e-4466.67HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5KKF0_9PHAE2.510e-4394.87HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
B3VMZ8_FUCSE2.770e-2154.35Heat shock protein 20 n=2 Tax=Fucus serratus TaxID... [more]
A0A0D2UFN1_CAPO38.000e-743.55Small HspC2 heat shock protein n=1 Tax=Capsaspora ... [more]
UPI000B8C862A1.550e-649.1517.6 kDa class I heat shock protein 2-like n=3 Tax... [more]
HSP22_ARATH1.940e-644.2922.0 kDa heat shock protein n=29 Tax=Brassicaceae ... [more]
A0A5S9XQZ9_ARATH1.940e-644.29(thale cress) hypothetical protein n=1 Tax=Arabido... [more]
UPI001E387ADE2.130e-643.04Hsp20/alpha crystallin family protein n=1 Tax=Pont... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58206contigEcto-sp13_S_contig58206:4..270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score159.8
Seed ortholog evalue5.7e-37
Seed eggNOG ortholog2880.D7FUU6
Model size267
KEGG koko:K07200,ko:K13993
KEGG Pathwayko04068,ko04141,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map04068,map04141,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons1
EggNOG free text desc.response to heat
EggNOG OGsCOG0071@1,KOG0710@2759
Cds size267
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463808.7276926-CDS-Ecto-sp13_S_contig58206:3..2701681463808.7276926-CDS-Ecto-sp13_S_contig58206:3..270Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58206 4..270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58206.16283.1prot_Ecto-sp13_S_contig58206.16283.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58206 4..270 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58206.16283.1

>prot_Ecto-sp13_S_contig58206.16283.1 ID=prot_Ecto-sp13_S_contig58206.16283.1|Name=mRNA_Ecto-sp13_S_contig58206.16283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
IDDVFGSIEREMLAPWGLASRFPTARDMVPSFSSSLFRDGSRSLDMHLDF
HETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERK
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mRNA from alignment at Ecto-sp13_S_contig58206:4..270-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58206.16283.1 ID=mRNA_Ecto-sp13_S_contig58206.16283.1|Name=mRNA_Ecto-sp13_S_contig58206.16283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58206:4..270- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGACGATGTCTTCGGGTCGATCGAACGGGAGATGCTCGCCCCCTGGGG GCTCGCCTCCCGGTTCCCCACGGCGAGGGACATGGTTCCGAGCTTCTCCA GCAGCCTCTTTAGAGACGGCAGCAGGTCCCTCGACATGCACCTGGACTTC CACGAGACAAAGGACGGGTTTGAGCTGATTGCCGACCTTCCCGGGATGAA GAAAGAGGACGTCTCCATTGATGTTGACCAGGAATCCGGCGTGCTGACGG TGTCGGGCGAGCGTAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58206:4..270-

>mRNA_Ecto-sp13_S_contig58206.16283.1 ID=mRNA_Ecto-sp13_S_contig58206.16283.1|Name=mRNA_Ecto-sp13_S_contig58206.16283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58206:4..270- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGACGATGTCTTCGGGTCGATCGAACGGGAGATGCTCGCCCCCTGGGG
GCTCGCCTCCCGGTTCCCCACGGCGAGGGACATGGTTCCGAGCTTCTCCA
GCAGCCTCTTTAGAGACGGCAGCAGGTCCCTCGACATGCACCTGGACTTC
CACGAGACAAAGGACGGGTTTGAGCTGATTGCCGACCTTCCCGGGATGAA
GAAAGAGGACGTCTCCATTGATGTTGACCAGGAATCCGGCGTGCTGACGG
TGTCGGGCGAGCGTAAG
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